HAYATI Journal of Biosciences
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An Extensive Coverage Anoa Distribution Modelling in Sulawesi Using Maximum Entropy
Get PDFAs an endangered species, Anoa (Bubalus depressicornis and Mountain Bubalus quarlesi) inhabiting the Sulawesi island requires proper conservation both in and out of their native habitat. The study of anoa habitat is mainly conducted through field studies based on firsthand observations of anoa appearance, footprints, or excrement or through social surveys from residents who saw it directly. The studies are carried out specifically in a particular area with a relatively narrow. However, in practice, this method has limitations, such as the research location determined based on the possibility of anoa, limited research area, and inefficient use of resources. Therefore, this study aimed to model the potential habitat of anoa in the whole of Sulawesi island. This study was based on physical and environmental independent variables such as DEM, surface slope, LST, NDVI, and access to inland water, as well as in-situ species distribution retrieved from scientific papers and reports. This study discovered the likely anoa distribution on Sulawesi island, both inside and outside of its native habitat. LST is the most important independent variable in determining habitat suitability, accounting for 80% of the total, followed by water (15.3%), NDVI (2.9%), DEM (1.6%), and slope (0.3%)
Fermentation of Gracilaria verrucosa to Reduce Insoluble Non-Starch Polysaccharide (iNSP) Using Cellulolytic Bacteria Pseudomonas stutzeri (ISO2) for a Dietary Ingredient of Golden Rabbitfish, Siganus guttatus
Get PDFA series of experiments were conducted to optimize P. stutzeri (ISO2) fermentation in reducing the non-starch polysaccharide (NSP) of G. verrucosa as golden rabbitfish feed ingredient. A completely randomized experimental design in triplicates was used to optimize the pH of CMC media and the duration of fermentation. Using a 3 × 3 factorial design with two factors and triplicates, the optimum substrate-inoculum interaction was determined. Nine levels combination of G. verrucosa (G1 = 50 g; G2 = 100 g; G3 = 150 g) and P. stutzeri inoculum (P1 = 5%; P2 = 10%; P3 = 15%) were investigated. Cellulolytic activity (CA) of P. stutzeri was measured using UV-vis spectrophotometer, meanwhile chemical compound and physical characteristics of fermented G. verrucosa were evaluated using Fourier Transform Infra Red (FTIR) and Scanning Electron Microscope (SEM) respectively. Data on fermentation optimization were analyzed statistically using ANOVA. The result indicated pH, duration of fermentation and substrate-inoculum ratio had a significant effect on bacteria growth and CA (P<0.05). P. stutzeri grew well at pH 8, the fermentation process was ideally running in four days with (150 g-10%) G:P level. Hemicellulose was the most biodegradable NSP compared to cellulose and lignin. Fermented G. verrucosa (FG) had FTIR vibrations which indicated the conversion of the cell wall to reducing sugar. The fermentation process resulted in surface structure changes of G. verrucosa based on SEM photos
An Introduction to Indonesian Wild Shiitake
Get PDFPegler suggested that shiitake comprises three morphological species: Lentinula edodes (continental and northeast Asia), L. lateritia (tropical Asia and Australasia), and L. novae-zelandiae (New Zealand). The current study reported for the first time the occurrence of L. lateritia (Berk.) Pegler in Indonesia. During a fungus foray in Kerinci (Jambi, Sumatra, Indonesia) in 2022 and 2023 by the Indonesian mushroom hunter community, some basidiomata of Lentinula were obtained. At a glance, our specimens resembled L. edodes. The current study aims to justify the taxonomical position of our specimens based on morphological and molecular data. The fresh basidiomata were used for morphological and molecular analyses. The molecular work was done using ITS 4/5 Primers for phylogenetic analysis of rDNA-ITS region. Morphologically, the uniformly reddish brown, smooth, and glabrous of pileus confirmed our specimens as L. lateritia. In addition, the absence of a range of colors and squamules pileus distinguished L. lateritia BO24628 form L. edodes, while the formation of florets cheilocystidia in L. madagasikarensis was the distinctive character of our specimens. The BLAST result revealed that our specimen has high similarity (99-100%) with L. lateritia and L. edodes as the top hits. The phylogenetic tree (RAxML) nested our specimens in the L. lateria clade and is closely related to one specimen from Papua New Guenia (PNG) (BS 98%). In addition, L. lateritia BO24628 has a sister clade of the specimen from PNG and Australia. Moreover, we provide the herbarium collection of wild L. lateritia in Indonesia
Thermal Drone Technology Used to Capture Thermoregulation in Wild Sumatran Elephants
Get PDFDrone technology plays a critical role in supporting conservation efforts for endangered species, not only in terms of species monitoring within various landscapes, but also potentially when applied to behavioral studies to investigate interaction patterns and response to environmental change. We tested a thermal drone to investigate thermoregulation and surface temperature of wild Sumatran elephants in the lowland tropical forest of Jambi, Indonesia. Thermoregulation data was obtained using RGB images and videos, while temperature values were measured from thermal images (R-JPEG) extracted into TIFF equipped with pixel temperature. We detected a visual thermoregulation mechanism known as mud bathing. Our study demonstrated that the trunk functions to draw mud and throw it onto the head, back, and stomach, the tail functions to distribute the mud to all parts of the back of the body, while the ears flapped to keep head temperature cool. Our measurements showed that the surface temperature of Sumatran elephants is between 28.9-30.3°C. The head had a relatively lower temperature than other body parts. This study also revealed that the environmental humidity variable significantly affects the elephant\u27s temperature rise. The use of drone technology for future behavioral studies is recommended as it accurately provides high quality data and can be widely used in any type of terrain
Anatomical Studies and Evaluation of Genetic Stability in Plantlets Derived from Somatic Embryos of Arabica Coffee
Get PDFAnatomical characteristics regenerant plantlet of Arabica coffee (Coffea arabica L.) were observed to determine the difference of plantlet performance between Sigararutang and Maragogige grown in shooting and rooting medium. Transverse sections of the fresh roots, stems and leaves of three-month-old plantlets from somatic embryos were collected and used for the study. Sigararutang and Maragogipe as the plantlet materials were chosen based on the bean size and the origin. Stomata were microscopically observed on the abaxial leaf paradermal section. A conformity test to compare between plantlet and the parent plant was observed to perform genetic stability. Assessment of genetic stability was measured by using the sequence of trnL (UAA) region. The result showed that all the anatomical roots, stems and leaves of the Maragogipe plantlet have a greater number than Sigararutang (root diameter, cortex thickness, distance of long stele, distance of short stele, endodermis thickness, stem diameter, cortex thickness, maximum stele diameter, minimum stele diameter, epidermis thickness, diameter of stomatal closing, length of stomatal closing, total stomatal density, adaxial epidermis density, midrib thickness, adaxial epidermis thickness, abaxial epidermis thickness, diameter of the vascular bundles, lamina thickness), except of epidermis thickness, diameter of the vascular bundles, diameter of stomatal aperture, diameter of stomatal opening, length of stomatal opening and abaxial epidermis density. Taxonomists may be able to use these anatomic traits as supplementary proof in the determination of Arabica coffee. Molecular analysis showed that there were genetically identical organisms between the plantlet and the parent plant. It was indicated there was no somaclonal variation during somatic embryogenesis in the micropropagation of Arabica coffee
Antioxidative Parameters Improvements on Nutritional Approach: A Study on Hypoxic Multiple Organs of Sprague-Dawley
Get PDFIn various organs, such as the heart, kidneys, and colon, hypoxia enhances the generation of reactive oxygen species (ROS). However, the effects of reoxygenation, as occurs in intermittent hypoxia (IH) to achieve full recovery of hypoxic organs, are not yet clear. The acclimatization response can boost blood oxygen transport capacity, while hypoxia ROS can impact erythrocytes and plasma behavior, resulting in poor peripheral blood flow. This study aimed to study the antioxidant impact of puree Ficus carica (PFC) in rats with IH-induced oxidative stress. Twenty-nine Sprague-Dawley rats were randomly divided into five groups: group N (control, untreated and not exposed to IH, and Group HC was exposed to hypoxia and received distilled water. Group HPF-6.25, HPF-12.5, and HPF-25 (n = 6) received PFC with doses 6.25; 12.5; and 25 ml/kg/d, respectively for 4 weeks before IH exposure. At the end of 4 weeks, all animals except controls were exposed to IH (10% O2 and 90% N2; 4 hours/day for one week). Hematological parameters were measured with several oxidative stress indicators. Hypoxic rats exhibited substantially higher hemoglobin, hematocrit, and mean corpuscular hemoglobin concentrations. All groups exposed to IH showed increased malondialdehyde (MDA) and decreased superoxide dismutase (SOD) activity in the heart, kidneys, and colon. The increasing MDA and decreasing SOD compared to controls and pre-treatment using PFC had a dose-dependent protective effect on the heart, kidneys, and colon
Oxidative Stress, Hypoxia-Inducible Factor-1α, and Nuclear Factor-Erythroid 2-Related Factor 2 in the Hearts of Rats Exposed to Intermittent Hypobaric Hypoxia
Get PDFHypobaric hypoxia is situation that might occur to helicopter pilots in Indonesia who must fly at an altitude of more than 3,048 m such as in Papua. It can be dangerous because hypoxic condition can affect person\u27s performance. So far, the heart is known as an aerobic organ and very sensitive to hypoxic conditions. Hitherto, the effects of hypobaric hypoxia exposure on biomolecular aspects of the heart are still unclear. Therefore, this study assessed cardiac response in rats exposed to intermittent hypobaric hypoxia (IHH) (equivalent to 3,048 meters/10,000 feet). Sprague-Dawley rats were divided into six groups: control; acute hypobaric hypoxia (AHH); and IHH, for 7; 14; 21; and 28 days. We measured super oxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx) activities, reduced glutathione (GSH), malondialdehyde (MDA), cytoglobin, myoglobin, HIF-1α, and Nrf2 level as our parameters. Activities of SOD, CAT, GPx and GSH increased while the levels of MDA, cytoglobin, myoglobin, HIF-1α, and Nrf2 decreased in all IHH groups compared with the AHH group. A biphasic pattern was observed as IHH sessions increased from 14 to 21 or 28. Where the IHH treatment for more than 14 sessions caused a decrease in endogenous antioxidants, but the response to hypoxia and oxidative stress increased. Our findings presented the molecular alterations of cardiac rats exposed to intermittent hypobaric hypoxia
Antimicrobial Potential of an Actinomycete Gordonia terrae JSN1.9-Derived Orange Pigment Extract
Get PDFActinomycetes are known to be a source of natural products and drugs. Gordonia terrae, an actinomycete pigment producer, shows potential in producing pigment with antimicrobial activity. This study aims to determine the antimicrobial activity of the active pigment fraction produced by the actinomycete G. terrae, assess the effects of the active pigment fraction on microbial cells, and identify the types of compounds present in the fraction. The pigment extract exhibited antimicrobial activity against Gram-positive bacteria and fungi. Specifically, it showed activity against Bacillus subtilis ATCC 6633, Staphylococcus aureus ATCC 25293, and Candida albicans ATCC 10231. Furthermore, the study evaluated the antimicrobial activities of the active fractions, revealed the active fraction had better antimicrobial activity than the crude extract. Scanning electron microscopy (SEM) confirmed that the active fraction of the pigment causes damage to B. subtilis ATCC 6633 cells, inhibits the formation of filaments in C. albicans ATCC 10231, and alters the normal shape of the cells. LC-MS/MS results showed that the active fraction contained several compounds known for their antimicrobial activity. Among the dominant compounds identified were cholestyramine, aminopregnane, and sphinganine. Thus, this study demonstrated that the orange pigment extract derived from G. terrae JSN1.9 exhibits promising antimicrobial activity
α-Mangostin Effectively Inhibits Chikungunya Virus Replication in HepG2 Cells
Get PDFChikungunya virus (CHIKV) is an arthropod-transmitted Alphavirus endemic to countries in Africa and Asia, including Indonesia, which causes debilitating arthralgia which can last several years. The rapid spread of CHIKV to new areas makes the discovery of antiviral agents a high priority. α-mangostin is a xanthone from mangosteen (Garcinia mangostana) pericarp and has antiviral activity against Hepatitis C and Dengue viruses. We investigated the antiviral activity of α-mangostin against CHIKV in HepG2 cells in pre-, post- and combination treatments compared to the common antiviral medicine ribavirin, as well their cytotoxicity. Our results show dose-responsive reductions in viral titer in all treatment regimes, with post- and combination treatments being more effective than pre-treatment only (IC50 = 7.79, 5.99 and 6.39 µM, respectively), but with poor specificity (SI = 1.39, 1.81 and 1.70, respectively) compared to ribavirin. Neither compound showed a direct virucidal effect. These results suggest α-mangostin effectively inhibits CHIKV replication in this cell line
Diet Composition and Overlap of Two Mesocarnivores, Leopard Cat (Prionailurus bengalensis) and Javan Mongoose (Urva javanica), in Java, Indonesia
Get PDFDietary study of carnivores has garnered a great deal of attention for a very long time since it provides information for comprehending ecological processes and tracking the economic effects of animals on food production. Few studies reported alternative prey that is detrimental to food production, such as rodents and insects, in addition to the numerous studies on livestock predation. Therefore, this study aims to provide information on the diet composition and overlap of two mesocarnivore species, Javan mongoose (Urva javanica) and leopard cat (Prionailurus bengalensis), in Java, Indonesia. The macroscopic observation technique was applied for identifying food remnants found in the 90 feces of the mongoose and 100 feces of the cat collected in 2018. Twenty three and 21 taxa of prey were found in the leopard and Javan mongoose feces. Rodentia was the most frequent taxa found in the feces of both species, followed by Galliformes. Insects comprised the majority of diet items but at low frequencies. Two mesocarnivores were specialists (Levin’s index of leopard cat: 0.08; Javan mongoose: 0.26) with fairly high diet overlap (Pianka’s index = 0.78). The results provided compelling evidence of the positive and negative impacts of mesocarnivores on food production in Java