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Panorama et guide d’aide à la selection des methodes d’evaluation environnementale – Grille d’analyse
No full textGrille d'analyse des méthodes en lien avec le panorama : https://librairie.ademe.fr/economie-circulaire-et-dechets/8525-panorama-et-guide-d-aide-a-la-selection-des-methodes-d-evaluation-environnementale.htm
Stochasticity shape microbial communities in high-altitude lakes whereas species selection and homogenization dispersal are more important in lowland lakes: case of benthic diatoms in alpine lakes. Supplementary data
No full textthese are the supplementary data of the paper "Stochasticity shape microbial communities in high-altitude lakes whereas species selection and homogenization dispersal are more important in lowland lakes: case of benthic diatoms in alpine lakes.
Replication Data for : Electroporation of spheroids using an electric gradient : a tool to study intensity-dependent permeabilization
No full textThese experimental and numerical (finite element modeling) data are associated to the Paper "Electroporation of spheroids using an electric gradient : a tool to study intensity-dependent permeabilization".
It contains :
1) stacks of fluorescent images (FDA and PI channel) of the spheroids presented in the paper [Software : Zen 3.8].
2) Z-stacks of confocal images of 4 spheroids for 6 different applied Electric Fields [Software : LAS AF]
3) A Comsol file containing numerical model used for evaluation of the electric field (Comsol 6.2)
Stacks of images are readable with ImageJ (free stoftware
DMP DiaPhen v1
No full textData management plan for data generated on the DiaPhen field phenotyping platfor
Estimation of Physical and Electrical Properties of Various REBCO Tapes for Construction of Very-High-Field REBCO Magnet
No full textThis dataset supports the publication : Estimation of Physical and Electrical Properties of Various REBCO Tapes for Construction of Very-High-Field REBCO Magnet.
The physical and electrical properties of four recent REBCO CC were assessed: 1) THEVA; 2) Shanghai Supercond. Technology; 3) Faraday Factory Japan; and 4) Fujikura. For estimating their physical properties, the delamination strength of
each tape was checked by removing a polyimide ribbon sticked bon the tape and by cutting the tape after pre-tinning. Their windability and the uniformity of their thickness were also binvestigated through our metal-as-insulation winding process.
For evaluating their electrical properties, their critical current was measured at 4.2 K under various external magnetic fields perpendicular to their ab-plane. Joint samples of each tape were fabricated and tested in a bath of liquid nitrogen at 77 K in self-field. The results are described in this paper for the four tapes
Automated image acquisition and quantification of leaf lesion from plant fungal pathogen
No full textThis workflow integrates a Bash script to monitor automated image acquisition, a series of Jupyter Notebooks for dataset preparation, a training script for model development, a prediction script using the trained model, and post-processing tools for downstream analysis. The pipeline was designed to phenotype plant disease symptoms through the quantification of necrosis caused by Sclerotinia sclerotiorum on Brassica napus (oilseed rape) leaves using deep learning methods
Bilan du volet : Accompagnement des utilisateurs
No full textCe rapport a pour objectif de :
Présenter et analyser les activités conduites pour accompagner les utilisateurs dans le projet Explore2,
Garder une trace claire des méthodes, des outils et des actions mises en oeuvre pour assurer une collaboration efficace entre les chercheurs et les utilisateurs finaux,
Fournir un cadre reproductible pour faciliter l'intégration des utilisateurs finaux dans des projets scientifiques futurs, en mettant en avant les bonnes pratiques et les leçons apprises.
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Data and programs used for the article "Reputation shortcoming in academic publishing"
No full textThis set of data and programs were used to analyze the relationship between authors’ ties with professional editors and the publications of these authors in the editors’ journals. We assessed whether this relationship was related to three aspects of authors’ reputation in the eyes of the editor: a past collaboration with the editor, an affiliation to one of the editor’s former research affiliations, and whether the author had already published in the journal of the editor. We collected all published articles recorded in the PubMed database up to December 2020; job offers for editorial positions at Nature journals between December 2020 and December 2021 published on the Nature website; editors' scientific and editorial experiences from LinkedIn complemented by Google searches. Data extraction was built of three steps to identify the past collaborators of editors, whether these collaborators published in the editor’s journal before or after the editor’s appointment at the journal, and whether an author had a track record in the journal at a given date. Statistical analyses were performed with the output of these steps. The study was complemented by the analysis of job offers for editorial positions issued by the editors’ journal and by retracted publications in the editors' journal.
Content description:
The file entitled "Neveu et al additional methods.pdf" provides additional details of the method described in the main text of the article and the Supplementary online published alongside the article.
The file entitled "Neveu et al additional results.pdf" provides results of the robustness analyses. These analyses aimed at checking that the results reported in the main text and the Supplementary online of the article were not biased by the parameters mentioned in the Method section of the article.
The compressed file "DataAndPrograms.zip" contains all programs used to extract the data used in the analyses of the article.
These programs are in the folder "Preprocessing of data". Inside this folder, the folders "1st level", "2nd Level", "3rd level" and "4th level" contain programs which must be run in the order suggested by the names of the folders. In each of these folders, .sh programs are for running the Matlab program of the folder on grid computing. The Matlab programs which are in the "Functions" folder are all the functions which are called by the programs which are in the other folders of the folder "Preprocessing of data". The Matlab programs which are in the folder "Output analysis" are all the functions which are used once the four levels have been run. The Matlab programs which are in the "Tools" folder are a set of functions used for the management of the output of each of the four levels especially when the grid computation crashed.
Data are in the folders "Raw data" and "Extracted data". Data in the "Extracted data" are the output of the aforementioned four levels of the preprocessing.
The programs used for the statistical analyses are in the folder "Statistical analyses". They are sorted according to the sets of results reported in the article. This folder includes Excel files of the data used in the linear mixed models used. The programs are R and Matlab ones. The programs of the folder "Robustness analyses" are for the robustness analyses of the results obtained with programs of the "Statistical analyses" folder. The folder "Supplementary analyses" contains data and programs which were used to run analyses. Results of these analyses are reported in the Supplementary materials of the article.
The compressed file “Supplementary prints of websites referenced in the article.zip” contains screenshots of the websites cited in the main text of the article. These screenshots were renewed in 2024. The first version is already included in the file “Prints of websites referenced in the article.zip”.<br
Processed netCDF files of Maison en Terre data - Before frequency transformation
No full textProcessed netCDF files for Maison en Terre data, obtained after processing the workflow found in Data_Production.
Contains all 52 distincts measurments, with outliers removed.
All 52 measurements include, in seperated files:
Interior CO₂ (north and south), CO₂ (PPM)
Micro-particles (µg/m3)
Interior temperature (north and south), percieved temperature and temperature (°C)
Interior humidity (north and south), absolute and relative humidity (%)
Pyranometer measurements (W/m², kWh/m²)
Azimuth and solar elevation
Weather station temperature and sensor state (°C, boolean)
Front, left, right and maximum light intensity (lux)
Wind speed (m/s)
Rain
Convectors, light, outlets and ventilation energy consumption
Convectors, light, outlets and ventilation power
Volatile Organic Compounds (PPM)
Roof, south walls and walls temperature (°C)
Can be used to continue the workflow with the 5min transformation file. (Workflow for transforming frequency to 5min per 5min)
Can also be used to compare whole datasets to own data or collected data
ECOALIM Alimentation animale
No full textCe jeu de données regroupe des outils destinés aux fabricants d’aliments et à la recherche/développement concernant les impacts environnementaux des intrants alimentaires des élevages.
Ces derniers ont été produits dans le cadre d’un projet EcoAlim (2013-2016) financé par le CASDAR et l’ADEME. Ces travaux s’insèrent dans le programme AGRIBALYSE qui fournit des références environnementales pour les produits agricoles et alimentaires français. Ecoalim constitue le volet nutrition animale de la base Agribalyse