1,721,070 research outputs found
Molecular Balances as Physical Organic Chemistry Tools to Quantify Non‐Covalent Interactions
No full textNon-covalent interactions are present in numerous synthetic and biological systems, playing an essential role in vital life processes, such as the stabilization of proteins’ structures or reversible binding in substrate-receptor complexes. Their study is relevant but faces challenges due to its inherent weak nature. In this context, molecular balances (MBs) are one of the most efficient physical organic chemistry tools to quantify non-covalent interactions, bringing beneficial knowledge regarding their nature and strength. Herein, we report an overview and critical discussion of recent studies related to various MBs in the quantification of a collection of non-covalent interactions, covering from the well-known aryl • • • aryl and CH • • • aryl interaction to the newest fullerene • • • aryl and chalcogen • • • chalcogen interactions
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
Unexpected emission properties of a 1,8-naphthalimide unit covalently appended to a Zn-salophen
No full textWe report the synthesis, characterization, and binding properties of a Zn-salophen complex, 1a, functionalized with a 1,8-naphthalimide unit. Unexpectedly, the emission spectrum of 1a shows a remarkable quenching of the band assigned to the naphthalimide unit. To better understand this phenomenon, a supramolecular model system constituted by a symmetric Zn-salophen and a pyridyl derivative of 1,8-naphthalimide, 1b·2a, was investigated. We propose the existence of a photoinduced energy transfer process between the naphthalimide (donor) and the salophen (acceptor) units in 1b·2a. A similar process must be operative in the covalent receptor 1a. Nevertheless, the results deriving from steady-state fluorescence experiments do not rule out the occurrence of a photoinduced electron transfer process as alternative pathway for the quenching. We also describe the chemosensing properties of receptor 1a and the supramolecular system 1b·2a towards acetate. The nonsymmetrically substituted salophen receptor 1a only transduces the binding of the anion to the Zn metal center in significant spectroscopic changes in its absorption spectrum. On the other hand, we exploit the strong emission quenching experienced by the naphthalimide component in the supramolecular complex 1b·2a to detect anions (e.g. acetate) by means of a typical "turn-on" fluorescent indicator displacement assay
Binding of Acetylated Lysine by Using a Water Soluble Aryl Extended Calix[4]pyrrole
No full text: Post-translational modifications of lysine in histones, as methylation and acetylation, have well established functions in epigenetics and are emerging as important actors in broader biological regulation. Currently, the detection of acetylated lysine (Kac) in water solution as free amino acid or protein residue remains challenging. Acetylated lysine is a neutral amino acid, and the lack of ion-dipole interactions causes the decrease in binding affinity displayed by synthetic molecular receptors with respect to the other lysine modifications. Here, we report molecular modeling calculations and 1 H NMR experiments to investigate the binding properties of two different calix[4]pyrrole receptors towards Kac. Computational analyses reveal that tetra-aryl-extended calix[4]pyrrole (1) preferentially binds the cis-Kac conformer over the trans one due to steric considerations and more favorable interactions. Experimental 1 H NMR titration experiments confirm the formation of a 1 : 1 complex between receptor 1 and cis-Kac, with a Ka exceeding 103 M-1 . Conversely, the super-aryl-extended calix[4]pyrrole 2 is less efficient in binding Kac, due to unfavorable solvation/desolvation effects, as proven by 1 H NMR experiments. Moreover, receptor 1 showed a higher affinity for Kac over other lysine modifications, such as methylated lysines
Molecular Motion and Conformational Interconversion of Ir(I)·COD Included in Rebek's Self-Folding Octaamide Cavitand
No full textWe report experimental and theoretical evidence of restrained axial rotation for heteroleptic L-2 center dot Ir-I center dot 1,5-cyclooctadiene (COD) complexes included in the aromatic cavity of Rebek's self-folding octaamide cavitand. At 298 K, the axial spinning motion of the included organometallic guests was slow on the (HNMR)-H-1 time scale and produced a proton spectrum for the bound host indicative of C-2 symmetry. Signals corresponding to aromatic protons of the bound host coalesced at 323 K, indicating that the spinning process of the included guest became fast on the H-1 NMR time scale and that the complex approached C-4 symmetry. Surprisingly, lowering the temperature of the solution to 193 K induced an additional splitting of the proton signals observed at room temperature for both the bound host and the included guest. We propose the emergence of a new element of chirality in the complexes, which was associated with a slow interconversion, on the (HNMR)-H-1 time scale between the two chiral twisted-boat conformers of the chelated COD included in the already chiral cavity of the container. This leads to the inclusion complexes existing in solution as pairs of two racemic diastereomers. We estimated that the racemization barrier for the two cyclochiral conformers of the Ir-I chelated COD was 5 kcal mol(-1) higher as an included organometallic complex than as free in solution. Furthermore, we performed a van't Hoff plot and determined that the inclusion of the organometallic complex in the cavitand was endothermic and exclusively driven by entropy (Delta H = 5.9 kcal mol(-1) and Delta S = 33.9 cal mol(-1) K-1)
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