1 research outputs found
The evolving SARS-CoV-2 epidemic in Africa: insights from rapidly expanding genomic surveillance
- Author
- Nyaga Martin M.
- Akpede George O
- Thilliez Gaetan
- Sitharam Nikita
- Ndjolo Alexis
- Kingsley Robert
- Abid Nabil
- Bhiman Jinal N
- Wiley Michael
- Mine Madisa
- Kayed Ahmed
- Velavan Thirumalaisamy P.
- Ayei James
- Phan My VT
- Alaruusi A.
- Rafaï Clotaire
- Desta Adey Feleke
- Ben Kahla Alia
- Mbunsu Gabriel K.
- Akoua-Koffi Chantal G.
- Ahmed El Bara
- Maponga Tongai G.
- Omuoyo Donwilliams O.
- Akano Kazeem
- Budiaki Sylvie
- Salako Babatunde L.
- Oluwapelumi Adeyemi O
- Carvalho Kevin S
- Adewumi Olubusuyi
- Mbulawa Mphaphi B
- Siliadin Akoele
- Iranzadeh Arash
- Goba Augustine
- Ahmed Shymaa
- Ouma Ahmed
- Albéric Adje Kadjo Herve
- Okokhere Peter
- Odia Ikponmwosa
- Rafaï Clotaire D
- Choga Wonderful T.
- Ajili F.
- Mburu Maureen
- Tumedi Kefentse A
- Abuzaid Nadir
- Mbulawa Mphaphi B.
- Mba Nwando
- Nkengasong John
- Abias Abe G.
- Olubayo Luicer
- Salama Abdullah
- Neto Rodrigues Rosa Maria D. E. S. A.
- Xavier Joicymara
- Ayivor-Djanie Reuben
- Mpina Maximillian
- Kaleebu Pontiano
- Salako Babatunde
- Oguzie Judith U.
- Tayachew Adamu
- van Wyk Stephanie
- O'Grady Justin
- Kingsley Ojide
- Morang'a Collins M
- Mabunda Nédio
- Sylvanus Okogbenin
- Hosch Salome
- Ragomzingba Frank EZ
- Oluniyi Paul E
- Sisay Abay
- Sow Abdourahmane
- Ojok Lul Deng
- Hachid Aissam
- Ouedraogo Abdoul-Salam
- Johnson Adeniji A.
- Marycelin Baba
- Taha Ahmed
- Ajogbasile Fehintola V.
- Aryeetey Sherihane
- Allam Mushal
- Uwanibe Jessica N
- Page Andrew J
- Naguib Amel
- Africa Pathogen Genomics Initiative (Africa PGI)‡
- Doumbia Seydou
- Schaffner Stephen F.
- Ajogbasile Fehintola V
- Happi Anise N
- Faouzi Abdellah
- Wiley Michael R
- Smeti Ibtihel
- Ondoa Pascale
- Neto Rodrigues Rosa Maria DESA
- de Laurent Zaydah R
- Damaris Matoke-Muhia
- Mburu Maureen W.
- Essomba René
- Herring Belinda L
- Mogga Juma
- Candé Adul
- Moeti Matshidiso
- Andeko Julia
- Debela Alemu Tike
- Ahmed Elhadi A.
- Oludayo Ope-Ewe
- Fakayode Oluwatosin
- Femi Oladiji
- Duedu Kwabena O.
- Khaireh Bouh Abdi
- Carvalho Kevin S.
- Nyaga Martin M
- Deng Lul Lojok
- Joseph Rageema
- Baker David
- Matobo Mooko Marethabile
- Mpina Maximillian G.
- Trotter Alexander
- Barasa Edwine
- Kingsley Robert A
- Morang'a Collins M.
- Iguosadolo Nosamiefan
- Mohamed Sahra Isse
- Tesfaye Abraham
- Mendes Adriano
- Femi Ayoade
- Bester Phillip A
- Keita Alpha
- Maharaj Arisha
- Roshdy Wael H.
- Manuel Eusebio
- Karim Wasim Abdul
- Abworo Edward O
- Treurnicht Florette
- Nakaseegu Joweira
- Fowotade Adeola
- Morais Joana
- Akpede George O.
- Tshiabuila Derek
- Agoti Charles
- Andriamandimby Soa Fy
- Gad Ahmed
- Pool Brigitte
- Abias Abe G
- Seadawy Mohamed G.
- Taweh Fahn M.
- Ogah Onwe E
- Odoom John
- Choga Wonderful T
- Adjiratou Aissatou B.
- Onwuamah Chika
- Lagare Adamou
- Konstantinus Iyaloo S.
- Abdelhamid W.
- Amuzu Dominic
- Alaoui Afaf
- Nabisubi Patricia
- Sivro Aida
- Mohammad Iluoreh Ahmed
- Matsheka Maitshwarelo
- Ngoi Joyce M.
- Greninger Alexander
- Sandi John D
- Lutwama Julius J.
- Rujeni Nadine
- Khalifa Mohamed K
- Kpeli Grace S
- Musonda Kunda G.
- Lutwama Julius J
- Tessema Sofonias K
- Tegomoh Bryan
- Kavunga-Membo Hugo
- Balde Aladje
- Wanjohi Dorcas W.
- Velavan Thirumalaisamy P
- Bolajoko Bankole
- van Zyl Gert U
- Elzagheid Adam I.
- Karray Hela
- Lekana-Douki Sonia
- Chabuka Lucious
- Top Ndeye Marieme
- Page Andrew J.
- Bellefquih Abdelkrim Meziane
- Kandeil Ahmed
- Ndodo Nnaemeka
- Francisco Ngiambudulu M.
- Pedro Afonso
- Ngoi Joyce M
- Ampofo William K
- George Uwem E
- Kepler Lenora M
- Faye Ousmane
- Matsheka Maitshwarelo I.
- Abu Bright
- Musa Abdualmoniem O.
- Shabaan Abd Elazeez
- Elhamoumi Siham
- Rizzo Alberto
- Adeyemi Kayode T.
- Ahmed Elhadi
- Amoako Daniel
- Ranaivoson Hafaliana C
- Negash Abel Abera
- Francisco Ngiambudulu
- Odoom John K.
- de Laurent Zaydah R.
- Masmoudi Saber
- Huddleston John
- Kone Amadou
- Giandhari Jennifer
- Awandare Gordon
- Matsouri Maha
- Philomena Eromon
- Prosolek Sophie
- George Uwem E.
- Ben Boubaker Ilhem Boutiba
- Kepler Lenora
- Batchi-Bouyou Armel L
- Soumah Abdoul Karim
- Nkurunziza Jerome
- de Oliveira Tulio
- Ihekweazu Chikwe
- Paye Marietou F
- Andeko Julia C.
- Mhalla Salma
- Pratt Catherine
- Ismail Arshad
- Alemam Adba Alfatih
- Agoti Charles N
- Adetifa Ifedayo
- Phan My V. T.
- Njanpop-Lafourcade Berthe-Marie
- Christoffels Alan
- Schindler Tobias
- Mareka Mathabo
- Nduwimana Cassien
- Salako Babatunde L
- Bester Phillip
- Wamala Joseph
- Xavier Joicymara S.
- Shumba Edwin
- Sangaré Abdoul Karim
- Baxter Cheryl
- San James E.
- Lokilo Emmanuel
- Herring Belinda
- Gumbo Hlanai
- Schaffner Stephen F
- Naidoo Yeshnee
- Ngabana Edith N
- Onwuamah Chika K
- Ouangraoua Soumeya
- Mwenda Mulenga
- Johnson Adeniji A
- Carvalho Kevin
- Tamfum Jean-Jacques
- Mwangi Sarah Wambui
- Amuzu Dominic SY
- Otieno Edward
- Oyola Samuel O
- Vinze Anika
- Egli Adrian
- Keita Alpha K
- Ondo'o Ayekaba Mitoha
- Amoako Daniel G.
- Diagne Moussa M.
- Mbala Placide K.
- Mapanguy Chastel M
- Anyaneji Ugochukwu
- Oderinde Bamidele S.
- Kay Gemma L
- Githinji George
- Sabeti Pardis C.
- Gorman Richmond
- Anoh Etilé
- Mbunsu Gabriel
- Scheepers Cathrine
- Mbanne Maimouna
- Dratibi Fred A.
- Okolie Johnson C
- Ouma Ahmed E. O.
- Ong'era Edidah M
- Anyaneji Ugochukwu J.
- Sandi John D.
- Hawi Adede
- Goedhals Dominique
- Goredema Alexander
- Velavan Thirumalaisamy
- Shama Abo
- Agoti Charles N.
- Agweyu Ambrose
- Razanajatovo Norosoa H
- Schubert Grit
- ElHefnawi Mahmoud
- Morobe John
- Lambisia Arnold W.
- Ramphal Upasana
- Wamala Joseph F.
- Omuoyo Donwilliams
- Ajogbasile F.V.
- Page Andrew
- Akpede George
- Essomba René G.
- Taweh Fahn M
- Musonda Kunda G
- Mbala Placide K
- Budiaki Sylvie L
- Rasmussen David
- Ahmed O.
- Behillil Sylvie
- Omuoyo Donwilliams O
- Tamfum Jean-Jacques M
- Kingsley Ojide C
- Muyembe Francisca
- Elzagheid Adam I
- Anang Abraham Kwabena
- Bensalem Aicha
- Ramphal Yajna
- Francisco Ngiambudulu M
- Malaka Christian N.
- Shibemba Aaron
- Testimony Olumade
- Lutucuta Silvia
- Olawoye Idowu
- Biscornet Leon
- Agbodzi B.
- Muhammad Iluoreh Ahmed
- Trotter Alexander J.
- Lima Mendonça Maria da Luz
- Lojuan Abe
- de Oliveira Martins Leonardo
- Gaseitsiwe Simani
- Nyandwi Joseph
- Oguzie Judith
- Olawoye Idowu B.
- Gyapong John
- Wilkinson Eduan
- Ayekaba Mitoha Ondo'o
- Ahmed M.
- Adegnika Akim
- Oguntope Sobajo
- Dellagi Koussay
- Njouom Richard
- Ochola-Oyier Lynette I
- Rudder Steven
- Brook Cara
- van Zyl Gert U.
- Lule Daniel
- Amuri Adrienne A
- Silochi Nelson Boricó
- Mbunsu Gabriel K
- Gargouri Saba
- Ahmed Shymaa S.
- Oderinde Bamidele S
- Kane Mouhamed
- van der Werf Sylvie
- Elzagheid Adem I.
- Ajayi Nnennaya
- Nokes David J
- Moir Monika
- Adel Abd Monaem
- Boubaker Ilhem Boubita Ben
- Sadji Adodo
- Maphalala Gugu P
- Natasha Akwii Patience
- Matsheka Maitshwarelo I
- Schaffner Stephen
- Hilali Abderraouf
- Oluwapelumi Adeyemi O. O.
- Onwuamah Chika K.
- Diagne Moussa M
- Dratibi Fred
- Adewumi Olubusuyi M.
- Butera Yvan
- Malaka Christian N
- Mogga Juma J. H.
- Enouf Vincent
- Mayor Alfredo
- Mohammed Khadija Said
- Khalifa Mohamed
- Dia Ndongo
- Gumede Nicksy
- Wamala Joseph F
- Shaffer Jeffrey G
- Musa Abdualmoniem
- Abouelnaga S.
- Kanyerezi Stephen
- Kay Gemma
- Padane Abdou
- Tomori Oyewale
- Kouriba Bourema
- Femi Saibu
- Diarra Bassirou
- Oluniyi Paul E.
- Abdissa Alemseged
- Belarbi Essia
- Sandi John
- Lekana-Douki Bernard
- Kingsley Robert A.
- Nokes D. James
- Sabeti Pardis
- Bedford Trevor
- Carr Rosina A. A.
- Muyembe Francisca M
- Mburu Maureen W
- Adetifa Ifedayo M.O.
- Dellagi Koussa
- Ssemwanga Deogratius
- Ngabana Edith N.
- Oluwapelumi Adeyemi
- Paye Marietou F.
- Grayo Solène
- Omunakwe Hannah
- Zekri Abdel-Rahman N.
- Ali M.A.
- Tatfeng Mirabeau Y
- Grad Alia
- Mohammed Khdija Said
- van Zyl Gert
- Halatoko Jacqueline Wemboo Afiwa
- Abid N.
- Rafaï Clotaire D.
- Bejon Philip
- Elguindy Nancy
- Beloufa Mohamed Amine
- Chouhikha Arisha
- Oyola Samuel
- Essomba René G
- Lutwama Julius
- Kadjo Herve Albéric Adje
- Ochola-Oyier Lynette I.
- Audu Rosemary A.
- Makangara Jean-Claude C
- Tumedi Kefentse
- Sangare Abdoul K
- Phillips Richard O
- Djimde Abdoulaye
- Yasuda Jiro
- Abosede O.
- Gyamfi Jones
- Makiala-Mandanda Sheila
- Mvula Bernard
- Ampofo William K.
- Traoré Adjaratou
- Adeyemi Kayode T
- Bashein Abdulla
- Okolie Johnson C.
- Tebeje Yenew
- Mancon Alessandro
- El-Shesheny Rabeh
- Roshdy Wael
- Ogah Onwe
- Faye Martin
- Nabadda Susan
- Khalifa Mohamed K.
- Kanteh Abdoulie
- Ali Abraham
- Mathieu Hota
- Yadouleton Anges
- Saasa Ngonda
- Abdelmoula Fatma
- Gutierrez Ana
- Ong’era Edidah M.
- Siddle Katherine J.
- Abworo Edward
- Gyapong John O.
- Kebabonye Malebogo
- Phillips Richard O.
- Akoua-Koffi Chantal
- Victoir Kathleen
- Lusamaki Eddy
- Keita Alpha K.
- Nei-Yuan Hsiao
- Amuzu Dominic S. Y.
- Sylverken Augustina A.
- Rasmussen David A.
- Ngabana Edith
- Ouma Ahmed EO
- Tatfeng Mirabeau
- Kayiwa John
- Andeko Kayode T.
- Adeyemi Kayode
- Owusu Michael
- Nokes David
- Makangara Jean-Claude
- Adu Bright
- Mboowa Gerald
- Adewumi Olubusuyi M
- Okolie Johnson
- Arnaldo Paulo
- Ogunsanya Olusola A
- Erameh Cyril
- Kazeem Akano
- Gorova Vivianne
- Morang’a Collins
- Mapanguy Chastel M.
- Lissom Abel
- Sanaa-Amine Alaoui
- Sangare Abdoul K.
- Ramuth Magalutcheemee
- Niyomwungere Alexis
- Tsofa Benjamin
- Marcello Alessandro
- Malaka Christian
- Reggad Ahmed
- Ntoumi Francine
- Tyers Lynn
- Adetifa Ifedayo M. O.
- Mihret Adane
- Kpeli Grace S.
- Sabeti Pardis C
- Bouzid Amal
- Ayouba Ahidjo
- Semanda Patrick
- Siddle Katherine J
- Batchi-Bouyou Armel L.
- Carr Rosina
- Bonney Joseph H. K.
- Wanjohi Dorcas W
- Ssewanyana Isaac
- Siddle Katherine
- Abdo I.
- George Uwem
- Elzagheid Adam
- Bediako Yaw
- Maponga Tongai G
- Anyaneji Ugochukwu J
- Xavier Joicymara S
- Bayih Abebe Genetu
- Nyunja Albert
- Muyembe Francisca M.
- Preiser Wolfgang
- Abera Adugna
- Seadawy Mohamed G
- Ogunsanya Olusola A.
- Konstantinus Iyaloo S
- Sankhe Safietou
- Everatt Josie
- Ghassan Adib
- Maphalala Gugu
- Lekana-Douk Sonia
- Lemtudo Alan
- Gyapong John O
- Makangara Jean-Claude C.
- Nyaga Martin
- Seadawy Mohamed
- Momoh Mambu
- Leendertz Fabian
- Duedu Kwabena O
- Souissi Amal
- Yasudo Jiro
- Oluwapelumi Adeyemi O.
- Diop Mamadou
- Bridges Daniel J.
- Pratt Catherine B
- Kepler Lenora M.
- Bridges Daniel
- Lambisia Arnold
- Triki Henda
- Okokhere Peter O
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- Odoom John K
- Lusamaki Eddy K.
- Hsiao Nei-yuan
- Ahmed Side Mohamed
- Amoako Daniel G
- McInnis Bronwyn
- Wiley Michael R.
- Takawira Faustinos T
- Chinedu Ugwu
- Ayekaba Mitoha Ondo’o
- Bhiman Jinal N.
- Diagne Moussa
- Kiconco Jocelyn
- Tatfeng Mirabeau Y.
- Essabbar Abdelomunim
- Musa Abdualmoniem O
- Lambisia Arnold W
- Takawira Faustinos
- Sesay Abdul K
- Ranaivoson Hafaliana
- Aziz Ramy Karam
- Williamson Carolyn
- Ageez A.M.
- Martin Darren P.
- Laraqui Abdelilah
- Pillay Sureshnee
- Ranaivoson Hafaliana C.
- Ouro-Medeli Alassane
- Phillips Richard
- Gueye Abdou Salam
- Tebeje Yenew K
- Happi Christian
- Ajayi Nnennaya A
- Omunakwe Hannah E.
- Abdelmoulah F.
- Omoruyi Chukwuma E
- Sesay Abdul
- Kemi Adedotun-Sulaiman
- Wurie Isatta
- Marondera Blessing T
- Bridges Daniel J
- Shaffer Jeffrey G.
- Sall Amadou
- Nkeshimana Anatole
- Audu Rosemary
- Johnson Adeniji
- Carr Rosina AA
- Roshdy Wael H
- Kayiwa John T
- Mashe Tapfumanei
- Toure Abdoulaye
- Laatiris Abdelkader
- Combe Patrice
- Omunakwe Hannah E
- Rebai Ahmed
- Andeko Julia C
- Sall Amadou A.
- Herring Belinda L.
- Onywera Harris
- Mogga Juma JH
- Nakaseegu Joweria
- Shoka Abd Moniem Ain
- Oyola Samuel O.
- de Laurent Zaydah
- Tessema Sofonias
- Ragomzingba Frank
- Simulundu Edgar
- Wolter Nicole
- Le-Viet Thanh
- Murunga Nickson
- Maponga Tongai
- Musyoki Jennifer
- Bimouhen Abderrahmane
- Morobe John M.
- Dussart Philippe
- Agnes Juru
- Abias Abe
- Mbala Placide
- Abechi Priscilla
- Park Danny
- Mastouri Maha
- Alarif Ahlam
- Rasmussen David A
- Tamfum Jean-Jacques M.
- Sall Amadou A
- Batchi-Bouyou Amel L.
- Bester Phillip A.
- Loucoubar Cheikh
- Tordo Noël
- Dratibi Fred A
- Ogunsanya Olusola
- San James E
- Martin Darren P
- Tegally Houriiyah
- Zekri Abdel-Rahman
- Moyo Sikhulile
- Fakhfakh Ahmed
- Uwanibe Jessica N.
- Sayed Ahmed
- Nokes David J.
- Quashie Peter Kojo
- San James
- Okokhere Peter O.
- Mpina Maximillian G
- Tessema Sofonias K.
- Konou Abla
- Pratt Catherine B.
- Musonda Kunda
- Morang’a Collins M.
- Neto Rodrigues Rosa Maria D.E.S.A.
- Diallo Amadou
- Grace Chukwa
- Ahmed Muhammad I.
- Anas Abbad
- Ahmed Elhadi A
- Singh Lavanya
- Phan My V.T.
- Elgahzaly Hesham
- Mukantwari Enatha
- Wanjohi Dorcas
- Mapanguy Chastel
- Bootsma Sacha
- Sylverken Augustina
- Marondera Blessing
- Salou Mounerou
- Trotter Alexander J
- Smith-Lawrence Pamela
- Bhiman Jinal
- Bbosa Nicholas
- Mostafa Ahmed
- Sonoo Janaki
- Morobe John M
- Jalloh Simbirie
- Fadeyi Abayomi
- Zekri Abdel-Rahman N
- El-Taweel Ahmed
- Ahmed Shymaa S
- Ahuka-Mundeke Steve
- Ochola-Oyier Lynette
- Ragomzingba Frank E.Z.
- Chukwa Grace C.
- Tumedi Kefentse A.
- Abouelhoda Mohamed
- O’Grady Justin
- Metha Samar
- Olawoye Idowu B
- Kayiwa John T.
- Ragomzingba Frank E. Z.
- Mohale Thabo
- Abar Aden Elmi
- Abe Haruka
- Lule Daniel B
- Batchi-Bouyou Armel
- Ajayi Nnennaya A.
- Anoh Etilé A
- Oderinde Bamidele
- Chouikha Anissa
- Fki-Berrajah Lamia
- Grant Donald S.
- Ahmed Yahaya Ali
- von Gottberg Anne
- Nene Vishvanath
- Elsayed Ahmed
- Bonney Joseph HK
- Mari Alfredo
- Choga Wonderful
- Bonney Joseph H.K.
- Maruapula Dorcas
- Amuri Adrienne
- Iyanu Fred-Akintunwa
- Simon-Loriere Etienne
- Ajogbasile Fehintola
- Shaffer Jeffrey
- Happi Anise
- Vida Ahyong
- Razanajatovo Norosoa H.
- Anscombe Catherine
- Akoua-Koffi Chantal G
- Adetifa Ifedayo MO
- Kay Gemma L.
- Venter Marietjie
- Grant Donald
- Bonney Joseph
- Gutierrez Ana V
- Peyrefitte Christophe
- Ogah Onwe E.
- Taweh Fahn
- Campbell Allan
- Mukadi-Bamuleka Daniel
- Adesegun A.
- Sylverken Augustina A
- Kassim Samar Kamal
- Lusamaki Eddy K
- Khan Adam
- Phan My
- Marondera Blessing T.
- Agwa Sara Hassan
- Razanajatovo Norosoa
- Trabelsi Sameh
- Happi Anise N.
- Zumla Ali
- Nansumba Hellen
- Paye Marietou
- Ong’era Edidah
- Kpeli Grace
- Mbulawa Mphaphi
- Lule Daniel B.
- Sijuwola Ayotunde E.
- Mbhele Nokuzola
- Gutierrez Ana V.
- Sangare Abdoul
- Amuri Adrienne A.
- Ampofo William
- Ismael Nalia
- Martin Darren
- Derrar Fawzi
- Uwanibe Jessica
- Onikepe Folarin
- Takawira Faustinos T.
- Konstantinus Iyaloo
- Sijuwola Ayotunde
- Budiaki Sylvie L.
- Oguzie Judith U
- Cotten Matthew
- Sesay Abdul K.
- Lessells Richard
- Obong Abasi Ene
- Heraud Jean-Michel
- Oluniyi Paul
- Abworo Edward O.
- Maphalala Gugu P.
- Kingsley Ojide C.
- Omoruyi Chukwuma E.
- Namulondo Joyce
- Tebeje Yenew K.
- Duedu Kwabena
- Grant Donald S
- Awandare Gordon A.
- Audu Rosemary A
- Juru Agnes
- Anoh Etilé A.
- Ngoi Joyce
- Wasfi Fares
- Sijuwola Ayotunde E
- Awandare Gordon A
- Publication venue
- Publication date
- 15/09/2022
- Field of study
No full textInvestment in SARS-CoV-2 sequencing in Africa over the past year has led to a major increase in the number of sequences generated, now exceeding 100,000 genomes, used to track the pandemic on the continent. Our results show an increase in the number of African countries able to sequence domestically, and highlight that local sequencing enables faster turnaround time and more regular routine surveillance. Despite limitations of low testing proportions, findings from this genomic surveillance study underscore the heterogeneous nature of the pandemic and shed light on the distinct dispersal dynamics of Variants of Concern, particularly Alpha, Beta, Delta, and Omicron, on the continent. Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve, while the continent faces many emerging and re-emerging infectious disease threats. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century
