3 research outputs found
DINAMIKA DAN STRUKTUR PENDAPATAN USAHATANI PADI D! SULAWESI TENGGARA
No full textThe research was aimed at knowing the rice dynamic in Kendari and Kolaka Regency, Southeast Sulawesi, including the increase trend of areas, production and productivity, yield and rice price, and the structure of rice farming system before and after the increase of fuel's price. The research used the secondary data collected from 1995 to 2004 and primary data collected by a survey method involving 40 farmers in each- regency started from February till March 2006. The results showed that the rice production increased by 1.37% per year although the harvest area decreased to 0.06% per year. Kolaka's rice production contributes 30% and Kendari contribution is 50.39% of the total province rice production. The development of post harvest rice price (from 2000-2004) showed an average increase of 8.39% per year while the rice price paid by consumers increased 7.06% per year. Therefore, the rice price on the farmer's level was around 41.07% per year. From the financial analysis point of view, this indicated that the farmers' income in Kendari increased by 20.87% and the farmers' income in Kolaka increased by 22.73% as compared to before and after the increase of fuel's price. The increase of price was due to the increase of rice price from Rp.1.100,- /kg to Rp.1.350,- /kg of yields (dried rice) or an increase of 22.75%. Key words: dynamics, income, rice farming system. Penelitian bertujuan untuk mengetahui dinamika padi di Sulawesi Tenggara yang menyangkut trend luas area, produksi dan produktivitas, perkembangan harga gabah dan beras, serta struktur pendapatan usahatani padi antara sebelum dan sesudah kenaikan harga bahan bakar minyak (BBM). Penelitian menggunakan data sekunder dari tahun 1995 — 2004 dan data primer. Untuk mengetahui struktur pendapatan usahatani padi dilakukan survey pada bulan Pebruari — Maret 2006 di sentra produksi padi Sulawesi Tenggara, yaitu Kabupaten Kendari (Desa Langgomea dan Duriaasi) dan Kabupaten Kolaka (Desa Mowewe dan Tahoa) terhadap 40 petani di setiap kabupaten. Hasil penelitian menunjukkan produksi padi meningkat 1,37% per tahun walau luas panen menurun 0,66% per tahun. Kontribusi produksi dari Kabupaten Kendari dan Kolaka sebesar 50,39% dan 30% dari total produksi provinsi. Perkembangan harga gabah (periode 2000 — 2004) meningkat rata-rata 8,39% per tahun sedangkan harga beras yang dibayar konsumen meningkat 7,06% per tahun, dengan demikian harga gabah di tingkat petani sekitar 41,07% dari harga beras. Analisis finansial usahatani padi selama dua musim tanam (MT 1 dan MT 11) yaitu periode sebelum dan sesudah kenaikan harga bahan bakar minyak (BBM) Oktober 2005 menunjukkan bahwa pendapatan yang diterima petani di Kabupaten Kendari meningkat 20,87% dan pendapatan petani di Kabupaten Kolaka meningkat 22,73%. Peningkatan pendapatan ini disebabkan oleh harga gabah di tingkat petani meningkat 22,75% dari Rp.1.100/kg gabah kering panen (GKP) menjadi Rp.1.350/kg GKP.Kata kunci: dinamika, pendapatan, usahatani padi Kata kunci: dinamika, pendapatan, usahatani pad
Plurality In Academic Tradition: The Case of Lecturers? Educational Background at the Graduate School Syarif Hidayatullah State Islamic University (UIN) Jakarta from 1982-2014
No full textThis book initially was a research which is completed and
submitted to the Graduate School Syarif Hidayatullah State Islamic
University (UIN) Jakarta, as a partial fulfillment of the requirements for
the degree of Master of Islamic Education.
The idea of the book originated primarily from a reality that
diversity occurs in all educational levels. For the UIN cases, the
phenomena of diversity can be noticed from its academic community;
whether it comes from different social or religious organizations,
educational background, cultural or ethnicity, countries or even
religions. Hence, as a unique institution which produces a distinct
tradition of Islamic studies, the UIN provide lecturers with different
scholarly tradition; either graduated from the Eastern, Western or local
universities.
To that end, I performed a research and focused merely on
lecturers? educational background to understand further how they dealt
with differences, in particular concerning the impact on students? work. I
presumed that lecturers struggled with internal conflicts since the
background has different educational tradition. The Western, Eastern
and local educational traditions have been explored further in this book
chapter to help readers understand these different entities respectively.
By exploring the notion of collaboration which closely related
with conflict resolution, I ended up with a conclusion that the East-West
tension nowadays have been melted, although not entirely. I argued that
lecturers? collaboration not only can be traced through the intrapersonal
or interpersonal aspects. The need to combined those two levels with an
additional aspect, the epistemological dimension; become substantial.
This statement can be verified since the epistemological dimension of
lecturers? educational background becomes the basis on both side to
work collaboratively. This general finding indicated that two salient
factors that support the process of lecturers? collaboration, including
their background as a pesantren graduates and their participation to
promote the Indonesian Islam. By having a team-work, they construct
the idea to promote the moderate culture amid academic community.
With this finding, I reaffirm a general statement which declared the
Graduate School UIN Jakarta as a smelting place. My hope that these
findings will give a positive contribution on discussion toward research
on East-West relationship, diversity and equity, lecturers? collaboration,
and professional communities. In view of that, I realized that this research to some degree is a
collaboration of so many people whom I cannot mention their names one
by one proportionally in this acknowledgment. For this reason, I would
like to express my sincere thanks and gratitude to all of people who have
assisted me in completing my study and in particular in finishing this
research.
First of all, I would like express my deepest gratitude to the
Graduate School, which delivers to the Rector of UIN Jakarta, Prof. Dr.
Dede Rosyada, MA; the Director of the Graduate School, Prof. Masykuri
Abdillah, MA; and to both Chairpersons of Doctoral and Master degree,
Prof. Didin Saepudin, MA and JM Muslimin, PhD. My deepest gratitude
also delivers to my thesis supervisor, Prof. Dr. Komaruddin Hidayat, MA
whose sharp criticism and insightful comments have made this work
much better that I could predict before. The choice of the Graduate
School as the focus of this study also owes much to his constructive
comments on my earlier proposal. Thanks to share the idea and
encourage me during every phase of my study.
My deepest appreciation also goes to all my lecturers who have
shared their knowledge and experiences during their lectures and
personal conversation with me. I owe much to Prof. Dr. Azyumardi Azra,
MA; Prof. Suwito, MA; Prof. Iik Arifin Mansurnoor, MA; Prof. M. Atho
Mudzhar, MSPD; Prof. Huzaemah Tahido Yanggo, MA; Prof. Yunan
Yusuf, MA; Prof. Zainun Kamaluddin Fakih, MA; Prof. Abuddin Nata,
MA; Prof. Abdul Mujib, MA; Prof. Murodi, MA; Fuad Jabali, PhD;
Yusuf Rahman, PhD; Muhammad Zuhdi, PhD; Dr. Abd. Chair; Ahmad
Luthfi Fathullah, MA; Asep Saepudin Jahar, PhD; Ayang Utriza Yakin,
PhD; Ahmad Dardiri, MA; Suparto, PhD; Usep Abdul Matin, PhD; Dr.
Gazi, MA. I also like to extend my gratitude to Prof. Quraish Shihab,
MA; Prof. A. Malik Fadjar, MA; Prof. Ahmad Aziz Dahlan, MA; Prof.
Zaitunah Subhan, MA; Prof. Yunasril Ali, MA; Prof. Nasaruddin Umar,
MA; Prof. Husni Rahim, MA; Bambang Suryadi, PhD; Yeni Ratna
Yuningsih, PhD; Nurlena Rifa?i, PhD; Didin Syafrudin, PhD; Din Wahid,
PhD; Ali Munhanif, PhD; and other lecturers. Their patience, feedback,
and comments were remarkable in guiding my study. To have had the
opportunity to learn from each of them is my privilege.
My deepest gratitude also goes to Dr. Shirley Baker from Alliant
University, California, USA; Prof. Dr. Margareth Gfrerer from DAAD
Scholarship Program, Germany; and Prof. Andi Faisal Bakti, MA; who
taught me the way to create a good academic writing. Although in this
study the author is still a beginner, yet this thesis become the first work
which developed in English language. I am grateful to them for allow me to join in their classes as a Master student representative among the
Doctoral candidates of the Graduate School in which I learned so much.
In addition, I would like to give my sincere thanks and
appreciation to PPIM UIN Jakarta. Special thanks deliver to the
directors: Saiful Umam, PhD; Dadi Darmadi, PhD; and Ismatu Ropi,
PhD; who provide lots of events related with the research on Islamic
Studies, such as seminars, conferences and even references in which I
collected the materials needed for writing this thesis. Other thankfulness
delivers to STFI Sadra with similar events in Islamic philosophy. Special
thanks go to Pak Dani Nur Fajar and Kak Rintis Mulya; who always
inform and delivers invitations for those events. By participating those
events I gain lots of information to enhance my knowledge in Islamic
studies.
Not less importantly, I also owe much to Bu Zulfa Indira
Wahyuni, M.Psi; as the secretary of my thesis supervisor. Thanks for
facilitate and arrange schedules for my meeting with the professor. I also
owe much to the Research Library of the Graduate School, from which I
collected the materials needed for writing this thesis. Special thanks to
Bu Alfida, Pak Imron and Mas Rofiq. Furthermore, the completion of
this study would not be possible without support and help from members
of the Graduate School. I am really indebted to Mas Arief, Mas Adam,
Kak Vhemmy, Kak Ima, Kak Nisa, Kak Haula Noor, Kak Windy, Pak
Nanang, Mas Jayadi, Mas Ikin, Mas Tony, Pak Anin, Mpok Siti, Pak
Rodian, Pak Muhali, Pak Opih, Pak Teguh, Pak Zul, Pak Nisan, Pak
Odang, Pak Rojalih (alm.), and other members of the Graduate School.
My gratitude goes next to Yayasan Al-Mas?udiyah, Sukabumi. I
would like to express my heartfelt gratitude to all the asa>ti>dh and santris
at the Pesantren Miftahul Huda Al-Mas?udiyah, Rindu Alam, Sukabumi.
A place where I was raised and educated with the religious sciences. A
place with a tranquility which stimulate me to learn more about ad-di>n
and pursue further for a higher degree in learning. My deepest gratitude
delivers to Abah Didi (KH. Syeikh Ibnu Mas?ud Rd. Didi Djajadinata);
Drs. Ade Suwardi Mufti Al-Huda; Ibu Hetty Munigar; H. Abdulrohman;
Drs. KH. Mustafidin Ahmad; Ust. H. Abdul Madjid, SM, MM.Pd (alm.);
Ust. H. Rahmat Saleh, S.Ag.
In particular, to my former college, STAI Al-Mas?udiyah; as a
place for me to express my notion in which I dedicated with. The
completion of this study would not be possible without the support from
the member of this institution. I would like to express my sincere
appreciation and thanks to Ust. H. Ahmad Bisri Musthafa, MA; Ust. Dr.
Ahmad Izzan, MA; Ust. Ade Djuanda, M.Ag (alm.); Ust. Drs. Soheh Abdurahman, M.Pd; Ibu Euis Andriani, M.Pd; Ust. Hoerudin, MA; Ust.
Zarqoni Heryanto, SE; Ust. Ariza Ajiwinata, SHI; Umi Khaeratunnisak,
S.Ag; Ust. Yudi Ruswandi, S.Pd.I; Ust. Asep Rijwan Suhendi, S.Pd.I;
Ust. Entis Sutisna, SHI; and other academic staff and lecturers. Other
thankfulness also delivers to Pesantren Al-Bayyinah, Muara Sanding,
Garut; as the first place at Indonesia that introduced to my family and
stayed before transferal to Sukabumi. My deepest gratitude delivers to
Abah Anwar (KH. Anwar Musaddad); Abah Yusuf (KH. Yusuf
Tauzirie); and to their family KH. Cecep Abdul Halim, Lc and Ibu Hj.
Lilis Nurjanah. My gratitude also delivers to Jemaah Salam Singapore
and Jemaah Al-Kautsar Batam; specially for mama Haslinda, uncle
Jailani, uncle Hamzah, uncle Jamaludin, and to all jemaahs. Thanks to
become my family in this world and the next. Their support and pray
from the beginning to the end of my study was extraordinary.
My thanks also deliver to my tutors and friends in the foreign
languages: to Mr. Harris, Herr Sonny, Yusuf Altuntas abi, Ibrahim
Terzioglu abi, Mr. Arthur Gubaydullin, Monsieur Abdelaziz Abbaci, Mr.
Abo Bakr Chalifa Amtar Ali, Simona Sienkiewicz, Jameela Musorma,
Farzona Saidova, Siti Maleekah, Siti Jannah. To my classmates, from the
Doctoral candidates in the year 2014/2015: Bu Rosdiana, Bu Rubiyanah,
Bu Yuke, Bu Suryani, Bu Nikmah, Bu Husnul, Bu Nisa, Bu Yanti, Pak
Mahmud, Pak Ayyub, Pak Hanafi, Pak Farhan, Pak Marsaid, Pak
Fauzani, Pak Afwan, Ust. Azmi, Pak Yoyo, Pak Udin, Pak Isa, Pak
Uksan, Ust. Istikhori, Pak Yusri, Pak Wari, Pak Pendeta (Hannas), Pak
Budi, Pak Fauzani, Pak Asep, Pak Syam, Pak Ayatullah, Pak Mujahid,
Pak Iman, Pak Julian, Dahrul Abi, Mas Sofi, Abg Zakaria, Abg
Zulfarizal. To my classmates from Master candidates in the year
2014/2015: Liana, Nurul, Mbk Izzah, Meta, Bu Zuraida, Bu Junaidah,
Zulfa, Arliana, Kak Khalilah, Syifa Abla, Mbk Yuni, Abg Sahlan, Abg
Amir, Abg Akmal, Bro Oka, Bro Nawir, Bro Tamam, Abg Harahap, Bro
Alwi, Bro Fauzan, Ust. Hizbullah, Bro Fawzi, Ust. Atho, Ust. Yunal,
Ust. Daud, A Anwar, A Komar, Bg Afif, Ust. Aziz, Bg Alfiandri, Bg
Zulkifli, Bro Imam, Ust. Sirojuddin, Bg Luthfi, Ust. Anang, and the
others. To my friends in the women quite room (WQR): Bu Nurlaila, Bu
Ainal, Bu Fadhlina, Bu Ida Musdafia, Kak Deffi, Unni Yeni, Kak Roza,
Bu Wulan, Kak Rifqy, Mutiara. Also other friends whom I recognized:
Pak Ali Halidin, Pak Idrianto Faishal, Pak Paulus Tasik Galle, Pak
Appriliantoni, Pak Daminto, Pak Yahya Agil, Pak Saparudin, Mas Adzan
Noor, Bu Any Widayatsari, Kak Wina Tresna Rahayu, Bu Umi Kulsum,
Bu Nuraini, Kak Ngainurrahmah, Abg Zain, Bro Yudril, Bro Fadhil, Bro
Hafidz, A Sansan, Mas Ainun, Kak Dewi Sutrisna, Kak Sonia, Abg Ikhwan, Bg Iwan, Bro Rof?il, Abg Mas?adi, Teh Rika, Vhya, Hasna, A
Fahmi, Bu Ipah, Bro Rama, Bro Adit, Mas Adeni, and other friends
whom I cannot mention their names one by one proportionally. Special
thanks to all of them who has helped me differently formulate my ideas
and enjoy the difficult time I had to face during the completion of my
study in Jakarta.
Not less importantly, also to those who act as my teacher and
friends: Pak Mu?min, Ust. Anshor, Pak Umar, Mr. Iksan, Pak Irawan,
Pak Hasan, Pak Zulfis, Pak Umar Syam, Pak Irvani, Pak Amir, Pak Asep
Saepulloh, Romo Gregorius Soetomo, Abg Irham; whose valuable
criticism and comments have helped me shape the focus of my study.
Also to Buya Ihsan Ahmad and to my Libyan friend?s, Bro Othman
Eltalis; who helped me to read and retranslate by using an appropriate
Arabic language for the abstract of this thesis. Thanks for taking the
time amid the bustle of activities. Thanks for the kindness and
encouragement.
To the one and my only sister, Masayu Fatimah Azzahrah Bte
Masagos Zainudin, I owe you many things for your sincere support and
help during the completion of this study. Thanks for having a great
discussion about our study while keep on accompany my loneliness in
Jakarta. Thanks to become the best sister and I promise to spend my
time more with you again after finishing the writing.
Above all, my deepest respect and gratitude go to my big family
at Singapore, the family of Masagos and Ibrahim. The most importantly
to my parent, Masagos Zainudin Bin Masagos Mohamad and Selina Bte
Ibrahim who always motivate with their loves and pray for my life. Their
decision to put me and my sister to learn and lives more at Sukabumi is
the best selection to gain more worthy life provision. Both affection for
us is one of the sublime realities of worldly life, therefore, filial gratitude
to them is a most urgent and tireless duty. Thanks for sacrifice your life
for both of us. Jazakalla>h ah}san al-jaza>?!
All praise is due to the Lord, the Almighty, who gives the
breath, the strength ? in truth everything ? to this humble servant. He
indeed, who taught me and assisted me in this life journey.
Alh}amdulilla>hi h}amdan kathi>ra>
Gene content, phage cycle regulation model and prophage inactivation disclosed by prophage genomics in the Helicobacter pylori Genome Project
No full textProphages can have major clinical implications through their ability to change pathogenic bacterial traits. There is limited understanding of the prophage role in ecological, evolutionary, adaptive processes and pathogenicity of Helicobacter pylori, a widespread bacterium causally associated with gastric cancer. Inferring the exact prophage genomic location and completeness requires complete genomes. The international Helicobacter pylori Genome Project (HpGP) dataset comprises 1011 H. pylori complete clinical genomes enriched with epigenetic data. We thoroughly evaluated the H. pylori prophage genomic content in the HpGP dataset. We investigated population evolutionary dynamics through phylogenetic and pangenome analyses. Additionally, we identified genome rearrangements and assessed the impact of prophage presence on bacterial gene disruption and methylome. We found that 29.5% (298) of the HpGP genomes contain prophages, of which only 32.2% (96) were complete, minimizing the burden of prophage carriage. The prevalence of H. pylori prophage sequences was variable by geography and ancestry, but not by disease status of the human host. Prophage insertion occasionally results in gene disruption that can change the global bacterial epigenome. Gene function prediction allowed the development of the first model for lysogenic-lytic cycle regulation in H. pylori. We have disclosed new prophage inactivation mechanisms that appear to occur by genome rearrangement, merger with other mobile elements, and pseudogene accumulation. Our analysis provides a comprehensive framework for H. pylori prophage biological and genomics, offering insights into lysogeny regulation and bacterial adaptation to prophages. © 2024 The Author(s). Published with license by Taylor & Francis Group, LLC.The HpGP was mainly supported by the Intramural Research Program from the US National Cancer Institute (NCI), National Institutes of Health (NIH). This work was supported in part by the intramural research programs of the US National Library of Medicine, the US National Institute on Minority Health and Health Disparities, and the US National Institute of Allergy and Infectious Diseases. FFV is funded by Funda\u00E7\u00E3o para a Ci\u00EAncia e a Tecnologia (FCT) through project grants (project PTDC/BTM-TEC/3238/2020 and CPCA-IAC/AV/478719/2022) that partially supported this work, alongside national funds from FCT projects UIDB/04138/2020, UIDP/04138/2020, and UIDB/04046/2020 (DOI: https://doi.org/10.54499/UIDB/04046/2020). The collaborating centers for sample collection received grant support from the US NIH (P01CA116087, R01CA077955, R01DK058587 and P30DK058404 to R.M.P||P01CA028842 and R01CA190612 to K.T.W||P01CA028842, R01CA190612, K07CA125588, R03CA167773 and P30CA068485 to D.R.M||K08CA252635 to R.J.H., K22CA226395 to M.G.-P||and U54GM133807 to M.C.-C.), the German Federal Ministry of Education and Research (BMBF-0315905D, ERA-NET PathoGenoMics to P.M.), the French Association pour la Recherche Contre le Cancer (8412 to F.M.), the French Institut National du Cancer (07/3D1616/IABC-23-12/NC-NG and 2014-152 to F.M.), the Canceropole Grand Sud-Ouest (2010-08-canceropole GSO-Universite Bordeaux 2 to F.M.), the Japanese National Institutes of Health (DK62813 to Y.Y.), the Japanese Ministry of Education, Culture, Sports, Science, and Technology (18KK0266, 19H03473, 21H00346 and 22H02871 to Y.Y.), the National Fund for Innovation and Development of Science and Technology from the Ministry of Higher Education Science and Technology of the Dominican Republic (2012-2013-2A1-65 and 2015-3A1-182 to M.C.), the National Cancer Center of South Korea (2210630, I.J.C.), ArcticNet (RES0010178 to K.J.G.), the Network of Centres of Excellence of Canada, the Canadian Institutes for Health Research (MOP115031 to K.J.G.), Alberta Innovates Health Solutions (201201159 to K.J.G.), the University of Malaya-Ministry of Higher Education (UM.C/625/1/HIR/MOHE/CHAN-02 to J.V.), the Ministry of Science and Technology of Vietnam, the Kyrgyz State Medical Academy, the Italian Ministry of Health for Institutional Research, the Chilean National Fund for Health Research and Development (FONIS A19/0188, FONDECYT 1230504 and ANID-FONDAP 152220002 to A.R||ANID-FONDAP APOYO 1523A0008CONICYT-FONDAP and FONDECYT 1231773 to A.H.C.), the Chilean Cancer Prevention and Control Center, the Horizon 2020 Programme of European Union (825832, \u201CCeLac and European consortium for a personalized medicine approach to Gastric Cancer,\u201D LEGACy, to T.F.-K. and A.R.), the Funda\u00E7\u00E3o de Amparo \u00E0 Pesquisa do Estado de S\u00E3o Paulo (FAPESP; 2014/26847-0, 2018/14267-2, 2018/02972-3 to E.D.-N.), the Departamento de Ci\u00EAncia e Tecnologia (DECIT), Ministry of Health, Brazil (PRONON, SIPAR 2500.035-167/2015-23 to E.D.-N.), the Conselho Nacional de Desenvolvimento Cient\u00EDfico e Tecnol\u00F3gico (CNPq, 314344/2020-9 to E.T.-S.), the Universidad de Costa Rica (742-B9-310 and 742-90912-19 to V.R.-M.), LABGIPAT (S.D.-B.), the Hospital Cl\u00EDnica B\u00EDblica (C.C.-N.), the Greek Ministry of Culture and Education (InfeNeutra Project, NSRF 2007-2013, MIS450598, D.N.S.), the National Strategic Reference Framework Operational Program \u201CCompetitiveness, Entrepreneurship and Innovation\u201D (NSRF 2014-2020, MIS5002486, D.N.S.), the Hellenic Helicobacter pylori Study Group (2012-2016, B.M.-G.), the Hellenic Society of Gastroenterology (National Multicenter Laboratory Surveillance Studies, 2018-2019, B.M.-G.), the Ministry of Science and Technology, Executive Yuan, Taiwan (109-2314-B-002-096; MOST 111-2314-B-002-012; MOST 109-2314-B-002-090-MY3 to J.-M.L. and M.-S.W.), the National Research Foundation of Singapore, the Singapore Ministry of Health\u2019s National Medical Research Council (Open Fund-Large Collaborative Grant, MOH-OFLCG18May-0003), the University of Puerto Rico Comprehensive Cancer Center, the Fondo Nacional de Desarrollo Cientifico y Tecnologico (196-2015-FONDECYT to C.C.), Universidad Cient\u00EDfica del Sur, and Instituto Nacional de Enfermedades Neoplasicas (INEN, Peru). Our special thanks are extended to all the individuals who were the hosts of the Hp GP strain collection, who represent the human populations that bear the burden of H. pylori -associated disease, and whose biological samples serve to advance research aimed at reducing this disease burden
