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RibBX of Bradyrhizobium ORS285 plays an important role in intracellular persistence in various Aeschynomene host plants
No full textBradyrhizobium ORS285 forms a nitrogen-fixating symbiosis with both Nod factor (NF)-dependent and NF-independent Aeschynomene spp. The Bradyrhizobium ORS285 ribBA gene encodes for a putative bifunctional enzyme with 3,4-dihydroxybutanone phosphate (3,4-DHBP) synthase and guanosine triphosphate (GTP) cyclohydrolase II activities, catalyzing the initial steps in the riboflavin biosynthesis pathway. In this study, we show that inactivating the ribBA gene does not cause riboflavin auxotrophy under free-living conditions and that, as shown for RibBAs from other bacteria, the GTP cyclohydrolase II domain has no enzymatic activity. For this reason, we have renamed the annotated ribBA as ribBX. Because we were unable to identify other ribBA or ribA and ribB homologs in the genome of Bradyrhizobium ORS285, we hypothesize that the ORS285 strain can use unconventional enzymes or an alternative pathway for the initial steps of riboflavin biosynthesis. Inactivating ribBX has a drastic impact on the interaction of Bradyrhizobium ORS285 with many of the tested Aeschynomene spp. In these Aeschynomene spp., the ORS285 ribBX mutant is able to infect the plant host cells but the intracellular infection is not maintained and the nodules senesce early. This phenotype can be complemented by reintroduction of the 3,4-DHBP synthase domain alone. Our results indicate that, in Bradyrhizobium ORS285, the RibBX protein is not essential for riboflavin biosynthesis under free-living conditions and we hypothesize that its activity is needed to sustain riboflavin biosynthesis under certain symbiotic conditions
Zooplankton abundance and community structure driven by tidal currents in a Mediterranean coastal lagoon (Boughrara, Tunisia, SW Mediterranean Sea)
No full textLagoons and coastal marine zones are very productive and useful ecosystems, but they are threatened by the effects of global change and anthropogenic pressures. These effects have a negative impact on the zooplankton, weakening its function of phytoplankton consumer, leading to uncontrolled proliferation of microalgae in case of eutrophication. In this study we test the hypothesis that tidal exchanges with the sea can counteract these deleterious effect, by renewing the zooplankton community and by enhancing its top-down control of phytoplankton through selective retention of zooplankton grazers. Our study focused on the southern region of the Gulf of Gabes and the Boughrara lagoon which presents the highest tidal range in the Mediterranean. During two field campaigns (October 2016 and April 2017) we have analyzed zooplankton descriptive (taxonomic composition, abundance; biomass) and functional (ingestion rate, grazing pressure) variables and environmental variables during time series at a fixed station during ebb-flood sequences and at 8 stations along a sea-lagoon transect and during different tidal amplitude periods. Multivariate analyses of both environmental parameters and zooplankton taxa showed the existence of three distinct zones along the sea-lagoon transect, but also the influence of tidal circulation and water mixing on the renewal of the zooplankton community up to the innermost zones of the lagoon. Time series gave clear patterns for the input/output of marine/lagoon species and show a net import for different taxa and for the total zooplankton abundance and biomass (mean flood/ebb ratio = 2.2 for the total abundance and 2.4 for the biomass), leading to differential retention of zooplankton in the lagoon and to an increase in the potential grazing pressure on phytoplankton (mean flood/ebb ratio = 2.8). We also estimated that the grazing pressure in the lagoon was twice higher during the periods of high tidal amplitudes (at or close to spring tide) compared to periods with low amplitude (neap tides), clearly showing that the retention of zooplankton significantly increases the grazing impact on phytoplankton. These results highlight the importance of the tidal forcing for maintaining the good status of the zooplankton structure and function in strongly anthropized coastal and lagoon ecosystems
Greater mitochondrial energy production provides resistance to ocean acidification in "winning" hermatypic corals
No full textCoral communities around the world are projected to be negatively affected by ocean acidification. Not all coral species will respond in the same manner to rising CO2 levels. Evidence from naturally acidified areas such as CO2 seeps have shown that although a few species are resistant to elevated CO2, most lack sufficient resistance resulting in their decline. This has led to the simple grouping of coral species into "winners" and "losers," but the physiological traits supporting this ecological assessment are yet to be fully understood. Here using CO2 seeps, in two biogeographically distinct regions, we investigated whether physiological traits related to energy production [mitochondrial electron transport systems (ETSAs) activities] and biomass (protein contents) differed between winning and losing species in order to identify possible physiological traits of resistance to ocean acidification and whether they can be acquired during shortterm transplantations. We show that winning species had a lower biomass (protein contents per coral surface area) resulting in a higher potential for energy production (biomass specific ETSA: ETSA per protein contents) compared to losing species. We hypothesize that winning species inherently allocate more energy toward inorganic growth (calcification) compared to somatic (tissue) growth. In contrast, we found that losing species that show a higher biomass under reference pCO(2) experienced a loss in biomass and variable response in area-specific ETSA that did not translate in an increase in biomass-specific ETSA following either short-term (4-5 months) or even lifelong acclimation to elevated pCO(2) conditions. Our results suggest that resistance to ocean acidification in corals may not be acquired within a single generation or through the selection of physiologically resistant individuals. This reinforces current evidence suggesting that ocean acidification will reshape coral communities around the world, selecting species that have an inherent resistance to elevated pCO(2)
Role of reptiles and associated arthropods in the epidemiology of rickettsioses : a one health paradigm
No full textAuthor summary Zoonotic pathogens such as Rickettsia spp., Coxiella burnetii and Anaplasma phagocytophilum are associated with ticks, lice, fleas and mites and may infect a wide range of vertebrate species. There are still many knowledge gaps concerning the arthropod vectors and amplifying hosts of these pathogens. Reptiles are known to host infected ticks with these zoonotic pathogens and eventually become infected themselves by these bacteria. Hence to address this question from a broad One-Health perspective, we assessed the molecular prevalence of Rickettsia spp., C. burnetii and A. phagocytophilum in reptiles, ticks and mites from both hosts and environment and seroprevalence in humans living or working near the same area. Rickettsia DNA was detected in lizards' tails, Ixodes ricinus ticks and in Neotrombicula autumnalis mites collected from them and in questing ticks. Although DNA of C. burnetii and A. phagocytophilum was not detected in lizards and their ectoparasites, sera samples of human subjects tested positive for the antibodies against these zoonotic pathogens. These findings indicate the epidemiological role of lizards in spreading SFG rickettsiae as well as I. ricinus, and hence representing a potential public health concern in geographical areas where lizards, ticks and humans share the same environment. We assessed the presence of Rickettsia spp., Coxiella burnetii and Anaplasma phagocytophilum in reptiles, their ectoparasites and in questing ticks collected in a nature preserve park in southern Italy, as well as in a peri-urban area in another region. We also investigated the exposure to these pathogens in forestry workers, farmers and livestock breeders living or working in the nature preserve park given the report of anecdotal cases of spotted fever rickettsioses. Rickettsia spp. were molecularly detected in Podarcis muralis and Podarcis siculus lizards (i.e., 3.1%), in Ixodes ricinus (up to 87.5%) and in Neotrombicula autumnalis (up to 8.3%) collected from them as well as in I. ricinus collected from the environment (up to 28.4%). Rickettsia monacensis was the most prevalent species followed by Rickettsia helvetica. An undescribed member of the family Anaplasmataceae was detected in 2.4% and 0.8% of the reptiles and ectoparasites, respectively. Sera from human subjects (n = 50) were serologically screened and antibodies to Rickettsia spp. (n = 4; 8%), C. burnetti (n = 8; 16%) and A. phagocytophilum (n = 11; 22%) were detected. Two ticks collected from two forestry workers were positive for spotted fever group (SFG) rickettsiae. Ixodes ricinus is involved in the transmission of SFG rickettsiae (R. monacensis and R. helvetica) in southern Europe and lizards could play a role in the sylvatic cycle of R. monacensis, as amplifying hosts. Meanwhile, N. autumnalis could be involved in the enzootic cycle of some SFG rickettsiae among these animals. People living or working in the southern Italian nature preserve park investigated are exposed to SFG rickettsiae, C. burnetii and A. phagocytophilum
Spatiotemporal dynamics of suspended sediments in the Negro River, Amazon Basin, from in situ and Sentinel-2 remote sensing data
No full textMonitoring suspended sediments through remote sensing data in black-water rivers is a challenge. Herein, remote sensing reflectance (R-rs) from in situ measurements and Sentinel-2 Multi-Spectral Instrument (MSI) images were used to estimate the suspended sediment concentration (SSC) in the largest black-water river of the Amazon basin. The Negro River exhibits extremely low R-rs values ( 7 m(-1)) caused by the high amount of dissolved organic carbon (DOC > 7 mg L-1) and low SSC (<5 mg L-1). Interannual variability of R-rs is primarily controlled by the input of suspended sediments from the Branco River, which is a clear water river that governs the changes in the apparent optical properties of the Negro River, even at distances that are greater than 90 km from its mouth. Better results were obtained using the Sentinel-2 MSI Red band (Band 4 at 665 nm) in order to estimate the SSC, with an R-2 value greater than 0.85 and an error less than 20% in the adjusted models. The magnitudes of water reflectance in the Sentinel-2 MSI Red band were consistent with in situ R-rs measurements, indicating the large spatial variability of the lower SSC values (0 to 15 mg L-1) in a complex anabranching reach of the Negro River. The in situ and satellite data analysed in this study indicates sedimentation processes in the lower Negro River near the Amazon River. The results suggest that the radiometric characteristics of sensors, like sentinel-2 MSI, are suitable for monitoring the suspended sediment concentration in large tropical black-water rivers
Spatial heterogeneity in nitrification and soil exploration by trees favour source-sink dynamics in a humid savanna : a modelling approach
No full textSavannas are structured ecosystems characterized by a grass layer interspersed with trees. Trees strongly modify their local environment and favour nutrient accumulation under their canopies. Tree roots can also forage horizontally far beyond the canopy projection to increase nutrient uptake. In the Lamto savanna (Cote d'Ivoire), grasses are able to inhibit nitrification while trees stimulate it. Here, we used a two-patch model simulating nitrogen (N) dynamics in a humid savanna between an open patch (without tree) associated with a low nitrification rate and a patch of tree clump associated with a high nitrification rate. The model also includes horizontal N fluxes between these two patches corresponding to horizontal soil exploration by tree roots. We analysed the impact of spatial heterogeneity in nitrification and soil horizontal exploration on N budget and plant biomass. Despite high N losses under trees due to nitrification stimulation by trees, our results show that the ability of trees to explore horizontally the open allows them to uptake more nutrients in total. This leads to an asymmetric N flux from the open to tree clumps, which contributes to nutrient enrichment under tree clumps and thereby to tree growth. Although trees have the ability to horizontally explore the soil to accumulate nutrients under their canopy, increasing the surface occupied by tree clumps increases N losses per hectare of savanna due to the increased nitrification under trees and the subsequent increase in NO3- leaching. While perennial savanna grasses show a restricted horizontal soil exploration to control nutrient availability, our results predict that the extension of tree roots outside their canopy increases their nutrient acquisition in the Lamto savanna. This study is the first one emphasizing the influence of horizontal exploration of trees and tree cover on savanna N budget and functioning. Overall, the proportion of tree cover and horizontal soil exploration are important factors to consider in savannas characterized by spatial heterogeneity in N cycling created by trees and grasses. These factors appear critical to the functioning of West African humid savannas and should be investigated in other savanna types
Large-scale movements and site fidelity of two bull sharks Carcharhinus leucas estimated from a double-tagging experiment at Reunion Island (southwest Indian Ocean)
No full textSince 2011, the mean number of bites per year by bull sharks Carcharhinus leucas has increased markedly at Reunion Island. To predict areas and periods of increased risk, we need to better understand the space-use dynamics of individual sharks. In coastal waters off Reunion Island, two bull sharks, one of each sex, were double-tagged and tracked for 174 days (male) and 139 days (female) using pop-up satellite archival tags (PSATs) and acoustic transmitters. Both sharks spent most of their time inshore (58.1% for the male and 89.9% for the female). The female performed short excursions but typically remained inshore. The male alternated between spending residence time along the coast and undertaking wide-ranging movements, including one extensive open-ocean excursion to the vicinity of a seamount situated about 210 km from the island. Differences in the residency and home range between the two sharks probably reflect different patterns of foraging and mating behaviours. Our results highlight the advantages of double-tagging in telemetry studies that attempt to estimate the degree of habitat fidelity of a species and illustrate the need to consider the movement patterns of sharks at different scales when developing efficient risk-mitigation management
Phase-velocity inversion from data-based diffraction kernels : seismic Michelson interferometer
No full textWe propose a new surface wave tomography approach that benefits from densely sampled active-source arrays and brings together elements from active-source seismic-wave interferometry, full waveform inversion and dense-array processing. In analogy with optical interferometry, seismic Michelson interferometer (SMI) uses seismic interference patterns given by the data-based diffraction kernels in an iterative inversion scheme to image a medium. SMI requires no traveltime measurements and no spatial regularization, and it accounts for bent rays. Furthermore, the method does not need computation of complex synthetic models, as it works as a data-driven inversion technique that makes it computationally very fast. In an automatic way, it provides high-resolution phase-velocity maps and their error estimation. SMI can complete traditional surface wave tomography studies, as its use can be easily extended from land active seismic data to the virtual source gathers of ambient-noise-based studies with dense arrays
Malaria in Cambodia : a retrospective analysis of a changing epidemiology 2006-2019
No full textBackground: In Cambodia, malaria persists with changing epidemiology and resistance to antimalarials. This study aimed to describe how malaria has evolved spatially from 2006 to 2019 in Cambodia. Methods: We undertook a secondary analysis of existing malaria data from all government healthcare facilities in Cambodia. The epidemiology of malaria was described by sex, age, seasonality, and species. Spatial clusters at the district level were identified with a Poisson model. Results: Overall, incidence decreased from 7.4 cases/1000 population in 2006 to 1.9 in 2019. The decrease has been drastic for females, from 6.7 to 0.6/1000. Adults aged 15-49 years had the highest malaria incidence among all age groups. The proportion of Plasmodium (P.) falciparum + Mixed among confirmed cases declined from 87.9% (n = 67,489) in 2006 to 16.6% (n = 5290) in 2019. Clusters of P. falciparum + Mixed and P. vivax + Mixed were detected in forested provinces along all national borders. Conclusions: There has been a noted decrease in P. falciparum cases in 2019, suggesting that an intensification plan should be maintained. A decline in P. vivax cases was also noted, although less pronounced. Interventions aimed at preventing new infections of P. vivax and relapses should be prioritized. All detected malaria cases should be captured by the national surveillance system to avoid misleading trends
