HAYATI Journal of Biosciences
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Ecological Diversity of Microbial Consortium Feces of Beef Cattle and Lignite Coal
Get PDFIncreasing energy demand is not alongside the availability of limited fossil fuels. Alternative and renewable energy sources are not only an option to overcome energy problems but also essential to minimize global warming. Another critical and promising renewable energy source is biomass-derived from livestock feces. Beef cattle feces contain a microorganism consortium that can be used as a starter with coal media to form biogas. Indonesia recently developed coal waste processing into renewable energy, such as biogas. This study aimed to overview the ecological diversity of microbial consortium of beef cattle feces, lignite coal waste, and a combination of livestock and lignite coal waste under mesophilic conditions. This research is an explorative method, the data obtained were analyzed descriptively. The process of formation was carried out anaerobically on a bottle containing the rumen fluid medium. The fermentation process lasted 42 days at 39℃ of temperature. After that, the sample was electrophoresis, followed by next-generation sequencing (NGS) method. NGS data is processed with the MG-Rast website. This study demonstrates the ecological diversity of microbial consortium of beef cattle, lignite coal waste, and a combined consortium. The results showed ecological diversity in the form of taxonomy dominated by bacteria, eukaryotes, and archaea
Antagonistic Activity of Fungal Endophytes Isolated from Garcinia atroviridis against Colletotrichum gloeosporioides
Get PDFThe extensive use of synthetic fungicides in controlling plant disease generates detrimental impacts on the environment and human health. In response to this problem, an alternative method was developed, known as biological control using antagonistic microorganisms. Since investigation on fungal endophytes of Garcinia atroviridis is still unclear, it was chosen for the study. The aim of the present work was to evaluate biocontrol potential of endophytic fungi against Colletotrichum gloeosporiodes, a phytopathogen that caused anthracnose disease. A total of 92 endophytic fungi were isolated from different tissue parts of Garcinia atroviridis including leaves, petioles, branches, and fruits. Results demonstrated that, most of endophytic fungal isolates showed some inhibitory action over the growth of C. gloeosporiodes during dual culture growth. Endophyte isolate F14 showed the highest antagonistic activity against Colletotrichum gloeosporiodes with 67.38% percentage inhibition radial growth (PIRG). However, 7 out of 92 isolates showed no inhibitory effect against Colletotrichum gloeosporiodes. In conclusion, endophytic fungi isolated from G. atroviridis indicate the potential as biocontrol agents. It is hoped that the finding of isolated endophytic fungi in this study with antagonistic activity against anthracnose pathogen may be used in biocontrol programmes of plant disease in the region
Apoptotic Potential of Secretome from Interleukin-Induced Natural Killer Cells toward Breast Cancer Cell Line by Transwell Assay
Get PDFBreast cancer (BC) is the number one cause of deaths from cancer in women. Metastasis in BC is caused by immunosurveillance deficiency, including impairment of Natural Killer (NK) cell maturation, low NK activity, and decreasing cytotoxicity. This study was performed to improve activating receptors and cytotoxicity of NK cells using interleukin 15 (IL15) against BC cells. Human recombinant IL15 was used to induce NK cells. To evaluate the potential of IL15 in inducing NK cells, we measured the activating and inhibiting receptors (NKG2D, NKG2A), apoptotic potency of NK cells on BC cells (MCF7) using transwell assay. The IL15 inducer on the NK cell were measured NKG2D, NKG2A gene expression with quantitative polymerase chain reaction (qPCR), (GzmB) secretion using ELISA, apoptotic gene expression of MCF7 using qPCR. IL15 increased NKG2D expression 4.01-9.13%, but IL15 could not affect toward NKG2A expression on NK cells. IL15-activated NK cells, inhibited BC cells proliferation, induced apoptotic BC cells 25.89-32.19%, induced apoptotic genes of BC cells bax, p53. IL15 increase NK activating receptor (NKG2D), inhibit BC cells proliferation, induce apoptotic percentage and induce apoptotic gene expression
Localization of Alkaloid and Other Secondary Metabolites in Cinchona ledgeriana Moens: Anatomical and Histochemical Studies on Fresh Tissues and Cultured Cells
Get PDFCinchona ledgeriana produces several secondary metabolites. The main quinoline alkaloid, quinine that is widely used as an antimalarial drug, is most commonly extracted from the bark of Cinchona, and its leaves contain several other metabolites. Many studies have revealed that cell culture of Cinchona also produces quinine. Nevertheless, the sites of secondary metabolites accumulation are still elusive. This study is aimed at describing specific anatomical structures where alkaloids and some other secondary metabolites are accumulated as well as their localization in leaves and barks of C. ledgeriana, compared to those found in cultured cells. Fresh leaves and barks, and cells of C. ledgeriana were used for anatomical observation and histochemical tests. It was found that these plant parts have specialized structures, idioblast cells with elliptical- and spherical-shapes, scattered in leaf hypodermis, stem cortex, and secondary phloem. Unspecialized structures such as epidermis and palisade mesophyll tissues were also found accumulating some metabolites. Histochemical tests showed that bark and leaves contained alkaloids, terpenoids, phenolic, and lipophilic compounds. Cultured cells presented positive results for alkaloids and terpenoids
Propolis Components and Biological Activities from Stingless Bees Collected on South Sulawesi, Indonesia
Get PDFThree new compounds, namely sulabiroins A (1) and B (2), and 2\u27,3\u27-dihydro-3\u27-hydroxypapuanic acid (3), were isolated from the propolis of stingless bees (Tetragonula aff. biroi) collected on South Sulawesi, Indonesia. In addition, ten known compounds, (–)-papuanic acid (4), (–)-isocalolongic acid (5), isopapuanic acid (6), isocalopolyanic acid (7), glyasperin A (8), broussoflavonol F (9), (2S)-5,7-dihydroxy-4\u27-methoxy-8-prenylflavanone (10), isorhamnetin (11), (1\u27S)-2-trans,4-trans-abscisic acid (12), and (1\u27S)-2-cis,4-trans-abscisic acid (13) were identified. The structures of the new and known compounds were determined by spectroscopic analysis. The absolute configurations of sulabiroins A (1) and B (2) were determined by X-ray crystallography analysis and ECD calculation, respectively. The propolis from stingless bee (Tetragonula aff. biroi) collected on South Sulawesi contained compounds not present in propolis from other regions. Sulabiroin A (1) and isorhamnetin (11) were examined for xanthine oxidase (XO) inhibitory activity as one of biological activities; isorhamnetin (11) exhibited potent XO inhibitory activity, with an IC50 value of 3.9 µm
Biological Conservation of Molluscs Based on Spatial and Temporal Distribution in Tropical Tidal Lake, Medan-Indonesia
Get PDFThe tidal lake ecosystem is formed by the flow of the Belmera River and seawater through a tidal process along a course of 12 km from Belawan (Malacca Strait). This lake has a tidal lake that has the characteristics of fresh water to brackish water and Mollusc communities from freshwater species to brackish water species. This study was performed to develop a mollusc conservation strategy based on the spatial and temporal distribution of Mollusca in the tides. The study was conducted from September 2018-August 2019. Mollusc samples were taken every month at high tide and low tide using a Petersen grab tool. Nine Mollusca species, consisting of three bivalves and six gastropods, were identified. Polymedosa expansa is a mollusc species that is considered for conservation. The population size of P. expansa is small, and its distribution is limited to the northern lake. P. expansa was found only in September at high tide and in December at low tide. Competition among Mollusca and habitat availability are obstacles to the survival of P. expansa. The habitat of P. expansa is mangrove, and therefore a conservation approach was carried out through improvement of mangrove quality
Implementation of SExI–FS (Spatially Explicit Individual-based Forest Simulator) Model using UAV Aerial Photo Data Case Study: Jatinangor ITB Campus
Get PDFLandscape architecture affected by interaction between built and natural environment such as vegetation. Nowadays, landscape architects are using 3D city models for simulations, which requires highly dynamic and time-varying attributes. 3D city modelling structure has been standardized by CityGML, although researches that are related to the storing of dynamic data had been conducted for the past years, it has not been supported by any standard until this very moment. In dynamizer, it is added as a data structure into a CityGML structure that is already existed, although the existing structure is a static one. Kolbe’s research on dynamic data using CityGML called dynamizer could use the spatial data in more dynamic way by changing its geometric, thematic, or appearance data, but its purpose is not specific for trees or vegetation. In this paper, a method of simulating the vegetation growth using SeXI-FS will be discussed to show the dynamic changes that happen in vegetation as part of the dynamic changes in landscape architecture. The result of this research will be used to address the importance of information on vegetation by studying its changes in Jatinangor ITB Campus and as initial research to build dynamizer in CityGML for landscape architecture
Mammalian Diversity of Gunung Ledang, Johor, Peninsular Malaysia
Get PDFMammals play a crucial role for the biotic processes of the rainforest ecosystem. Studying their behaviour and biology are vital to fully understand the jigsaw of rainforest dynamics. This study was made to update the diversity checklist of mammals in Gunung Ledang. This study was done in Taman Negara Johor; Gunung Ledang (2.37°N, 102.60°E) where it is known to be the highest mountain (1,276 m asl.) in the southern Malay Peninsula. This study was conducted from July 2018 to April 2019. In total, 22 cameras were installed along three nature trails which are Sagill trail, Telekom Trail, and Resort Trail. Overall, a total of 31 species of terrestrial mammals from small- to large-sized were recorded in our camera trapping study of 3434 camera-days.Mammals such as the Leopard (Panthera pardus), Sumatran Serow (Capricornis sumatraensis), and Malayan Tapir (Tapirus indicus) were caught in the videos of camera trap. This showed that the diversity of mammals in Gunung Ledang is quite high. Tthis paper already gave valuable insights in a rainforest guild that is highly diverse and of outstanding value to the forest ecosystem. Management plans and strategy to conserve the mammals in Gunung Ledang can be done as accordingly afterwards
Functional Analysis of an Appressorium-Specific Gene from Colletotrichum gloeosporioides
Get PDFA novel gene (CAS2) specifically expressed during appressorium formation was isolated from Colletotrichum gloeosporioides using Differential Display RT-PCR. CAS2 comprises 368 deduced amino acid residues and is 50% identical to a hypothetical protein from Chaetomium globosum. ProtFun 2.2 server analysis predicted that Cas2 functions as a transport and binding protein. Based on putative transmembrane domain prediction software (HMMTOP), Cas2 protein is composed of five alpha-helical transmembrane domains with a very short external N-terminus tail and long internal C-terminus. ExPASy ScanProsite analysis showed the presence of integrin beta chain cysteine-rich domain, N-myristoylation site, EGF-like domain, 2Fe-2S ferredoxins, iron-sulfur binding region, VWFC domain, fungal hydrophobins signature, membrane lipoprotein lipid attachment site, and Janus-faced atracotoxin (J-ACTX) family signature in CAS2 protein. Mutants with deleted CAS2 were not significantly different in terms of vegetative growth, conidiation, and appressoria production compared to wild type. However, the Cas2 mutant produced multipolar germination, a feature which distinguishes it from wild type strain. Interestingly, the mutant is non-virulent to mango fruits, indicating that CAS2 may encode proteins that function as novel virulence factors in fungal pathogens
Selection of early maturing and high yielding mutants of Toraja Local Red Rice Grown from M2-M3 Population after Ion Beam Irradiation
Get PDFThis study aims to obtain the genotype of local Toraja red rice M2 mutants that have the potential to be developed into early maturing varieties and have high yields. Research carried out with a mass selection method consisting of two irradiation treatments, namely: (1) irradiation with a Carbon ion dose of 150 Gy (PL-C); (2) irradiation with Argon ion dose of 10 Gy (PL-A) and control as a comparison. Selected strains of M2 seed population were planted in experimental strains plus 2 strains as control, each row had 50 plants. Selection is done in two stages. The first stage, the selection is based on the criteria of plant growth components, to select rice plants that have early-middle age characters, dwarf-semi-dwarf, and many tillers. The second stage, selected strains from the scoring method were then grouped based on the degree of similarity with the cluster analysis method. Irradiation with ion beams produces mutants with shorter harvest times than their parents, with the harvest time 16-17 days or 10% shorter compared to their parents. This study produced 10 selected strains, 5 strains of carbon ion and 5 strains of argon ion irradiation treatment, and formed 5 groups with a 90% similarity coefficient