KU Leuven Research Data Repository
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Replication data for: "Measuring vocabulary use in L2 English and L2 French writing: How methodological decisions shape the results"
Dataset for the statistical analyses in the paper: "Measuring vocabulary use in L2 English and L2 French writing: How methodological decisions shape the results". Data were collected from second language learners of English and French in secondary school (grade 10 and grade 12), who each completed a vocabulary test and writing tasks in both languages. The dataset contains participants' scores on the vocabulary tests and the values computed for several indices of vocabulary use in writing (lexical diversity and lexical sophistication). The indices were computed repeatedly for each participant, based on four operationalizations (two types of lemmatization and two types of word inclusion)
Howling Corrupted Music Speech (HCMS)
The database contains in total 28 music files and 30 speech files. The original speech files are taken from 8 original signals files including recorded male and female speech in four languages (Chinese, English, Dutch, and Russian) from an audiobook database [1]. while the original music files is taken from 7 pieces spanning various genres (e.g., jazz, opera) from 2 different music databases [2, 3]. Each file is a 20 s excerpt where the howling is simulated to start between the 8th and 9th second. This is simulated by feeding the music or speech source signal to a closed-loop system with a varying broadband gain. A total of 8 acoustic impulse responses (AIRs) were used for the simulations, hence covering a wide range of howling frequencies. The final dataset1 contains fewer excerpts than the number of excerpts originally generated, as it went through a pruning step conducted by three experts, aiming to eliminate unsuitable examples (exhibiting howling at multiple howling frequencies or no howling at all). For more details see Ch. 7 of" Acoustic Event Detection: Feature, Evaluation and Dataset design", PhD thesis Mina Mounir.
[1] Kearns, J.: LibriVox: Free Public Domain Audiobooks. Emerald Group Publishing
Limited (2014)
[2] Emiya, V.: MAPS Database: A piano database for multipitch estimation and automatic transcription of music. http://www.tsi.telecom-paristech.fr/aao/en/2
010/07/08/maps-database-a-piano-database-for-multipitch-estimation-and-aut
omatic-transcription-of-music/ (2008)
[3] Defferrard, M., Benzi, K., Vandergheynst, P., Bresson, X.: FMA: A DATASET
FOR MUSIC ANALYSIS. Proc. 18th Int. Symp. on Music Information Retrieval
(ISMIR ’17), 8 (2017
Metabolic Dysfunction-Associated Steatohepatitis (MASH) GeoMx and COMET Dataset
This dataset comprises high-resolution, multiplexed immunofluorescence image of an explant liver generated using the COMET spatial biology platform and spatial transcriptomics generated by the nanoString GeoMx platform on MASH F3 biopsies. The dataset has been used in the related publication
Replication Data for: Evolution of tolerance to chlorpyrifos causes cross-tolerance to another organophosphate and a carbamate, but reduces tolerance to a neonicotinoid and a pharmaceutical
Exposure to pesticides is a major stressor in freshwater ecosystems. While populations can evolve tolerance to pesticides and thereby ensure their persistence in contaminated environments, this may have important consequences for their sensitivity to other pollutants. Indeed, tolerance to one pollutant may both increase (as a cost of tolerance) or decrease (cross-tolerance) the sensitivity to other pollutants. Despite the increasing concern of pharmaceuticals in waterbodies, no patterns of pesticide-induced (cross-)tolerance have been studied. We conducted 48 h acute toxicity assays with a range of concentrations of different pollutants to determine how the evolution of tolerance to the insecticide chlorpyrifos affects the sensitivity to other pesticides and a pharmaceutical in the water flea Daphnia magna, a keystone zooplankton species in aquatic food webs. We capitalized on an experimental evolution trial with chlorpyrifos, hence could unambiguously identify any patterns in increased tolerance or sensitivity to the other pollutants as a direct result of the evolution of tolerance to chlorpyrifos. We found that evolution of tolerance to chlorpyrifos conferred cross-tolerance to another organophosphate, namely malathion (mean change in EC50,48h: factor 3.1), and to the carbamate carbaryl (factor 1.7), confirming that a shared mode of action favours the evolution of cross-tolerance. While the evolution of tolerance to chlorpyrifos did not affect the sensitivity to the pyrethroid esfenvalerate, it increased the sensitivity to the neonicotinoid imidacloprid as shown by the decrease in EC50,48h (factor 0.6). Notably, we demonstrated for the first time that the evolution of tolerance to a pesticide increased the sensitivity to a pharmaceutical, namely fluoxetine (decrease in EC50,48h with factor 0.7), thereby identifying an overlooked cost of tolerance to a pesticide. Given the increasing exposure to pesticides and pharmaceuticals, our results highlight that considering cross-tolerance and costs of tolerance is crucial in risk assessment of both pesticides and pharmaceuticals in aquatic ecosystems
Replication Data for: Bearing housing as a sensor: Estimation of lumped bearing loads using accurate housing models
Raw data for the paper titled "Bearing housing as a sensor: Estimation of lumped bearing loads using accurate housing models". The data is related to the experimental validation of the paper which is outlined in section 5. The data contains the following: 1) STL files related to the scanned bearing housing components, 2) load and speed profiles used as inputs to the motor and actuator of the setup, 3) measured load and speed signals of the setup, 4) measured acceleration and strain responses of the setup, 5) model of the bearing housing with operational boundary conditions. The ".mat" data can be accessed via MATLAB or GNU Octave (open access). The ".stl" data can be accessed via numerous open source software such as FreeCAD, Blender etc
Replication Data for: PRISM: Simple and Compact Identification and Signatures from Large Prime Degree Isogenies
SageMath implementation of PRISM: PRime degree ISogeny Mechanism.
We give a proof of concept implementation of PRISM. In some cases, cleaner and more readable code is preferred over a fully optimized implementation.
The code, and in particular the ideal-to-isogeny translation algorithm, is based on the SQIsign2D-West SageMath implementation, which has been privately shared with us by the authors. This can be found in the folder sqisign2d_west. The code to compute (2,2)-isogenies using theta coordinates is based on ThetaIsogenies/two-isogenies. It can be found in theta_isogenies and theta_structures. The Kummer line code is based on FESTA-PKE/FESTA-SageMath. It can be found in montgomery_isogenies
Altered muscle transcriptome as molecular basis of long-term muscle weakness in survivors from critical illness
Data integrated in the manuscript “Altered muscle transcriptome as molecular basis of long-term muscle weakness in survivors from critical illness”.
Background: Critically ill patients requiring intensive care unit (ICU) admission suffer from muscle weakness that persists for years, compromising quality-of-life. The pathophysiology of this long-term weakness remains unclear. We hypothesized that former ICU-patients show a long-term abnormal RNA-expression profile, which may contribute to lower long-term strength and for which modifiable risk factors can be identified. Methods: This pre-planned secondary analysis of the EPaNIC-trial compared muscle transcriptomes of 115 former ICU-patients 5 years after critical illness and 30 matched controls with RNA-sequencing, followed by pathway over-representation and differential co-expression analyses of the differentially expressed RNAs. We used multivariable linear regression analyses to identify which of the abnormal RNA-expressions associated with the long-term muscle strength of the patients and to identify potential risk factors for the abnormal RNA-expressions. Results: In former patients, 234 down-regulated and 116 up-regulated RNAs were identified after adjustment for age, sex, and BMI. Pathway over-representation and further molecular and histological analyses indicated impaired mitochondrial energy metabolism, disturbed lipid metabolism, and increased collagen formation/fibrosis in former patients. Abnormal muscle RNA-expression in former patients correlated with lower long-term muscle strength. Several treatments given in-ICU and at 5-year follow-up associated with abnormal RNA-expression, most notably in-ICU early parenteral nutrition (early PN) and glucocorticoid use. Conclusion: Abnormal RNA-expression profiles 5 years after critical illness suggest disrupted mitochondrial function, disturbed lipid metabolism, and fibrosis, associated with lower long-term muscle strength and partly attributable to possibly avoidable risk factors. These findings open perspectives for prevention and possibly treatment of long-term muscle weakness after critical illness
Replication Data for: Effect of blockage on wind turbine power and wake development
This dataset contains the necessary information needed to reproduce the figures from the paper “Effect of Blockage on Wind Turbine Power and Wake Development” by Ndindayino, O., Puel, A., and Meyers, J., published in Wind Energy Science (2025).
The study investigates how flow blockage influences wind farm efficiency, using large-eddy simulations and developing an analytical model that shows promise for improving turbine power predictions under blockage conditions.
The dataset offers detailed insights into wake profiles, turbine power, thrust, and induction values, as well as the near-wake pressure distribution and momentum budget analysis
Replication code and data for: Cocooning Throughout Our Daily Lives: Evidence from a Multiscalar Analysis of Ethnic Activity Space Segregation in Rotterdam
This repository contains the R code and data needed to replicate the analysis in our paper "Cocooning Throughout Our Daily Lives: Evidence from a Multiscalar Analysis of Ethnic Activity Space Segregation in Rotterdam". The enclosed `renv.lock` file provides details of the R packages used. All code is organized in computational notebooks, arranged sequentially, with the main analysis in the in the /analysis folder and the cross-validation analysis in the /robustness-checks subfolder. Data required to execute these notebooks is stored in the `data/` folder. For further details, please refer to the enclosed 'README' file and the original publication
Dataset for the manuscript "Agrivoltaic cultivation of pears under semi-transparent panels reduces yield consistently and maintains fruit quality in Belgium"
Contains experimental data for the manuscript "Agrivoltaic cultivation of pears under semi-transparent panels reduces yield consistently and maintains fruit quality in Belgium".
This dataset spans three year of experimental results of pear agrivoltaic research in Bierbeek, Belgium, where environmental data, development data, yield data and postharvest data was gathered between 2021 and 2023. Here, the first publication of experimental results on pear production in an agrivoltaic system are summarized. As such, we highlight how pear production remains possible in a temperate maritime climate with the additional shading and in the modified microclimate of agrivoltaic sytems