1,720,970 research outputs found
Integrating Enzyme-Based Kinetics in Reactive Transport Models to Simulate Spatiotemporal Dynamics of Biomarkers during Chlorinated Ethene Degradation
No full textBiomarkers such as functional gene mRNA (transcripts) and proteins (enzymes) provide direct proof of metabolic regulation during the reductive dechlorination (RD) of chlorinated ethenes (CEs). Yet, current models to simulate their spatiotemporal variability are not flexible enough to mimic the homologous behavior of RDase functional genes. To this end, we developed new enzyme-based kinetics to model the concentrations of CEs together with the transcript and enzyme levels during RD. First, the model was calibrated to existing microcosm data on RD of cis-DCE. The model mirrored the tceA and vcrA gene expression and the production of their enzymes in Dehalococcoides spp. Considering tceA and vcrA as homologous instead of nonhomologous improved fitting of the mRNA time series. Second, CEs and biomarker patterns were explored as a proof of concept under groundwater flow conditions, considering degraders occurring in immobile and mobile states. Under both microcosm and flow conditions, biomarker-rate relationships were nonlinear hysteretic because tceA and vcrA acted as homologous genes. The mobile biomarkers additionally undergo advective-dispersive transport, which increases the nonlinearity and makes the observed patterns even more challenging to interpret. The model offers a thorough mechanistic description of RD while also allowing simulation of spatiotemporal dynamic patterns of various key biomarkers in aquifers
Modeling of enhanced in situ biodenitrification at different scales: Integration of microbiological, hydrogeochemical, and isotope biogeochemical processes
Full text linkPremi Extraordinari de Doctorat concedit pels programes de doctorat de la UAB per curs acadèmic 2017-2018En aquesta tesi s'ha desenvolupat un model de transport reactiu que integra tots els processos principals i secundaris que afecten la desnitrificació in situ induïda a diferents escales de treball. Així, l'eina obtinguda relaciona els processos biològics induïts quan s'afegeix un donador d'electrons a l'aqüífer amb els processos geoquímics (interacció aigua-roca) i la geoquímica dels isòtops. A la primera part de la tesi (Capítol 2) és on s'ha desenvolupat el model conceptual i on s'han establert les relacions que existeixen entre la microbiologia i la geoquímica prèvia de l'aqüífer a escala de batch. D'altra banda, també s'ha desenvolupat el model conceptual de tota la geoquímica isotòpica associada al procés (δ15N-NO3-; δ18O-NO3- i δ13C-DIC incorporant tota la geoquímica del δ13C). En aquest sentit, s'ha desenvolupat un dels models biogeoquímics més complets de la literatura relacionats amb la desnitrificació in situ induïda. El model s'ha calibrat emprant dos experiments a escala de batch realitzats amb etanol i glucosa com a fonts de carboni externa. En tots dos casos, s'han obtingut molt bons ajustos amb les dades experimentals. A més, el model també incorpora l'acumulació de nitrit en el cas de l'experiment de la glucosa. L'avaluació dels processos geoquímics induïts per l'EIB ha posat de manifest que en funció de la font de carboni s'indueixen processos de precipitació (en el cas de l'etanol) i processos de dissolució de carbonats (en el cas de la glucosa). Aquests dos processos poden alterar la velocitat de l'aigua i crear importants problemes operacionals durant l'EIB. També s'han incorporat els processos de fraccionament isotòpic del nitrat millorant l'avaluació de l'abast de la desnitrificació en els models a escala de camp. Un cop elaborat el model biogeoquímic que estableix el model conceptual que quantifica les interaccions entre els diferents processos que hi intervenen, el model s'ha escalat a un cas de desnitrificació induïda a escala de camp en un aqüífer fracturat (Roda de Ter (Osona, Espanya)). En aquest apartat de la tesi (Capítol 3), s'ha perseguit avaluar quin era l'impacte del canvi d'escala en els paràmetres biogeoquímics. A més a més, també s'ha determinat el canvi de porositat induïda per la precipitació de calcita. Finalment, la incorporació dels isòtops al RTM ha permès comparar qualitativament i quantitativament l'extensió dels processos de desnitrificació calculats pel RTM i per l'equació de Rayleigh. Els resultats demostren que l'equació de Rayleigh descriu bé, en termes qualitatius, l'extensió de la desnitrificació, però en general la subestima entre un 60 i un 80%. Finalment, un cop avaluada l'aplicabilitat del model tant a escala de batch com a l'escala de camp, s'ha desenvolupat un model que reprodueix diferents escenaris d'injeccions de carboni orgànic en un experiment de columna de llarga durada considerant els canvis sobre les propietats hidràuliques produïts pel creixement microbià. Així, s'ha determinat que el creixement del biofilm va augmentar set cops la dispersivitat, augmentant, per tant, la heterogeneïtat del sistema i, conseqüentment, es va produir un canvi del model conceptual del flux i del transport del transport normal al transport no-Fickià. Aquesta transició es va caracteritzar emprant un model de transferència simple de massa. A més a més, el model de llarga durada ha permès determinar que freqüències d'injecció més espaiades en el temps produeixen un impacte menor en les propietats hidràuliques del medi. A més a més, les estratègies d'injecció amb la relació Carboni:Nitrogen per sota de l'estequiomètrica es poden emprar per a minimitzar el risc de bioclogging mantenint les taxes de degradació, sempre i quan hi hagi una població important de microorganismes.In this thesis, an integrated reactive transport model has been developed that takes into account microbiology, geochemistry, and isotope geochemistry. The first section of the thesis (Chapter 2) addresses the development of a biogeochemical model with isotope geochemistry. The goal of this chapter is the setup of the conceptual relationships among microbiology, geochemistry, and isotope geochemistry (δ15N-NO3-, δ18O-NO3-, δ13C-DIC, and all geochemistry of δ13C) during Enhanced in situ Biodenitrification. Thus, one of the most complete biogeochemical models in the literature of EIB has been developed. The model was validated with a batch-scale biodenitrification experiment using groundwater and sediment from a Roda de Ter (Osona, Spain) site and two different external organic carbon sources, i.e., ethanol and glucose. In both cases, the model fit notably well with the experimental data. Moreover, the developed model also incorporated the nitrite accumulation observed in the glucose experiment. Consideration of the water-rock interaction in the model determined that if ethanol is used as an organic carbon source, carbonate mineral precipitation is induced, whereas if glucose is used, carbonate mineral dissolution is observed. Moreover, nitrate isotope incorporation facilitated the determination of the extent of denitrification at the field scale. Finally, the incorporation of a carbon isotope flow in the model was another tool used to verify the full consistence of the model due to the central role of inorganic carbon in biodenitrification and water-rock interactions. Moreover, modeling of carbon isotope flow showed that both ethanol and glucose were inversely fractionated. After the conceptual model was carried out, it was applied to an Enhanced in situ Biodenitrification application in fractured media (also Roda de Ter (Spain)). The main goal of this chapter is to incorporate the groundwater flow equations into a previously develop biogeochemical model and to validate it in media with a complex hydrogeology. It was observed that certain batch parameters can be used directly in the field (maximum consumption rate of electron donor (kmax) and stoichiometric relationships) and that the other parameters (saturation constants (Ks) and decay (b)) should be adapted, but the modifications involved less than one order of magnitude. Moreover, the induced calcite precipitation caused a change of porosity of less than 3%. As a secondary goal, the use of the Rayleigh equation to determine the extent of EIB was also verified from a practical perspective. The model demonstrated that the Rayleigh equation underestimated the percentage of degradation by approximately 60-80% and increasingly at the fringes of the plume. Chapter 4 focuses on a model that reproduces the system under different injection conditions and with the presence of important biofilm growth. This chapter evaluates how different feeding strategies modify the hydraulic properties of the media. It was observed that a weekly feeding strategy did not modify the hydraulic properties of the media, whereas daily feeding significantly modified the dispersivity. These changes in dispersivity implied an increase in heterogeneity and a consequent change in the conceptual model of flow transport along the column from normal to non-Fickian. This transition was well characterized using a single-rate mass transfer model. Moreover, the long-term model demonstrated that use of a feeding strategy with less carbon than predicted by stoichiometry implied a reduction of biomass without a reduction in nitrate degradation rates (because of the presence of an important biomass population). Overall, the elaboration of this thesis has contributed to the knowledge of all processes involved in Enhanced in situ Biodenitrification and their quantification using numerical models. The developed model will allow improvement in the design, planning, monitoring and optimization of this technology at the field scale
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
Decomposing the Bulk Electrical Conductivity of Streamflow To Recover Individual Solute Concentrations at High Frequency
No full textThe ability to evaluate stream hydrochemistry is often constrained by the capacity to sample streamwater at an adequate frequency. While technology is no longer a limiting factor, costs and sample management can still be a barrier to high-resolution water quality instrumentation. We propose a new framework for investigating the electrical conductivity (EC) of streamwater, which can be measured continuously through inexpensive sensors. We show that EC embeds information about individual ion content that can be isolated to retrieve solute concentrations at high resolution. The essence of the approach is the decomposition of the EC signal into its "harmonics", i.e., the specific contributions of the major ions that conduct current in water. The ion contribution is used to explore water quality patterns and to develop algorithms that reconstruct solute concentrations starting from EC during periods where solute measurements are not available. The approach is validated on a hydrochemical data set from Plynlimon, Wales, showing that improved estimates of high-frequency solute dynamics can easily be achieved. Our results support the installation of EC probes to complement water quality campaigns and suggest that the potential of EC measurements in rivers is currently far from being fully exploited.ECH
koamabayili/VECTRON-author-checklist: VECTRON author checklist
No full textWe have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
- …
