Journal of Tropical Biodiversity and Biotechnology
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Spatial Distribution of Cedrela Odorata Smaller Trees Affects Forest Regeneration in Exotic Tree Plantations in Central Côte d’Ivoire
Get PDFCedrela odorata L. was introduced as a possible forest restauration species in classified forests at Côte d’Ivoire. Because of its demonstrated invasive behavior in other tropical forests, this study aimed to assess the impact of Cedrela odorata on the regeneration of spontaneous plant species in tree plantations. On the base of Cedrela odorata larger tree densities, two types of forest plantation were considered: Type I (240 stems/ha) and Type II (176 stems/ha). In these plantations, plots with 0.25 ha were chosen to locate each tree with dbh ≥ 2.5 cm, in an orthonormal reference. The tree density, the basal area, the species richness, the Shannon diversity index and the rank-abundance curves were determined considering smaller and larger trees. The horizontal spatial arrangement and Ripley’s K function were performed to understand the spatial relationship between Cedrela odorata smaller trees and those of spontaneous species. The results shown lower spontaneous plant species richness (15-20 species) and diversity (1.15 - 1.43); the dominance of Cedrela odorata smaller trees (43.02 – 62.95 % of all stems). The Cedrela odorata smaller trees and those of other species have dependent spatial distributions; expressed by a spatial repulsion between the two groups up to a distance of 18 m in the most densified forest plantation. This repulsion was related to an aggregated distribution of Cedrela odorata smaller trees in plantation with higher tree density. The study suggests a 170-stems/ha (or lower) of Cedrela odorata planting density for biodiversity establishment improvement outcomes in forest plantations.
The Evaluation of the Combination of Additives and Fungal Dyes to Produce Color for Textile Painting
Get PDFFungal dyes are an eco-friendly alternative to synthetic dye. This study aims to evaluate additives to dye, using mixed fungi, to paint the picture on cloth. In the present study, the cloth was painted with mixed Aspergillus and Paecilomyces dye. The mixed fungi were grown on a mineral salt glucose medium. Five tests were conducted to evaluate additives to dye from mixed fungi that could be used to paint pictures on cloths to evaluate the effect of additives, a combination of additives producing tidy colors and other additives, the dye pH, mordant, and a variety of different mordants and the dye pH on color tidiness and hue. The additives used were alkali, acid, salts, glycerine, and urea. The Royal Horticultural Society (RHS) color chart was used to measure the color of filtrate and range developed on the painted color on the cloth. The results showed that the mixture of vinegar or lemon as additives and the dye pH of 3 produced tidy colors. The mordant application had a more significant effect on the color that appears than pH treatment. Colors formed on images can add variations to textile painting
Maturation of Female Yellow Rasbora (Rasbora Lateristriata Bleeker, 1854) Using Oodev at Different Doses in Feed
Get PDFThe current high demand for Yellow rasbora (Rasbora lateristriata) is not supported by the availability of captured Yellow rasbora in nature. Aquaculture is the most rational way of utilizing biological natural resources. In intensive aquaculture, it is necessary to optimize all processes that occur in aquaculture, including hatchery. However, the common problem that often happens in hatchery activities is spawning which depends on the season. The hormonal manipulation technique is an appropriate way to stimulate gonadal maturation. Oodev is a hormonal combination of pregnant mare serum gonadotropin and anti-dopamine to stimulate gonadal maturation. The purpose of this study was to determine the effectiveness of using the Oodev with different doses in feed to accelerate gonad maturation of female Yellow rasbora. The study was carried out with four treatments and three replications in 21 days with different doses of Oodev, such as; A (Feed without Oodev), B (0.5 mL/kg feed), C (1 mL/kg feed) and D (2 mL/kg feed). The parameters observed in this study were gonad maturity level, histological structure of ovary, gonadosomatic index, fecundity, and diameter of eggs. The results showed that the dose of Oodev at 1.0 mL/kg feed was an effective dose to optimize the gonad maturity of female Yellow rasbora. This is proven by the highest results shown on all parameters, such as; the maturity level in the IV phase, histological structure of the ovary which showed the dominance of the oocyte maturation phase, gonadosomatic index of 14.014%, the fecundity of 721 eggs, and egg diameter of 0.865 mm. In conclusion, using Oodev in feed at a dose of 1.0 ml/kg of feed for 21 days is an effective dose to optimize the maturation of female Yellow rasbora.
Relationships Among Biomass, Carbon, and Microfibril Angle in Young Shorea spp. (Dipterocarpaceae) in Indonesia
Get PDFIndonesia, particularly the island of Java, is dominated by a number of Shorea tree species (Dipterocarpaceae). Trees of the genus have been utilized for various practices, and they play a fundamental role in managing the stability of tropical forests. This study was carried out to understand the relationships between biomass and microfibril angle in Shorea spp. growing in West Java, where Shorea spp., are abundant. A total of 35 young trees belonging to 5 species were studied. The average age of these trees was 9 years, but in general there was a wide variation in tree diameter and total height. On average, biomass was the highest in S. leprosura and the lowest in S. palembanica. The lowest average microfibril angles (MFAs) were found in S. leprosura and S. mecistopteryx. The regression relationship between biomass and diameter was strong with an R2 value of 0.85, while the strength of the relationship between MFA and diameter was weaker (R2 = 0.195). In general, the MFA degree decreased with increased biomass accumulation Shorea species, which affects tree resistance to environmental variables and competitiveness in Indonesian tropical forests.
Nutritional Contents and Bioactive Compounds among Several Variants of Dolichos lablab: Fundamental Facts for Functional Food Development
Get PDFTo date, the data describing various nutritional and secondary metabolites content of Lablab beans is incomplete. Therefore, this study evaluated the nutritional value, secondary metabolites, and antioxidant activity of three different variants of Lablab beans, i.e., brown, black, and cream beans. The results showed that the brown Lablab beans had outperformed other variants according to their nutritional value and flavonoid content with outstanding DPPH scavenging activity. However, the black beans also showed good bioactive contents through their total phenolic percentage with decent reducing activity via the FRAP assay. Those who are keen in developing functional food from Lablab beans should consider this data as a reference.
The Diversity of Scarabaeid Beetles (Scarabaeidae: Coleoptera) in The Lowland Rainforest Ecosystem of Sorong Nature Tourism Park, West Papua, Indonesia
Get PDFScarabaeid beetles have an essential role in forest ecosystems, such as nutrient recycling, seed dispersal, forest regeneration, controlling parasite, and reducing carbon emissions. Until now, there has been no publication on scarabaeid beetle diversity in the lowland rainforest ecosystem of Papua, Indonesia. This study aims to measure the diversity of scarabaeid beetles in the lowland rainforest ecosystem of Sorong Nature Tourisme Park (SNTP), West Papua, Indonesia. Determination of study sites used in this study was using the purposive sampling method in three habitat types i.e., rehabilitation zone, conservation zone, and protection zone using baited dung traps (type A, B, and C dung traps), light trap, and active sampling. The fresh cow and human feces baits were used for dung traps that was replaced every 24 hours (68 repetitions for 68 days) in each habitat. Results showed a total of 30 individuals belonging to 13 species of scarabaeid beetles were collected. Onthophagus has the highest species richness (5 species) and the low species richness were Aphodius sp., Anomala sp., and Adoretus sp. (1 species). The protection zone has the highest diversity index (H’=2.09), followed by the conservation zone (H’=2), and rehabilitation zone (H’=0.5). Based on trap type, dung trap collected the most beetle species (9 species), followed by light trap (6 species), and active sampling (2 species). Based on Pearson correlation, soil pH significantly correlated with beetle abundance. This study was the first report of scarabaeid beetles in the West Papua, Indonesia
In Silico Approach for DNA Barcoding using Phylogenetic Analysis of Coelogyne spp. based on the matK, rpoC1, rbcL and nrDNA Markers
Get PDFIn silico biology is considered as an effective and applicable approach to initiate various research, such as biodiversity taxonomical conservation. Phylogenetic analysis using in silico taxonomy method for orchid species can provide data on genetic diversity and evolutionary relationships. One particular method that can be used to evaluate specific targets of gene loci in the taxonomic study is DNA barcoding. This research was conducted to determine the specific target locus gene using matK, rbcL, rpoC1, and nrDNA markers for DNA barcoding of the Coelogyne genus with in silico approach using phylogenetic analysis. All marker sequences were collected from the NCBI website and analysed using several softwares and methods, namely Clustal X for sample sequence alignment and MEGA 11 for phylogenetic tree construction and analysis. The results showed that the gene locus in Coelogyne recommended was the nrDNA gene locus. Phylogenetic analysis revealed that the use of the nrDNA gene locus was able to separate 17 Coelogyne species with two outgroup species, namely Cymbidium and Vanilla, then followed with ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) while the other gene loci, namely maturase K (matK) and polymerase beta' subunit (rpoC1) provided a visual phylogenetic tree in which the two outgroup species entered into the same clade as the Coelogyne species. Thus, the results of this study can be used as a reference to support the Coelogyne breeding and conservation program.
Notes on The Current Distribution and Abundance of The Frog Genus Leptophryne spp. (Anura: Bufonidae) in Gede Pangrango National Park
Get PDFWe reported the current distribution of Leptophryne spp. in Gede Pangrango National Park. Leptophryne cruentata was recorded in Cibodas (Cikundul waterfall and Goa Lalay), Selabintana (Cibeureum Waterfall), and Goalpara (Rasta Waterfall), whereas Leptophryne borbonica was only reported from a creek at lowland forest of Bodogol. Goa Lalay and Rasta waterfall were explicitly reported as new distribution locations of Leptophryne cruentata. It was strictly found at a higher elevation usually within reach of waterfalls that generate substantial background noise, except in Cibodas in which Leptophryne cruentata can also be found in two noisy creeks located at a fairly great distance from waterfalls (100 – 170 meters).
Assessing Indigenous Soil Ureolytic Bacteria as Potential Agents for Soil Stabilization
Get PDFMicrobially induced carbonate precipitation by ureolysis is a biomineralization process that has been adapted by various microorganisms in different natural environments. This widespread natural phenomenon can be employed in numerous civil engineering and soil stabilization applications. In the present study, the potential of indigenous soil urease-producing bacteria as potential agents for soil stabilization methods was investigated. Assessment of the eight active urease-producing bacterial species isolated from the farm soil samples has demonstrated that all the isolates were Gram-positive rod-shaped bacteria with promising characteristics such as the formation of endospore which is essential for bacterial survival in harsh conditions within the soil environment. The pH profile and growth profile of the isolates were studied and urease activity was measured by the phenol hypochlorite assay method. Two isolates designated isolate O6w and isolate O3a were selected based on the highest urease activity recorded at 665 U/mL and 620 U/mL, respectively, and they were able to increase and sustain alkaline culture condition (pH 8.71 ± 0.01 and 8.55 ± 0.01) which was suitable for CaCO3 precipitation. The isolates were identified based on 16S ribosomal RNA sequencing to be Bacillus cereus (O6w) and Bacillus paramycoides (O3a). This current study suggested that indigenous soil ureolytic bacteria are potential raw material for the biotreatment of soils stability.
Genetic Variation of Butternut Squash (Cucurbita moschata Duchesne) based on Inter-Simple Sequence Repeat
Get PDFButternut squash (Cucurbita moschata) is a Cucurbitaceae plant that has been widely cultivated in Indonesia. Butternut squash is known to have various cultivars. A new cultivar introduced by the Faculty of Biology UGM is named ‘Citra Laga’ which is expected to be able to compete with the imported cultivars. The number of cultivars within a species may indicate genetic variation. This research was conducted to observe genetic variation and the phenetic relationship between ‘Citra Laga’ and the imported butternut squash cultivars based on the molecular marker ISSR. The ISSR analysis between ‘Citra Laga’ and the imported cultivars showed an average low polymorphism rate by 18.61% with a high similarity percentage of 83.7%. Thus, it can be said that the genetic variation is low and ‘Citra Laga’ is not genetically much different from the imported cultivars.