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Composition and structure of a stretch of tropical forest in the Eastern Amazon
No full textThe aim of this study was to determine the diversity. composition. forest structure of a stretch of dense ombrophilous forest in the state of Amapa. The area is located in the east of the state of Amapa. in the Eastern Amazon. at the following coordinates: 2 degrees 0'0.00 ' N. 14 degrees 0'0.00 ' O. The sampling process used was systematic. where nine plots of 1 ha (100 m x 100 rn) were allocated. 0.5 km apart. within a 13 km long and 0.03 km wide transect. The horizontal structure of the forest was evaluated using phytosociological parameters. One thousand seven hundred and ninety trees were sampled in this study. they were distributed in 131 species. 69 genera and 48 families. The species that presented more individuals were Pouteria guianensis Aubl. (136). Eschweilera coriacea (DC) S.A.Mori (78). lnga paraensis Ducke (45). Licania paraensis Prance (38). The area is highly diverse and dissimilar with great variability and complexity in vegetable formation
Influence of ocean salinity stratification on the tropical Atlantic Ocean surface
No full textThe tropical Atlantic Ocean receives an important freshwater supply from river runoff and from precipitation in the intertropical convergence zone. It results in a strong salinity stratification that may influence vertical mixing, and thus sea surface temperature (SST) and air-sea fluxes. The aim of this study is to assess the impact of salinity stratification on the tropical Atlantic surface variables. This is achieved through comparison among regional 1/4 degrees coupled ocean-atmosphere simulations for which the contribution of salinity stratification in the vertical mixing scheme is included or discarded. The analysis reveals that the strong salinity stratification in the northwestern tropical Atlantic induces a significant increase of SST (0.2 degrees C-0.5 degrees C) and rainfall (+ 19%) in summer, hereby intensifying the ocean-atmosphere water cycle, despite a negative atmospheric feedback. Indeed, the atmosphere dampens the oceanic response through an increase in latent heat loss and a reduction of shortwave radiation reaching the ocean surface. In winter, the impacts of salinity stratification are much weaker, most probably because of a deeper mixed layer at this time. In the equatorial region, we found that salinity stratification induces a year-round shoaling of the thermocline, reinforcing the cold tongue cool anomaly in summer. The concept of barrier layer has not been identified as relevant to explain the SST response to salinity stratification in our region of interest
Mid-infrared spectroscopy of earthworm bodies to investigate their species belonging and their relationship with the soil they inhabit
No full textInteractions of earthworm species with their environment and in particular the soil they inhabit is poorly understood. In this study, we aimed to use mid infrared absorption (MIR) spectroscopy of earthworm bodies in combination with discriminant analysis of principal components (DAPC), in order to investigate if their biogeochemical composition is determined by their species belonging or the soil they inhabit. Our conceptual approach included the comparison of MIR spectra of four earthworm species (Lumbricus terrestris, Allolobophora chlorotica, Aporrectodea caliginosa and Aporrectodea icterica) sampled from four different agricultural fields in France. Moreover, we tested the influence of the habitat on the earthworm MIR spectra by exchanging individuals and soils in an incubation experiment. MIR spectra varied according to species and sampling site. The MIR spectra of earthworm bodies also changed during the incubation experiment, and for L. terrestris, A. chlorotica and A. icterica depended on the properties of the soil ingested. This suggested that the food source in different habitats impacted the biogeochemical composition of earthworm bodies. DAPC allowed for the identification of earthworm species ranging from 64 to 100% of accuracy (mean 78%). We thus conclude that MIR spectroscopy may be a suitable approach to identify earthworm species, but that their signature may also allow to investigate their ecology as determined by the soil they inhabit
Asymptomatic hypoxia in COVID-19 is associated with poor outcome
No full textObjectives: Describe and evaluate the outcome of a coronavirus disease-2019 (COVID-19) patient without shortness of breath. Design and methods: We retrospectively collected data from COVID-19 patients diagnosed and cared for in Marseille, France. We selected data from patients who at admission, had a low dose CT scanner, dyspnea status, and oxygen saturation available. Blood gas was analyzed in a sample subset of patients. Results: Among 1712 patients with COVID-19, we report that 1107 (64.7%) do not complain of shortness of breath at admission. The low-dose computed tomography (LDCT) scan showed signs compatible with pneumonia in 757/1,107 (68.4%) of patients without dyspnea. In a subset of patients who had underwent at least one blood gas analysis (n = 161) and presented without dyspnea at admission, 28.1% (27/96) presented with a hypoxemia/hypocapnia syndrome. Asymptomatic hypoxia was associated with a very poor outcome (33.3% were transferred to the ICU and 25.9% died). Conclusion: The absence of shortness of breath in an old patient with comorbidity merit medical attention and should not be considered as a good sign of well-being. The poor prognosis of asymptomatic hypoxia, highlight the severity of this mild clinical presentation. In these patients, pulse oximetry is an important mean to predict the outcome along with news score and LDCT scanner
Historical and future contributions of inland waters to the Congo Basin carbon balance
No full textAs the second largest area of contiguous tropical rainforest and second largest river basin in the world, the Congo Basin has a significant role to play in the global carbon (C) cycle. For the present day, it has been shown that a significant proportion of global terrestrial net primary productivity (NPP) is transferred laterally to the land-ocean aquatic continuum (LOAC) as dissolved CO2, dissolved organic carbon (DOC), and particulate organic carbon (POC). Whilst the importance of LOAC fluxes in the Congo Basin has been demonstrated for the present day, it is not known to what extent these fluxes have been perturbed historically, how they are likely to change under future climate change and land use scenarios, and in turn what impact these changes might have on the overall C cycle of the basin. Here we apply the ORCHILEAK model to the Congo Basin and estimate that 4 % of terrestrial NPP (NPP = 5800 +/- 166 Tg C yr(-1)) is currently exported from soils and vegetation to inland waters. Further, our results suggest that aquatic C fluxes may have undergone considerable perturbation since 1861 to the present day, with aquatic CO2 evasion and C export to the coast increasing by 26 % (186 +/- 41 to 235 +/- 54 Tg C yr(-1)) and 25 % (12 +/- 3 to 15 +/- 4 Tg C yr(-1)), respectively, largely because of rising atmospheric CO2 concentrations. Moreover, under climate scenario RCP6.0 we predict that this perturbation could continue; over the full simulation period (1861-2099), we estimate that aquatic CO2 evasion and C export to the coast could increase by 79 % and 67 %, respectively. Finally, we show that the proportion of terrestrial NPP lost to the LOAC could increase from approximately 3 % to 5 % from 1861-2099 as a result of increasing atmospheric CO2 concentrations and climate change. However, our future projections of the Congo Basin C fluxes in particular need to be interpreted with some caution due to model limitations. We discuss these limitations, including the wider challenges associated with applying the current generation of land surface models which ignore nutrient dynamics to make future projections of the tropical C cycle, along with potential next steps
Defining the Rhizobium leguminosarum species complex
No full textBacteria currently included in Rhizobium leguminosarum are too diverse to be considered a single species, so we can refer to this as a species complex (the Rlc). We have found 429 publicly available genome sequences that fall within the Rlc and these show that the Rlc is a distinct entity, well separated from other species in the genus. Its sister taxon is R. anhuiense. We constructed a phylogeny based on concatenated sequences of 120 universal (core) genes, and calculated pairwise average nucleotide identity (ANI) between all genomes. From these analyses, we concluded that the Rlc includes 18 distinct genospecies, plus 7 unique strains that are not placed in these genospecies. Each genospecies is separated by a distinct gap in ANI values, usually at approximately 96% ANI, implying that it is a 'natural' unit. Five of the genospecies include the type strains of named species: R. laguerreae, R. sophorae, R. ruizarguesonis, "R. indicum" and R. leguminosarum itself. The 16S ribosomal RNA sequence is remarkably diverse within the Rlc, but does not distinguish the genospecies. Partial sequences of housekeeping genes, which have frequently been used to characterize isolate collections, can mostly be assigned unambiguously to a genospecies, but alleles within a genospecies do not always form a clade, so single genes are not a reliable guide to the true phylogeny of the strains. We conclude that access to a large number of genome sequences is a powerful tool for characterizing the diversity of bacteria, and that taxonomic conclusions should be based on all available genome sequences, not just those of type strains
Contrasting responses of woody and herbaceous vegetation to altered rainfall characteristics in the Sahel
No full textDryland ecosystems are a major source of land cover, account for about 40% of Earth's terrestrial surface and net primary productivity, and house more than 30% of the human population. These ecosystems are subject to climate extremes (e.g. large-scale droughts and extreme floods) that are projected to increase in frequency and severity under most future climate scenarios. In this modelling study we assessed the impact of single years of extreme (high or low) rainfall on dryland vegetation in the Sahel. The magnitude and legacy of these impacts were quantified on both the plant functional type and the ecosystem levels. In order to understand the impact of differences in the rainfall distribution over the year, these rainfall anomalies were driven by changing either rainfall intensity, event frequency or rainy-season length. The Lund-Potsdam-Jena General Ecosystem Simulator (LPJ-GUESS) dynamic vegetation model was parameterized to represent dryland plant functional types (PFTs) and was validated against flux tower measurements across the Sahel. Different scenarios of extreme rainfall were derived from existing Sahel rainfall products and applied during a single year of the model simulation timeline. Herbaceous vegetation responded immediately to the different scenarios, while woody vegetation had a weaker and slower response, integrating precipitation changes over a longer timeframe. An increased season length had a larger impact than increased intensity or frequency, while impacts of decreased rainfall scenarios were strong and independent of the season characteristics. Soil control on surface water balance explains these contrasts between the scenarios. None of the applied disturbances caused a permanent vegetation shift in the simulations. Dryland ecosystems are known to play a dominant role in the trend and variability of the global terrestrial CO2 sink. We showed that single extremely dry and wet years can have a strong impact on the productivity of drylands ecosystems, which typically lasts an order of magnitude longer than the duration of the disturbance. Therefore, this study sheds new light on potential drivers and mechanisms behind this variability
Malaria vectors diversity, insecticide resistance and transmission during the rainy season in peri-urban villages of south-western Burkina Faso
No full textBackground This study reports an updated description on malaria vector diversity, behaviour, insecticide resistance and malaria transmission in the Diebougou and Dano peri-urban areas, Burkina Faso. Methods Mosquitoes were caught monthly using CDC light traps and pyrethrum spray catches. Mosquitoes were identified using morphological taxonomic keys. PCR techniques were used to identify the species of the Anopheles gambiae complex and insecticide resistance mechanisms in a subset of Anopheles vectors. The Plasmodium sporozoite infection status and origins of blood meals of female mosquitoes were determined by ELISA methods. Larvae were collected, breed in the insectary and tested for phenotypic resistance against four insecticides using WHO bioassays. Results This study contributed to update the entomological data in two peri-urban areas of Southwest Burkina Faso. Anopheles populations were mostly anthropophilic and endophilic in both areas and exhibit high susceptibility to an organophosphate insecticide. This offers an alternative for the control of these pyrethroid-resistant populations. These data might help the National Malaria Control Programme for decision-making about vector control planning and resistance management. Conclusions This study contributed to update the entomological data in two peri-urban areas of Southwest Burkina Faso. Anopheles populations were mostly anthropophilic and endophilic in both areas and exhibit high susceptibility to an organophosphate insecticide. This offers an alternative for the control of these pyrethroid-resistant populations. These data might help the National Malaria Control Programme for decision-making about vector control planning and resistance management
Iron homeostasis in host and gut bacteria : a complex interrelationship
No full textIron deficiency is the most frequent nutritional deficiency in the world with an estimated 1.4 billion people affected. The usual way to fight iron deficiency is iron fortification, but this approach is not always effective and can have undesirable side effects including an increase in the growth and virulence of gut bacterial pathogens responsible for diarrhea and gut inflammation. Iron is mainly absorbed in the duodenum and is tightly regulated in mammals. Unabsorbed iron enters the colonic lumen where many microorganisms, referred to as gut microbiota, reside. Iron is essential for these bacteria, and its availability consequently affects this microbial ecosystem. The aim of this review is to provide further insights into the complex relationship between iron and gut microbiota. Given that overcoming anemia caused by iron deficiency is still a challenge today, gut microbiota could help identify more efficient ways to tackle this public health problem