290 research outputs found
Condition-specific gene coexpression in ATTED-II
No full textCondition-specific gene coexpression data provided in ATTED-II.
Obayashi et al. (2011) ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 52. 213-9.
https://pubmed.ncbi.nlm.nih.gov/21217125/
The condition-specific gene coexpression data are based on the following AtGenExpress expression data.
https://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp
bio: AtGenExpress biotic treatment
ME00341 (Carine Denoux , Fred Ausubel , Julia Dewdney , Simone Ferrari)
ME00353 (Xinnian Dong)
ME00331 (Birgit Kemmerling , Thorsten Nürnberger)
ME00332 (Frederic Brunner , Thorsten Nürnberger)
ME00342 (Dierk Scheel , Frederic Brunner , Lore Westphal)
ME00354 (Fred Ausubel , Julia Dewdney)
hor: AtGenExpress hormone treatment
ME00333 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00334 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00335 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00336 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00337 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00343 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00344 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00352 (Hideki Goda , Yukihisa Shimada)
ME00356 (Takatoshi Kiba , Takeshi Mizuno)
ME00357 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00358 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00359 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00360 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
lig: AtGenExpress light treatment
ME00345 (Thomas Kretsch)
str: AtGenExpress stress series
ME00325 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00326 (Holger Puchta , I-Peng Chen)
ME00327 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00328 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00329 (Jakub Horak , Klaus Harter)
ME00330 (Dierk Wanke , Klaus Harter)
ME00338 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00339 (Lutz Nover , Pascal von Koskull-Döring)
ME00340 (Andrea Ditzer , Dorothea Bartels , Hans-Hubert Kirch)
tis: AtGenExpress development
ME00319 (Detlef Weigel , Jan Lohmann , Markus Schmid
Condition-specific gene coexpression in ATTED-II (LS index)
No full textThe coexpression index has changed in recent versions of ATTED-II.
ATTED-II ver 11: z-score of LS index (larger value indicates stronger coexpression)
ATTED-II ver 10: LS index (larger value indicates stronger coexpression)
ATTED-II ver 4 to ver 9: MR index (smaller value indicates stronger coexpression)
To continue providing the condition-specific gene coexpression data, they were converted to z-score of the LS index.
ATTED-II ver 6.0 (September 2010): MR index. AGI (Arabidopsis Genome Initiative) code.
ATTED-II ver 11.0 (February 2021): z-score of the LS index. EGI (Entrez Gene ID)code.
Reference of condition-specific gene coexpression data in ATTED-II
Obayashi et al. (2011) ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 52. 213-9.
https://pubmed.ncbi.nlm.nih.gov/21217125/
Detail of the condition-specific gene coexpression data
The condition-specific gene coexpression data are based on the following AtGenExpress expression data.
https://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp
bio: AtGenExpress biotic treatment
ME00341 (Carine Denoux , Fred Ausubel , Julia Dewdney , Simone Ferrari)
ME00353 (Xinnian Dong)
ME00331 (Birgit Kemmerling , Thorsten Nürnberger)
ME00332 (Frederic Brunner , Thorsten Nürnberger)
ME00342 (Dierk Scheel , Frederic Brunner , Lore Westphal)
ME00354 (Fred Ausubel , Julia Dewdney)
hor: AtGenExpress hormone treatment
ME00333 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00334 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00335 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00336 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00337 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00343 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00344 (Hideki Goda , Shigeo Yoshida , Yukihisa Shimada)
ME00352 (Hideki Goda , Yukihisa Shimada)
ME00356 (Takatoshi Kiba , Takeshi Mizuno)
ME00357 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00358 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00359 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
ME00360 (Hideki Goda , Shigeo Yoshida , Tadao Asami , Yukihisa Shimada)
lig: AtGenExpress light treatment
ME00345 (Thomas Kretsch)
str: AtGenExpress stress series
ME00325 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00326 (Holger Puchta , I-Peng Chen)
ME00327 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00328 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00329 (Jakub Horak , Klaus Harter)
ME00330 (Dierk Wanke , Klaus Harter)
ME00338 (Cecilia D`Angelo , Joachim Kilian , Joerg Kudla , Oliver Batistic , Stefan Weinl)
ME00339 (Lutz Nover , Pascal von Koskull-Döring)
ME00340 (Andrea Ditzer , Dorothea Bartels , Hans-Hubert Kirch)
tis: AtGenExpress development
ME00319 (Detlef Weigel , Jan Lohmann , Markus Schmid
Fast Download but Eternal Seeding: The Reward and Punishment of Sharing Ratio Enforcement
No full textMany private BitTorrent communities employ Sharing Ratio Enforcement (SRE) schemes to incentivize users to contribute their upload resources. It has been demonstrated that communities that use SRE are greatly oversupplied, i.e., they have much higher seeder-to-leecher ratios than communities in which SRE is not employed. The first order effect of oversupply under SRE is a positive increase in the average downloading speed. However, users are forced to seed for extremely long times to maintain adequate sharing ratios to be able to start new downloads. In this paper, we propose a fluid model to study the effects of oversupply under SRE, which predicts the average downloading speed, the average seeding time, and the average upload capacity utilization for users in communities that employ SRE. We notice that the phenomenon of oversupply has two undesired negative effects: a) Peers are forced to seed for long times, even though their seeding efforts are often not very productive (in terms of low upload capacity utilization); and b) SRE discriminates against peers with low bandwidth capacities and forces them to seed for longer durations than peers with high capacities. To alleviate these problems, we propose four different strategies for SRE, which have been inspired by ideas in social sciences and economics. We evaluate these strategies through simulations. Our results indicate that these new strategies release users from needlessly long seeding durations, while also being fair towards peers with low capacities and maintaining high system-wide downloading speeds.Accepted Author ManuscriptData-Intensive System
Creation of function regulators of plant hormones and their application to physiology, genetics and agriculture
No full text
Creation of function regulators of plant hormones and their application to physiology, genetics and agriculture
No full text
観光地域づくりによる地域再生の評価に関する研究 : ドミニカ共和国プエルトプラタ県の事例
No full textCommunity development through tourism has attracted much attention from both practitioners and scholars. Tourism is believed to be able to rejuvenate deteriorating local communities through positive economic effects; particularly, it has the potential to revitalize local economies. However, tourism alone cannot improve communities because many issues hamper the management of community development and evaluation of its sustainability. This study examines the strategic planning of community development through tourism in Puerto Plata, the Dominican Republic, where an international cooperation project by the Japanese International Cooperation Agency was started in November 2009. We use a tentative evaluation methodology based on the nature of balance sheet to determine the potential of communities and outcomes of the development
Chemical regulators of plant hormones and their applications in basic research and agriculture*
No full textABSTRACTPlant hormones are small molecules that play versatile roles in regulating plant growth, development, and responses to the environment. Classic methodologies, including genetics, analytic chemistry, biochemistry, and molecular biology, have contributed to the progress in plant hormone studies. In addition, chemical regulators of plant hormone functions have been important in such studies. Today, synthetic chemicals, including plant growth regulators, are used to study and manipulate biological systems, collectively referred to as chemical biology. Here, we summarize the available chemical regulators and their contributions to plant hormone studies. We also pose questions that remain to be addressed in plant hormone studies and that might be solved with the help of chemical regulators.</jats:p
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