215 research outputs found
Building the content of CSR in the food chain with a stakeholder dialogue
No full textThe paper is concerned with the content of corporate social responsibility (CSR) in the food supply chains. The objective is to build the content of CSR in the food chain with a stakeholder dialogue. The research project takes an action oriented approach and is based on case studies. The project draws on three different case food products and their supply chains: rye bread, broiler chicken products and margarine. The content of CSR is constructed in interaction between researchers, consumers, companies and their interest groups. The research project combines the compilation and analysis of extensive information sources, constructive technology assessment and stakeholder workshops. The paper presents how the research process is proceeding in a dialogue with researchers, representatives of case companies, consumers and other stakeholders and provides results on important CSR issues related to the case food products and their supply chains.Corporate social responsibility, supply chain, stakeholders, Agribusiness,
Mycorrhizosphere concept
No full textSari Timonen, Petra Marschnerhttp://www.springer.com/life+sci/ecology/book/978-3-540-29182-
Kuusentaimien sienijuurien määrä ja laatu suomalaisilla metsätaimitarhoilla
No full textTutkimusselosteSeloste artikkelista: Flykt, E., Timonen, S. & Pennanen, T. 2008. Variation of ectomycorrhizal colonisation in Norway spruce seedlings in Finnish forest nurseries. Silva Fennica 42(4): 571–585
and its nest material
No full textIn this study, we investigated the bacterial and fungal microbiomes of the ant Formica exsecta (Hymenoptera, Formicidae), and assessed whether the microbial communities inside the ants differ from those in their nest material. Furthermore, we investigated whether the microbial communities inside the ants are conserved across time. To achieve this, we sequenced the bacterial 16S rRNA, and the fungal ITS region in entire adult worker ants and their nest material by Illumina MiSeq. We found that both the bacterial, and the fungal microbiomes form communities discrete from those in the surrounding nest material. In addition to the differences in species composition, we also found that bacterial species diversity, species richness, ? diversity, and evenness were lower in ants than in the nest material. For fungi, only species richness was lower in the ants than in the nest material. The rate of within-colony species turnover across sampling events was not statistically significant for bacteria, but highly significant for fungi. This suggests that the fungal communities in the ants are less stable than the bacterial ones. Four bacterial taxa (Alphaproteobacteria, Proteobacteria, Staphylococcus, and Streptococcus), and two fungal taxa (Davidiella and Cryptococcus) formed a core microbiome, being consistently present and more abundant in the ants, but absent in the nest material. In all other cases differences in community composition and structure were due to taxa that were more consistently present and more abundant in the nest material, and frequently absent in the ants. Furthermore, we found 36 unique OTUs identified as Proteobacteria, and 82 unique OTUs identified as Alphaproteobacteria in the ants, representing 2.5% and 5.8% of all bacterial OTUs and 24.6% and 41% of the total number of bacterial sequences. This suggests that F. exsecta harbours a considerable bacterial diversity that so far remains unexplored.Peer reviewe
The bacterial and fungal community composition in time and space in the nest mounds of the ant Formica exsecta (Hymenoptera : Formicidae)
No full textIn a subarctic climate, the seasonal shifts in temperature, precipitation, and plant cover drive the temporal changes in the microbial communities in the topsoil, forcing soil microbes to adapt or decline. Many organisms, such as mound-building ants, survive the cold winter owing to the favorable microclimate in their nest mounds. We have previously shown that the microbial communities in the nest of the ant Formica exsecta are significantly different from those in the surrounding bulk soil. In the current study, we identified taxa, which were consistently present in the nests over a study period of three years. Some taxa were also significantly enriched in the nest samples compared with spatially corresponding reference soils. We show that the bacterial communities in ant nests are temporally stable across years, whereas the fungal communities show greater variation. It seems that the activities of the ants contribute to unique biochemical processes in the secluded nest environment, and create opportunities for symbiotic interactions between the ants and the microbes. Over time, the microbial communities may come to diverge, due to drift and selection, especially given the long lifespan (up to 30 years) of the ant colonies.Peer reviewe
Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios
No full textCoastal ecosystems are highly dynamic and can be strongly influenced by climate change, anthropogenic activities (e.g. pollution) and a combination of the two pressures. As a result of climate change, the northern hemisphere is predicted to undergo an increased precipitation regime, leading in turn to higher terrestrial runoff and increased river inflow. This increased runoff will transfer terrestrial dissolved organic matter (tDOM) and anthropogenic contaminants to coastal waters. Such changes can directly influence the resident biology, particularly at the base of the food web, and can influence the partitioning of contaminants and thus their potential impact on the food web. Bacteria have been shown to respond to high tDOM concentration and organic pollutants loads, and could represent the entry of some pollutants into coastal food webs. We carried out a mesocosm experiment to determine the effects of: 1) increased tDOM concentration, 2) organic pollutant exposure, and 3) the combined effect of these two factors, on pelagic bacterial communities. This study showed significant responses in bacterial community composition under the three environmental perturbations tested. The addition of tDOM increased bacterial activity and diversity, while the addition of organic pollutants led to an overall reduction of these parameters, particularly under concurrent elevated tDOM concentration. Furthermore, we identified 33 bacterial taxa contributing to the significant differences observed in community composition, as well as 35 bacterial taxa which responded differently to extended exposure to organic pollutants. These findings point to the potential impact of organic pollutants under future climate change conditions on the basal coastal ecosystem, as well as to the potential utility of natural bacterial communities as efficient indicators of environmental disturbance.Errata: Rodríguez, J., Gallampois, C. M. J., Timonen, S., Andersson, A., Sinkko, H., Haglund, P., et al. Corrigendum: Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios. Front. Microbiol. 2019;10:2388. DOI: 10.3389/fmicb.2019.02388ECOCHANG
Spatial variations in bacterial and archaeal abundance and community composition in boreal forest pine mycorrhizospheres
No full textMycorrhizal fungi have a strong impact on soil biota. In this study, bacterial and archaeal populations in different parts of Suillus bovinus - Pinus sylvestris mycorrhizospheres in boreal forest were quantified and identified by DNA analysis. The numbers of bacterial and archaeal 16S rRNA gene copies were highest in uncolonized humus and lowest in fruiting bodies. The numbers of bacterial 16S rRNA gene copies varied from 1.3 x 10(7) to 3.1 x 10(9) copies g(-1) fw and archaeal copies from 4.1 x 10(7) to 9.6 x 10(8) copies g(-1) fw. The relatively high number of archaeal 16S rRNA gene copies was likely due to the cold and highly organic habitat. The presence of hyphae appeared to further promote archaeal numbers and the archaea:bacteria ratio was over one in samples containing only fungal material. Most detected archaea belonged to terrestrial Thaumarchaeota. Proteobacteria, Actinobacteria and Acidobacteria were predictably the dominating bacterial taxa in the samples with clear trend of Betaproteobacteria preferring the pine root habitats.Peer reviewe
Sienten elämästä on paljon kerrottavaa
No full textSari Timonen ja Jari Valkonen(toim.): Sienten biologia.
Gaudeamus 2013
Sienten kiehtovaa biologiaa yleistajuisesti – ja suomen kielellä
No full textKirja-arvosteluKirja: Sari Timonen & Jari Valkonen (toim.). 2013. Sienten biologia. Gaudeamus. 448
Ants reign over a distinct microbiome in forest soil
No full textBiotic and abiotic characteristics shape the microbial communities in the soil environment. Manipulation of soil, performed by ants when constructing their nests, radically changes the soil characteristics and creates a unique environment, which differs in its composition, frequency and abundance of microbial taxa, from those in the reference soils. We sampled nests of the mound-building ant Formica exsecta, and the surrounding reference soils over a three-month period, and generated NGS (Illumina MiSeq), and T-RFLP data of the bacterial and fungal communities. We used ordination techniques and network analysis to disclose the community structure, and we assessed the variation in diversity, evenness and enrichment of taxa between the two environments. We also used indicator analysis to identify the potential core microbiome of the nests. Our results show that the bacterial and fungal communities, in the rigorously curated nest environment, are significantly different from those in the reference soils, in terms of community structure and enrichment of characteristic indicator taxa. We demonstrate that the nests represent a niche, where microbial species can adapt and diverge from the communities in the surrounding soils. Our findings contribute to our understanding of the composition and function of microbiomes in fragmented habitats.Peer reviewe
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