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1.1-billion-year-old porphyrins establish a marine ecosystem dominated by bacterial primary producers
No full textThe average cell size of marine phytoplankton is critical for the flow of energy and nutrients from the base of the food web to higher trophic levels. Thus, the evolutionary succession of primary producers through Earth's history is important for our understanding of the radiation of modern protists similar to 800 million years ago and the emergence of eumetazoan animals similar to 200 million years later. Currently, it is difficult to establish connections between primary production and the proliferation of large and complex organisms because the mid-Proterozoic (similar to 1,800-800 million years ago) rock record is nearly devoid of recognizable phytoplankton fossils. We report the discovery of intact porphyrins, the molecular fossils of chlorophylls, from 1,100-million-year-old marine black shales of the Taoudeni Basin (Mauritania), 600 million years older than previous findings. The porphyrin nitrogen isotopes (delta N-15(por) = 5.6-10.2 parts per thousand) are heavier than in younger sedimentary sequences, and the isotopic offset between sedimentary bulk nitrogen and porphyrins (epsilon(por) = -5.1 to -0.5 parts per thousand) points to cyanobacteria as dominant primary producers. Based on fossil carotenoids, anoxygenic green (Chlorobiacea) and purple sulfur bacteria (Chromatiaceae) also contributed to photosynthate. The low epsilon(por) values, in combination with a lack of diagnostic eukaryotic steranes in the time interval of 1,600-1,000 million years ago, demonstrate that algae played an insignificant role in mid-Proterozoic oceans. The paucity of algae and the small cell size of bacterial phytoplankton may have curtailed the flow of energy to higher trophic levels, potentially contributing to a diminished evolutionary pace toward complex eukaryotic ecosystems and large and active organisms
Sediment-stabilising and -destabilising ecoengineering species from river to estuary: the case of the Scheldt system
Get PDFThree years of measurements of light-absorbing aerosols over coastal Namibia: seasonality, origin, and transport
Get PDFContinuous measurements between July 2012 and December 2015 at the Henties Bay Aerosol Observatory (HBAO; 22∘ S, 14∘05′ E), Namibia, show that, during the austral wintertime, transport of light-absorbing black carbon aerosols occurs at low level into the marine boundary layer. The average of daily concentrations of equivalent black carbon (eBC) over the whole sampling period is 53 (±55) ng m−3. Peak values above 200 ng m−3 and up to 800 ng m−3 occur seasonally from May to August, ahead of the dry season peak of biomass burning in southern Africa (August to October). Analysis of 3-day air mass back-trajectories show that air masses from the South Atlantic Ocean south of Henties Bay are generally cleaner than air having originated over the ocean north of Henties Bay, influenced by the outflow of the major biomass burning plume, and from the continent, where wildfires occur. Additional episodic peak concentrations, even for oceanic transport, indicate that pollution from distant sources in South Africa and maritime traffic along the Atlantic ship tracks could be important. While we expect the direct radiative effect to be negligible, the indirect effect on the microphysical properties of the stratocumulus clouds and the deposition to the ocean could be significant and deserve further investigation, specifically ahead of the dry season
AbeTx1 is a novel sea anemone toxin with a dual mechanism of action on Shaker-type K+ channels activation
Get PDFVoltage-gated potassium (KV) channels regulate diverse physiological processes and are an important target for developing novel therapeutic approaches. Sea anemone (Cnidaria, Anthozoa) venoms comprise a highly complex mixture of peptide toxins with diverse and selective pharmacology on KV channels. From the nematocysts of the sea anemone Actinia bermudensis, a peptide that we named AbeTx1 was purified and functionally characterized on 12 different subtypes of KV channels (KV1.1–KV1.6; KV2.1; KV3.1; KV4.2; KV4.3; KV11.1; and, Shaker IR), and three voltage-gated sodium channel isoforms (NaV1.2, NaV1.4, and BgNaV). AbeTx1 was selective for Shaker-related K+ channels and is capable of inhibiting K+ currents, not only by blocking the K+ current of KV1.2 subtype, but by altering the energetics of activation of KV1.1 and KV1.6. Moreover, experiments using six synthetic alanine point-mutated analogs further showed that a ring of basic amino acids acts as a multipoint interaction for the binding of the toxin to the channel. The AbeTx1 primary sequence is composed of 17 amino acids with a high proportion of lysines and arginines, including two disulfide bridges (Cys1–Cys4 and Cys2–Cys3), and it is devoid of aromatic or aliphatic amino acids. Secondary structure analysis reveals that AbeTx1 has a highly flexible, random-coil-like conformation, but with a tendency of structuring in the beta sheet. Its overall structure is similar to open-ended cyclic peptides found on the scorpion κ-KTx toxins family, cone snail venoms, and antimicrobial peptides
Precision fish farming: a new framework to improve production in aquaculture
Get PDFAquaculture production of finfish has seen rapid growth in production volume and economic yield over the last decades, and is today a key provider of seafood. As the scale of production increases, so does the likelihood that the industry will face emerging biological, economic and social challenges that may influence the ability to maintain ethically sound, productive and environmentally friendly production of fish. It is therefore important that the industry aspires to monitor and control the effects of these challenges to avoid also upscaling potential problems when upscaling production. We introduce the Precision Fish Farming (PFF) concept whose aim is to apply control-engineering principles to fish production, thereby improving the farmer's ability to monitor, control and document biological processes in fish farms. By adapting several core principles from Precision Livestock Farming (PLF), and accounting for the boundary conditions and possibilities that are particular to farming operations in the aquatic environment, PFF will contribute to moving commercial aquaculture from the traditional experience-based to a knowledge-based production regime. This can only be achieved through increased use of emerging technologies and automated systems. We have also reviewed existing technological solutions that could represent important components in future PFF applications. To illustrate the potential of such applications, we have defined four case studies aimed at solving specific challenges related to biomass monitoring, control of feed delivery, parasite monitoring and management of crowding operations
'<i>Posidonia</i> meadows calling': a ubiquitous fish sound with monitoring potential
Get PDFIn the Mediterranean Sea, the seagrass Posidonia oceanica plays a key ecological role, and is protected by a range of legislation. Standard Posidonia monitoring programmes generally focus on the plant at different spatial and short temporal scales, without considering the organisms dependent on the ecosystem. Passive acoustic monitoring (PAM) has a high potential to non‐intrusively monitor biological activities and biodiversity at high temporal resolution, and to assess ecosystem health. This is particularly relevant considering that Posidonia meadows host numerous sound‐producing fish species. In this study, bottom‐moored hydrophones were deployed in nine Western Mediterranean meadows covering a distance of more than 200 km to identify acoustic features potentially relevant to monitor this critical habitat. Among eight identified fish sound categories, we found a single type of sound (that we will refer to as /kwa/) dominating the soundscape of Posidonia meadows over a time span of 7 months. Compared to other low‐frequency sounds, the /kwa/ presented unique characteristics that suggest it is produced by a fish via fast contracting muscles. The /kwa/ was the only sound detectable under anthropogenic noise conditions, and little affected by it. Cluster analyses performed on 13 acoustic features revealed a high degree of call diversity. /kwa/ diversity, combined with its large‐scale (all meadows), long‐term (7 months) occurrence and low noise interference, make the /Kwa/ a promising candidate for PAM of Posidonia meadows. Furthermore, variability in acoustic features suggests a central role of the /kwa/ in communication. Overall, this work sets the basis for establishing the relevance of the /kwa/ in monitoring P. oceanica meadows and developing PAM techniques for this critical habitat
Properties of temporary adhesion systems of marine and freshwater organisms
No full textUnderwater adhesive secretions are a promising source of inspiration for biomedical and industrial applications. Although marine permanent adhesives have been extensively investigated, reversible adhesion, e.g. as used for locomotion and feeding, is still poorly understood. Here, we summarise the current knowledge on secretion-based, temporary adhesive systems in aquatic environments, with a special emphasis on the morphology and structure of adhesive organs and adhesive material. Many animals employing temporary adhesion to the substratum rely on so-called duo-gland adhesive organs, consisting of two secretory gland cells and one supportive cell. We give a detailed depiction of a basic duo-gland adhesive organ and variations thereof. Additionally, we discuss temporary adhesive systems with an alternative building plan. Next, the topography of secreted adhesive footprints is described based on examples. The limited data on the composition of temporary adhesives are summarised, separating known protein components and carbohydrate residues. There are still large gaps in our understanding of temporary adhesion. We discuss three proposed models for detachment, although the actual mechanism of voluntary detachment is still a matter for debate
DNA methylation in adults and during development of the self-fertilizing mangrove rivulus, <i>Kryptolebias marmoratus</i>
Get PDFIn addition to genetic variation, epigenetic mechanisms such as DNA methylation might make important contributions to heritable phenotypic diversity in populations. However, it is often difficult to disentangle the contributions of genetic and epigenetic variation to phenotypic diversity. Here, we investigated global DNA methylation and mRNA expression of the methylation‐associated enzymes during embryonic development and in adult tissues of one natural isogenic lineage of mangrove rivulus fish, Kryptolebias marmoratus. Being the best‐known self‐fertilizing hermaphroditic vertebrate affords the opportunity to work with genetically identical individuals to examine, explicitly, the phenotypic effects of epigenetic variance. Using the LUminometric Methylation Assay (LUMA), we described variable global DNA methylation at CpG sites in adult tissues, which differed significantly between hermaphrodite ovotestes and male testes (79.6% and 87.2%, respectively). After fertilization, an immediate decrease in DNA methylation occurred to 15.8% in gastrula followed by re‐establishment to 70.0% by stage 26 (liver formation). Compared to zebrafish, at the same embryonic stages, this reprogramming event seems later, deeper, and longer. Furthermore, genes putatively encoding DNA methyltransferases (DNMTs), Ten‐Eleven Translocation (TET), and MeCP2 proteins showed specific regulation in adult gonad and brain, and also during early embryogenesis. Their conserved domains and expression profiles suggest that these proteins play important roles during reproduction and development. This study raises questions about mangrove rivulus’ peculiar reprogramming period in terms of epigenetic transmission and physiological adaptation of individuals to highly variable environments. In accordance with the general‐purpose genotype model, epigenetic mechanisms might allow for the expression of diverse phenotypes among genetically identical individuals. Such phenotypes might help to overcome environmental challenges, making the mangrove rivulus a valuable vertebrate model for ecological epigenetic studies. The mangrove rivulus, Kryptolebias marmoratus, is the best‐known self‐fertilizing hermaphroditic vertebrate that allows to work with genetically identical individuals to examine, explicitly, the phenotypic effects of epigenetic variance. The reprogramming event is later, more dramatic and longer than in other described vertebrates. High evolutionary conservation and expression patterns of DNMT, TET, and MeCP2 proteins in K. marmoratus suggest biological roles for each member in gametogenesis and development
Sea lions develop human-like vernix caseosa delivering branched fats and squalene to the GI tract
Get PDFVernix caseosa, the white waxy coating found on newborn human skin, is thought to be a uniquely human substance. Its signature characteristic is exceptional richness in saturated branched chain fatty acids (BCFA) and squalene. Vernix particles sloughed from the skin suspended in amniotic fluid are swallowed by the human fetus, depositing BCFA/squalene throughout the gastrointestinal (GI) tract, thereby establishing a unique microbial niche that influences development of nascent microbiota. Here we show that late-term California sea lion (Zalophus californianus) fetuses have true vernix caseosa, delivering BCFA and squalene to the fetal GI tract thereby recapitulating the human fetal gut microbial niche. These are the first data demonstrating the production of true vernix caseosa in a species other than Homo sapiens. Its presence in a marine mammal supports the hypothesis of an aquatic habituation period in the evolution of modern humans
Occurrence of <i>Chromadorita regabi</i> sp. nov. (Nematoda: Adenophorea), a nematode egg predator of <i>Alvinocaris muricola</i> (Crustacea: Decapoda: Caridea: Alvinocarididae) from a deep cold seep area of the Gulf of Guinea
Get PDFSeveral individuals belonging to a new species of the genus Chromadorita (Nematoda: Adenophorea) were collected in a cold-seep area in the Gulf of Guinea during two French cruises: BIOZÄIRE 2 (2001) and BIOZAÏRE 3 (2003–2004) on board the R/V L’Atalante. In this area, rich chemosynthetic benthic communities have been discovered at 3150 m depth in the large pockmark field named Regab. Chromadorita regabi sp. nov. was found among the eggs in ovigerous specimens of the shrimp Alvinocaris muricola. The combination of long size (1500–2200 µm), nine strong preanal papillae and relatively small dorsal tooth with weak musculature distinguishes this species from all known congeneric ones. An identification key to all known species of Chromadorita is provided