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Macro-invertebrates, water quality and water and sediment contaminnants in ponds on the Saclay Plateau (France)
No full textThe data relate to the monitoring of 12 ponds located on the Saclay plateau (78, 91, France) during 2 sessions (June and September) in 2016 and 2017 with macroinvertebrate sampling, measurements of water quality, and contaminant concentrations in water and sediment. The ponds studied are in a peri-urban environment with, in varying proportions, natural wooded areas, agricultural areas and urbanized areas.
Water quality data include pH, dissolved oxygen, conductivity, turbidity, suspended solids, chemical oxygen demand, dissolved organic carbon, total phosphorus, total nitrogen, orthophosphate, ammonium, total herbicide and insecticide concentrations.
Sediment data: total concentration of herbicides, fungicides, insecticides, pharmaceuticals and PAHs
Replication data for: Fig 8.2, 8.3, and 8.4, Alarm calling to stuffed vs real badger, WTPDs, 20 Nov 2025
No full textFILE DESCRIPTION
Keywords: Barbara, real badger, stuffed badger, WTPDs
File name: Fig 8.2, 8.3, and 8.4, Alarm calling to stuffed vs real badger, WTPDs, 20 Nov 2025
Here I investigate alarm calling of WTPDs to my stuffed badgers vs
alarm calling by the SAME WTPDS to a real badger (Barbara) in
spring 2012. I used responses to the real badger from 30 May 2012
through 28 June 2012. This is the SAME TIME INTERVAL when we pulled our stuffed badgers.
This file has been checked TWO TIMES by JLH alone on 15 March 2019.
All data are from 2012 for WTPDs at ANWR = Arapaho National Wildlife Refuge..
WTPD = Nyanzol marker for each WTPD
Eartag = unique right eartag for each WTPD
Clan = designation of clan where each WTPD lived
Stuffed badger = percentage of times that each WTPD gave alarm call
in response to moving badger stuffed in lifelike pose
Real badger = percentage of times that each WTPD gave alarm call
in response to single real badger = Barbara
Real badger was a single female adult badger with four unweaned
babies. We named this badger Barbara, and her home den was
was about 15 meters in front of John Hoogland's tower
One only = 0 means that we observed >= 2 responses to both
the real AND the stuffed badgers for each WTPD
One only = 1 means that we observed only a single response to the
real badger (RSRAB) or to our stuff badgers (several WTPDs)
For my analyses, I use data for ALL 31 WTPDS, including those
for which Variable = Only = 1
Note that for female-RSRAB, we have one response to real badger, and 0 responses
to stuffed badger. RSRAB was killed by real badger before our experiments
with the stuffed badgers.
Old File name = WTPDs, REAL vs stuffed badger, 28 March 2019
For statistical analyses, I will DELETE data from RSRAB, because I had no information
from RSRAB for responses to our stuffed badgers,
These data used for Figs 8.2, 8.3, and 8.4 in Hoogland 2026.
This file ready for longterm storage on 02 June 2025.
File name: Fig 8.2, 8.3, and 8.4. Alarm calling to stuffed vs real badger, WTPDs, 20 Nov 2025
For some analyses, I considered data from the same WTPD adult on different days or at
different times of the same day to be independent
Replication data for: Fig 8.1, 8.5, 8.6, 8.7, 8.8, Alarm calls, Males and females, WTPDs, 19 Nov 2025
No full textFILE DESCRIPTION
Keywords: alarm calls, WTPDs, age, ARS, clan size, sex
Filename = Fig 8.1, 8.5, 8.6, 8.7, 8.8, Alarm calls, Males and females, WTPDs, 19 Nov 2025
OLD Filename = WTPDs, New alarm calls for stats, 01 April 2019
This file contains WTPD alarm calls in response to stuffed badger for 2006 through 2018
WTPD = Nyanzol marker on pelage
Eartag = right or left eartag
Sex = Male or Female (Fem)
Class of caller: 0 = No known kin of any kind in home territory
1 = distant kin only in home territory (cousins, nieces, nephews, aunts, uncles, with r <=0.25)
Class 1 also includes NON-LITTERMATE siblings from different years
2 = littermate sibling in home territory, but NO OFFSPRING
3 = mother in home territory
4 = offspring in home territory. In most cases, the offspring are juveniles of the
current year. In a few cases, the offspring are adults form earlier years.
Callfreq = proportion of experiments with stuffed badger when WTPD gave alarm call
Trials = number of experiments with stuffed badger
Age = age in years of WTPD
Clan size = number of adults and yearlings in home territory
Yearling offspring only = 0 means that female had weaned juveniles in home territory for experiments
Yearling offspring only = 1 means that female had adult offspring only (NO BABIES) in home terr for experiments
For half-male clans, I usually INCLUDED the single male in BOTH clans
This file checked two times on 08 Dec 2018, once by John and once by John and Judy
NOTE: Some data from 2010 are at end of file (out of order)
Note: I created this file 0n 08 Nov 2018. On 10 December, I change many of the ratings
for class of WTPD males. If a male copped with a female, I scored him as class = 3,
EVEN IF HE DID NOT SIRE ANY OF THAT FEMALE'S BABIES.
On 05 Mar 2019, his file has now been checked TWO TIMES (JLH alone, and JLH + Judy).
On 05 March 2019, this file is now ready for statistics.
On 28 March, I change Yearling offspring only for H6 (613 in 2009) from 0 to 1.
On 01 April 2019, I change Callfreq for 4SRS (947) in 2010 from 100 to 87.5.
For many analyses, I considered data from the same WTPD in different years to be independent.
Filename = Fig 8.1, 8.5, 8.6, 8.7, 8.8, Alarm calls, WTPDs, 19 Nov 202
Prey abundance and biomass matrices of Common dolphins in the Bay of Biscay from stomach contents collected between 1999 and 2019
No full textIn the context of common dolphin (Delphinus delphis) bycatch in the Bay of Biscay, diet of stranded dolphins was studied to investigate time series variation of prey’s diversity, abundance and mass and the implication of the feeding ecology of dolphins in the interaction with fishing vessels.
The dataset contains prey abundance and reconstructed biomass matrices of 238 common dolphin’s stomach contents collected between December and March from 1999 to 2019. Analyses were run on the total diet of predators but also on fresh diet only (including fresh preys according to digestion state, corresponding to the last food intake). To investigate temporal variation, we compared two periods (former: 1999 – 2006 and recent: 2017 – 2019).
The dataset also includes information on dolphins sampled (size, sex, sampling period, stranding coordinates)
data physico-chimie lac Pavin Tahri et al. 2024 Botany Letters
No full textdonnées physico-chimique du lac Pavin: Temperature (°C), Conductivité (µS/cm), pH, O2 (%) et (mg/l), NO3- (mg/l), PO43- (mg/l) et SO42-(mg/l) de juillet 2022 à octobre 202
The core story: intertwined maternal and progeny signatures enclosed in the otolith.
No full textsynchrotron-XRF spectrometry acquisition hyperspectral dataset (.h5) and R script
Analytical imaging via synchrotron analysis was used to study sagittal otoliths of four freshwater pipefish species exhibiting amphidromous or freshwater resident lifestyles. We undertook a hyperfine elemental scanning of a 25 μm diameter length area centred on the core, namely the pre-hatch zone, corresponding to the sagitta formed during embryogenesis. We analysed calcium (Ca), strontium (Sr), manganese (Mn), chromium (Cr), cobalt (Co) and nickel (Ni) and sulphur (S), the latter to count growth increments. Whatever the species, a Ca pit consistently marked the core; the amphidromous species exhibited Mn enrichment at the core and the sagitta forms a week before hatching. These results illustrate common otolith formation mechanistic processes. Sr and heavy metals’ signal in the pre-hatch zone were compared to their signal in the edge of the otolith, an area encompassing the adult freshwater (adFW) environmental signature. We found that Co and Ni otolith signals had no relation to environmental conditions, but it is worth looking into Cr as a marker of early-life environment. Finally, while we caution against the use of Sr:Ca ratio for life history interpretations at the core because of the Ca pit, the Sr signal analysis uncovered possible variations in the parental behaviour that potentially trigger newly hatched juvenile migration to sea or residency. Our results demonstrate that the microchemistry of otolith forming during early development is a melting of maternal signal during egg yolk elaboration, of the environmental signal during egg incubation and of individual physiology during early growth
Individual carbon and nitrogen stable isotope compositions with length, weight, and trawling depth for twelve deep pelagic fish species from the Bay of Biscay, Northeast Atlantic, between 2007 and 2021.
No full textThe dataset contains individual carbon and nitrogen stable isotope compositions (δ13C and δ15N values, respectively) measured on 682 individuals belonging to 12 deep pelagic fish species (Aphanopus carbo, Arctozenus risso, Argyropelecus olfersii, Lampanyctus crocodilus, Lampanyctus macdonaldi, Melanostigma atlanticum, Myctophum punctatum, Notoscopelus kroyeri, Searsia koefoedi, Serrivomer beanii, Stomias boa, Xenodermichthys copei) collected on the Bay of Biscay slope, Northeast Atlantic. Individuals of all the species considered cover a wide range of lengths and weights. These parameters are reported individually as well as the trawling depth. Fish sampling was carried out by pelagic trawl in canyons of the continental slope of the Bay of Biscay during EVHOE scientific cruises ("Evaluation Halieutique de l'Ouest de l'Europe"; https://doi.org/10.18142/8) between 2007 and 2021. Trawls were conducted at night between 25 m and 2000 m depth at 17 stations. Each haul was conducted at a selected depth. Once the trawl reached the selected depth, it was towed horizontally (i.e. constant depth) at 4 knots for 1 hour. The average vertical mouth opening was about 24 m and the horizontal opening was about 58 m. Sub-samples for stable isotope analyses were taken from the white dorsal muscle (n= 682). In order to have sufficient material for isotopic analyses, small individuals belonging to the same size range and sampled in a similar depth range were pooled. Analyses were performed using an isotope ratio mass spectrometer (Delta V Advantage with a Conflo IV interface, Thermo Scientific) coupled to an elemental analyser (Flash EA, 2000; Thermo Scientific). Results are presented in the usual δ notation relative to the deviation from international standards (PDB for δ13C values, atmospheric nitrogen for δ15N values), in parts per thousand (‰). Based on repeated measurements of USGS-61 and USGS-62, used as internal laboratory standards, the experimental analytical precision was 3.5 in aquatic samples; Post et al., 2007)
3D models video of the Jurassic lobster Eryma ventrosum from the La Voulte-sur-Rhône Lagerstätte, France : female specimen UJF-ID11544.
No full textThis dataset includes data from a female specimen (UJF-ID11544) of the lobster Eryma ventrosum from the Middle Jurassic (~162 Myr) La Voulte-sur-Rhône Lagerstätte, France, obtained by synchroton X-ray microtomography. This is a video (mp4 format) showing the various 3D models in place
Référentiel hydrographique modélisé du territoire de l'Agence de l'Eau Seine-Normandie
No full textRéférentiel hydrographique couvrant le territoire de l'Agence de l'Eau Seine-Normandie. Il est composé de trois couches d'information SIG : le réseau hydrographique (couche de lignes) représentant le tracé des rivières, les bassins versant dits "élémentaires" associés à chaque linéaire de rivière (couche de polygones) et les bassins versants fluviaux (couche de polygones de regroupement des bassins versants élémentaires par fleuve). Ces données ont été produites avec le concours de l'Agence de l'Eau Seine-Normandie pour servir de référentiel dans les outils de modélisation développés au sein du programme PIREN-Seine. Le réseau est simplifié au niveau des confluences : il ne contient aucune diffluence (pas de bras secondaire sur les rivières, etc.)
Données de frise chronologique pour la Zone Atelier Alpes
No full textDes données hétérogènes décrivant l'évolution de la Zone Atelier Alpes ont été collectées, réunies, puis représentées sous la forme d'une frise chronologique à l'occasion de la rédaction du chapitre ZAA de l'ouvrage "Zones Ateliers, Un réseau de co-recherches sur les socio-écosystèmes : historique et perspectives". Ces données sont organisées selon les classes suivantes : "Faits externes', "Construction et développement", "Gouvernance et communication", "Thèmes de recherche", "Disciplines mobilisée", acteurs de la "Transdiciplinarité". Le protocole suivi est identique pour toutes les Zones Ateliers