Journal of Tropical Biodiversity and Biotechnology
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The First Record of an Hourglass Toad (Leptophryne borbonica) in The Core Zone of Bromo Tengger Semeru National Park and Its Ecological Aspects
Get PDFLeptophryne borbonica is an amphibian species known for its sensitivity to environmental changes. Within the expansive Bromo Tengger Semeru National Park (TNBTS), new occurrences of L. borbonica have been discovered for the second time in another region of TNBTS (core area in Ireng-Ireng Block, Lumajang). This research provides the newest finding of L. borbonica and insights into the habitat assessment and potential food preferences of L. borbonica within TNBTS. The methodology involved the examination of morphology and meristics in L. borbonica. Habitat assessment and potential food indicated stable values. However, continued vigilance is essential due to vulnerability to volcanic threats
Praxelis (Asteraceae: Eupatorieae), A Newly Naturalised Genus for Kalimantan and Sumatra, Indonesia
Get PDFThe southern American genus Praxelis Cass. has 18 species. In Singapore and Indonesia, notably Java, P. clematidea R.M.King & H.Rob. has naturalised. The first record in Indonesia was in Bogor in 2018, although it is unverified elsewhere. Praxelis clematidea was found in Bangka, Belitung, Jambi, Lampung, and Palangka Raya during our exploratory field research in 2020–2023. The naturalised populations proliferate in roadsides, ditches, open spaces, and disturbed areas. It thrives in a small swampy peat environment in Palangka Raya. Praxelis clematidea has been found outside Java, suggesting it could become an invasive alien species in Kalimantan and Sumatra
The Growth Response of Rendeu (Staurogyne elongata (Neese) Kuntze) to Shoot Pruning and Its Propagation by Shoot Cutting
Get PDFRendeu (Staurogyne elongata (Neese) Kuntze) is a native Indonesian plant used as food and traditional medicine in the daily life of the people residing around Gunung Halimun-Salak National Park. Due to the potential source of herbal-based medicines and traditional food in the long-run purposes, the proper method of its propagation is required, so that Rendeu can be conserved and utilised sustainably. This study employed two research designs. First, a completely randomized design with pruning and IAA (indole-3 acetic acid) treatment was used for seedling growths. Second, plant propagation applied a factorial randomized block design: planting media types and plant growth regulator (PGR) (rootone F) treatment. Observation included the number of buds, number of leaves, number of flowers, plant biomass, root length, and relative chlorophyll content using the SPAD tool. The data were analysed using ANOVA (SPSS ver. 17.0), followed by Pearson correlation analysis. The results showed that applying IAA and leaf pruning could increase the number of buds, the number of leaves and the fresh weight of S. elongata plants compared to the control plant. The addition of rootone increased the growth of Rendeu shoot cuttings, shown in all growth parameters and chlorophyll content. Humus was the best media for Rendeu’s growth among all planting medium. Planting media affected the increase in the number of leaves and the number of buds of S. elongata significantly. The interaction of planting media and PGR somewhat influenced root length and total leaf chlorophyll. The growth and production of S. elongata increased with the time of planting.
Plant Growth Promoting Endophytic Microorganisms from Orchids for A Sustainable Agriculture
Get PDFConventional agriculture practice has heavily relied on chemical fertilizers to increase crop yield. However, long-term application of chemical fertilizers carries tremendous negative impact on the environment and is unsustainable. Hence, the search for an alternative source of fertilizers is required. Orchids are flowers and can be found in tropical countries. The growth and development of orchids are closely tied to the presence of plant growth promoting endophytic microorganisms (PGPM). PGPM harbours various beneficial traits such as potassium and phosphorus solubilization and indole acetic acid and siderophore production which enhance and support plant growth and development. This review article showed that PGPM isolated from orchids could be utilized in conventional agriculture to reduce dependency on chemical fertilizer.
Nannoplankton Biostratigraphy from Banggai-Sula Basin, Central Sulawesi
Get PDFThe nannoplankton research was conducted in the MH-2 well, Banggai-Sula Basin, Central Sulawesi. Thirty-four ditch-cutting samples were utilized to observe the Minahaki, Kintom, and Biak Formations. Age determination was carried out using biostratigraphy method and standard procedure for first and last occurrence of nannoplankton biodatum and had an absolute age, widely known as a zone indicator. This study aims to determine the age and nannoplankton biozonation of each geological formation in Banggai-Sula Basin. Based on the biostratigraphic analysis, 39 species from 14 genera with abundance frequencies ranging from rare to abundant were found in the MH-2 well. In this study, new results of the age of Banggai-Sula Basin areMiddle Miocene – Early Middle Pliocene (13,706 – 3,727 Ma), and can identify into six calcareous nannoplankton zones that are more detailed than previous researchers, Discoaster signus zone (NN5), Discoaster exilis zone (NN6-NN7), Discoaster berggrenii zone (NN11), Ceratolithus acustus zone (NN12), Helicosphaera sellii zone (NN13-NN15), and the Discoaster tamalis zone (NN16). Biostratigraphic data also shows new information for the first time, the absence of three zones from zone NN8 to zone NN10. This result indicates an unconformity in the Late Miocene age (10.606–8.20 Ma).
Safety Assessment of Bacillus subtilis G8 Isolated from Natto for Food Application
Get PDFVarious bacteria are widely used as food-fermenting agents, including Lactobacillus, Bifidobacterium, and Bacillus. Despite they are generally recognized as safe to be consumed by humans, those bacteria could potentially cause antibiotic resistance as they could acquire and transfer antibiotic resistance genes from or to other microbes within the human gastrointestinal tract. Profiling antibiotic resistance pattern in those bacteria is therefore important to control the spread of antibiotic resistance. In this study, antibiotic resistance profile of Bacillus subtilis G8 was assessed. B. subtilis G8 had been isolated from commercialised Japanese natto in Indonesia and had been previously reported for its fibrinolytic characteristics. The antibiotic resistance phenotype and genotype of B. subtilis G8 were assessed through the Kirby-Bauer disk diffusion method and whole-genome analysis, respectively. B. subtilis G8 exhibited resistance towards Oxacillin, Lincomycin and Tiamulin-Lefamulin. The bioinformatics analysis indicated several responsible genes mediating those resistance, i.e., ybxI (for Oxacillin), lmrB (for Lincomycin) and vmlR (for Lincomycin and Tiamulin-Lefamulin). All identified genes were found in the chromosomal DNA. Further analysis found no mobile genetic elements within the genome, therefore reducing a risk of resistance gene transfer via plasmid and subsequently supporting safety profile of B. subtilis G8 in food fermentation usage
Diversity and Phenetic Relationship of Mountain Papaya (Vasconcellea Pubescens) in Dieng Plateau Based on Morphological Marker
Get PDFVasconcellea pubescens A. DC., commonly referred to as mountain papaya, belongs to the Caricaceae family and is native to the Andean highlands. In Indonesia, mountain papaya can be found on the Dieng Plateau and has become one of the typical processed products from the Dieng area. The aim of the study is to explore the diversity and phenetic relationship of mountain papaya from the Dieng Plateau based on morphological markers. This study is important to provide information in guiding future conservation efforts. 18 samples were collected from three areas with different altitudes in the Dieng Plateau. In addition, it proved valuable results by elucidating patterns of variation, enabling the identification of distinct groups. A total of 18 samples were collected from three areas with varying altitudes in the Dieng Plateau. Morphological analysis used 22 characters with The Clustering Analysis Method, Principal Component Analysis (PCA), and Diversity Analysis using Multivariate Statistical Package (MVSP) software version 3.1A. The results of cluster analysis showed that mountain papaya accessions were grouped into two main clusters and five sub-clusters. Cluster grouping based on sex distribution characters, flower stalk length, and inflorescence density; there is no grouping based on geographical location or altitude. The Shannon's Index Value (H') for mountain papaya shows moderate phenetic diversity. This suggests that the mountain papaya community remains stable within its substrate and its environmental parameters.
Daily Activity and Honey Production Patterns of Tetragonula laeviceps Smith (Hymenoptera: Apidae) During the Wet and Dry Seasons
Get PDFHoney production by stingless bees is closely related to the foraging activities of worker bees, particularly nectar foraging. The urgency of this study stems from the community's need for adequate understanding and information on honey production which can vary due to various factors, such as forage and season. The purpose of this study was to determine the extent to which foraging activity affects the amount of honey produced by T. laeviceps during the rainy and dry seasons. The focal sampling method was used to observe foraging behaviour and the acetolysis method was used to observe pollen. The abiotic factors were measured through direct observation. Honey production was observed as a result of foraging behaviour and variations in abiotic factors. In SPSS v27 software, data from foraging behaviour observations were analysed using one-way ANOVA followed by Tukey's test with 95% confidence level and interpreted in tables and figures. Multiple linear regressions and Pearson’s correlations were used to test the relationship between abiotic variables and bee return to hive behaviour. All honey volume data were collected, averaged, and evaluated using bar charts. Based on these results, the amount of honey produced by T. laevicepsin the dry season was significantly higher than that produced during the wet season. This was because the number of bees actively foraging was also higher in the dry season (June-August) which was strongly influenced by temperature and light intensity (p > 0.05). In addition, the number of flowering plants available for harvest during the dry season was higher than that during the rainy season. The results of this study can be used as a reference by beekeepers to determine the appropriate time to harvest honey. Information on the types of forage plants identified in this study can provide information on bee preferences in making choices related to forage plants
Sequence-Structure Comparative and Network-Based Prediction of Drought Gene Candidate Regulator in Elaeis guineensis
Get PDFDrought poses a significant threat to global food security, particularly impacting crops like oil palm. Selecting genes for genome editing to enhance drought tolerance presents formidable challenges. To ensure that the target gene is chosen correctly and results in the desired character, a pilot study is necessary to determine the target gene for knockout. Two genes drought-related, AtBRL3 and AtOST2, were scrutinized in this context. Aligned with the Elaeis guineensis genome, their neighbouring proteins and gene ontology were analysed to identify potential targets for genome editing. AtBRL3, identified as BRL1 (XP_010913986.1) in E. guineensis, exhibited 58.48% identity and 100% coverage. It interacts with 12 nodes, including BIR1, BRI1, and AT2G20050, crucial for signalling pathways and cellular responses. Molecular function analysis revealed kinase activity. AtOST2 showed high similarity to plasma membrane ATPase/HA1 (XP_010913679.1) in E. guineensis, with 87.46% identity and 100% query cover. It correlated with 14 genes associated with ABA stimulus, stomatal movement, and hormone response. EgBRL1 and EgHA1, resembling AtBRL3 and AtOST2, respectively, emerge as promising targets for developing drought-tolerant oil palm cultivars through gene editing. Nonetheless, further validation through in vitro gRNA target selection and in vivo conversion of OST2/BRL3-containing plasmids in oil palm calluses is indispensable to demonstrate their efficacy in conferring novel drought resistance traits.
Scanning Electron Microscopy Analysis of Tea’s Embryo Axis Explant Cultured on Murashige and Skoog Medium Containing 2,4-Dichlorophenoxyacetic acid
Get PDFCamellia sinensis L. is an important crop in Indonesia as healthy beverage that contains several secondary metabolism compounds, such as polyphenols and catechins. Tissue culture including somatic embryogenesis and organogenesis has been used for propagating plant for various needs. In this present short-communication, scanning electron microscopic (SEM) analysis of tea was conducted and discussed. This study aimed to investigate surface ultrastructure of TRI2025 embryo axis tea clone cultured on Murashige and Skoog (MS) medium containing 2,4-Dichlorophenoxyacetic acid (2,4-D). The results revealed two different forms of explant’s development, i.e. somatic embryo and transitional form between somatic embryogenesis and organogenesis; or called by “Globular-like Structure” (GLS). Surface ultrastructure analysis of somatic embryo and GLS revealed respectively many stages of somatic embryo development i.e. globular, torpedo, and cotyledon stage, and leaf development form GLS regeneration.