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Collection of rasters and social ecological indicators for Zone Atelier Pyrénées Garonne
No full textOpen, world wide rasters (biogeoregions, land surface temperature, normalised difference vegetation index, population density and land cover) are cropped with respect to the polygon of the Zone Atelier Environmental Urban so as to compute indicators. This dataset contains the shapefile, rasters for variables BIOG (biogeoregion), LSTD (land surface temperature day), LSTN (land surface temperature night), NDVI (normalized difference vegetation index), GPW4 (population density), and LC (land cover) cropped with respect to the shapefile, and social ecological indicators for these variables computed as averages or quantiles
Occurences of the Boeckella genus (Copepoda, Calanoida) in New Caledonia
No full textThis dataset contains the occurences of the copepod genus Boeckella in New Caledonia gathered during expeditions from 2016 to 2023 of the program "La Planète Revisitée", of the environmental consulting firm “Ethyc’o” and the association “Vies d’Ô douce”. It is the third time this genus is recorded in New Caledonia and several new species have been found. This dataset is used in the article by Royaux et al., 2024 and Royaux et al., 2025. It is a subset of Coline Royaux's PhD thesis dataset which will be updated throught the research and validation process. Partial COI (Cytochrome Oxidase I) gene of 110 individuals of Boeckella spinogibba, 33 individuals of Boeckella sibleti, and 24 of undescribed Boeckella species has been sequenced with Sanger method. Original AB1 data files for these sequenced are shared along with tabular data files on individuals (containing e.g. sample ID, species and sex identified, NCBI GenBank accession for cleaned sequences and used primers for amplifications), occurences (containing e.g. sample ID, species identified, French Natural History Museum (MNHN) collection ID), samples (containing e.g. sample type, location ID, sampling date, sampler name), locations (containing e.g. other names of the location, coordinates in decimal degrees WGS84) and DNA extractions (containing e.g. extraction date, laboratory operator) and fasta files with all found haplotypes sequences and primer used. DNA extraction (https://dx.doi.org/10.17504/protocols.io.j8nlk4x7wg5r/v1; https://dx.doi.org/10.17504/protocols.io.36wgqnm9ygk5/v1) and PCR (dx.doi.org/10.17504/protocols.io.261ge4y4jv47/v2; https://dx.doi.org/10.17504/protocols.io.n92ld8q57v5b/v1) protocols are available on protocols.io. Sequence cleaning workflow is available on Galaxy at https://usegalaxy.fr/u/coline_royaux/w/sanger1--from-ab1-to-aligned-fasta-imported-from-uploaded-file ; https://usegalaxy.fr/u/coline_royaux/w/sanger1--from-ab1-to-consensus-and-blast-no-final-alignment and history retracing data cleaning steps at https://usegalaxy.fr/u/coline_royaux/h/automatic-boeckella-nc-data-cleaning-1 ; https://usegalaxy.fr/u/coline_royaux/h/boeck-sanger-2024-clean
Camera-trapping: wild and domestic species occurrences in three Pyrenean pastures - POP Project additional files
No full textThe coexistence of the brown bear and farmers in the Pyrenees has been a major concern for several decades. Bears depredation on livestock has multiple implications for traditional practices of extensive grazing, and call for a better understanding of the various ways in which humans and non-humans interact across different territories. The present dataset stems from the "POP: Pastoralism and Bears in the Pyrenees" research project led by the GEODE laboratory (UMR 5602 CNRS-UT2J) and the Association Dissonances, as part of a thesis supervised by Ruppert Vimal and Sylvie Guillerme, and carried out by Alice Ouvrier. This project proposes to study the bears/farmers relationships and interactions in three Pyrenean mountain pastures. As part of an interdisciplinary approach combining animal geography and ecology, the spatio-temporal activity of the different species was explored using a network of 118 camera traps. The cameras were installed on the summer pastures while livestock was present in the mountains, between May and October, from 2021 to 2023, and were set in a 400m x 400m grid covering a total area of around 2,000 Ha. The data generated by this sampling protocol covers a total of 19 species, 1 class and 2 families. The dataset can be found at the following DOI : https://doi.org/10.15468/939z6d. In addition, the datapaper associated with the dataset can be consulted at the following DOI : https://doi.org/10.3897/BDJ.12.e126097.
You can find here two additional files to the dataset published on GBIF, providing information on the operating days of each camera trap (here indicated by the geometry of the grid cell in which they are installed). In "POP_project_CT_operation.ods", you'll find an overview of each camera trap operation. In "POP_project_CT_operation_2.ods", you'll find a list of each day's operation for each trap. The three sheets of each file correspond to the three years. In these documents, each camera trap is indicated by the location of the centroid of the grid cell in which it is installed. This makes it easy to link them to the dataset published in GBIF. In addition, the geometry of each grid cell is also indicated, to make it easier to reuse the data
Shapefile de la Zone atelier environnementale urbaine de Strasbourg
No full textShapefiles de la ZAEU et de ses sites (Ostwaldergraben et Rohschollen
Collection of rasters and social ecological indicators for Zone Atelier Plaine et Val de Sèvre
No full textOpen, world wide rasters (biogeoregions, land surface temperature, normalised difference vegetation index, population density and land cover) are cropped with respect to the polygon of the Zone Atelier Environmental Urban so as to compute indicators. This dataset contains the shapefile, rasters for variables BIOG (biogeoregion), LSTD (land surface temperature day), LSTN (land surface temperature night), NDVI (normalized difference vegetation index), GPW4 (population density), and LC (land cover) cropped with respect to the shapefile, and social ecological indicators for these variables computed as averages or quantiles
Collection of rasters and social ecological indicators for Zone Atelier Alpes
No full textOpen, world wide rasters (biogeoregions, land surface temperature, normalised difference vegetation index, population density and land cover) are cropped with respect to the polygon of the Zone Atelier Environmental Urban so as to compute indicators. This dataset contains the shapefile, rasters for variables BIOG (biogeoregion), LSTD (land surface temperature day), LSTN (land surface temperature night), NDVI (normalized difference vegetation index), GPW4 (population density), and LC (land cover) cropped with respect to the shapefile, and social ecological indicators for these variables computed as averages or quantiles
A dendroarchaeological tree-ring dataset of Abies alba from historic buildings in the French Pyrenees (BENDYS project ANR-19-CE03-0010)
No full textWe carried out an archaeological census in the northern slopes of the Pyrenees which led to the acquisition of 393 tree-ring series from fir (Abies alba Mill.), deciduous oak (deciduous Quercus), beech (Fagus sylvatica L.), pine (Pinus sp.) and poplar (Populus). We successfully cross-dated 57 series from fir trees and 67 short series (less than 50 rings). The other 269 series remain undated. The tree-ring series were extracted from building timbers used in barns located in the immediate vicinity of current old-growth beech-fir forests. The wooden pieces also comes from houses and churches close to the forests, where the timbers are also preserved in the frameworks, ceilings and joineries. The samples were taken by coring and sectioning. Two chronologies for fir (Abies alba Mill.) were dated for two periods: 1446-1655 and 1679-1952 AD. The ring series measurements were performed with a LINTAB measurement table combined with TSAP-Win program for recording measured values. The series were cross-dated with the DendronIV program. Our study provides the first dated tree ring series for fir in the French Pyrenees.
This research was funded by the ANR-BENDYS project ANR-19-CE03-0010 led by Vanessa Py-Saragaglia and the GEODE CNRS UMR 5602 laboratory. We would like to thank Sylvie Ladet (INRAE Dynafor UMR 1201, Auzeville-Tolosane, France) and Emilie Lerigoleur for their contribution
Dataset of physicochemical, microbiological, and plant root parameters of 135 soils from various urban land uses Blois city, France. Project "En Forme Biensur".
No full textThis data collection describes the main soil physicochemical characteristics (texture, pH, water status, chemical content), plant traits (root functional traits), microbial diversity (sequencing of Bacteria, Archaea, and Fungi) as well as abundances (DNA, bacterial, and fungal quantifications), and the functioning of urban soils (respiration, nitrogen cycle, extracellular enzymatic activities, potential methanogenesis) in Blois, a medium-sized city of France
Collection of rasters and social ecological indicators for Zone Atelier bassin de la Moselle
No full textOpen, world wide rasters (biogeoregions, land surface temperature, normalised difference vegetation index, population density and land cover) are cropped with respect to the polygon of the Zone Atelier bassin de la Moselle so as to compute indicators. This dataset contains the shapefile, rasters for variables BIOG (biogeoregion), LSTD (land surface temperature day), LSTN (land surface temperature night), NDVI (normalized difference vegetation index), GPW4 (population density), and LC (land cover) wropeed with respect to the shapefile, and social ecological indicators for these variables computed as averages or quantiles
Data from: Responses of leaf biomechanics and underlying traits to rangeland management differ between graminoids and forbs
No full textData used in Segrestin, J., Kazakou, E., Coq, S., Sartori, K., Richarte, J., Rowe, N.P. & Garnier, E. (2023) Responses of leaf biomechanics and underlying traits to rangeland management. Journal of Vegetation Scienc