Phaidra - University of Veterinary Medicine Vienna
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Encephalitozoon cuniculi Infection in Rabbits (Oryctolagus cuniculus): Data from an International Survey of Exotic and Small Animal Veterinarians
No full textIn 2022-2023, the first survey of clinicians regarding Encephalitozoon cuniculi infection of rabbits was undertaken. The purpose was to assess the current worldwide knowledge of clinicians regarding influence of breed and age, clinical presentations, use of various diagnostic tools, and treatment regimens and to explore how responses may differ by geographic location. Identifying mostly as exotic animal clinicians, 339 respondents participated, with nearly half from the United States and the remainder from 35 other countries. Neurological signs were most consistently reported as associated with Encephalitozoon cuniculi and the most recurrent clinical case presentation. Other responses showed differences by geographic location. For example, age predilection for disease varied, with 71.1% of international respondents indicating that infection was more common in young rabbits versus 28.9% who suggested it was more frequent in older rabbits. This was significantly different (p = 0.001) from the information from respondents from the United States, where 48.0% indicated that younger rabbits had an increased incidence versus 52.0% who indicated that older age increased occurrence. While some differences may be related to the practice composition and the training level of respondents, many responses were in alignment with the existing literature. Future inquiries should focus more on these discrepancies to aid in generating guidelines for the diagnosis and treatment of this infectious disease
Integrated multi-omics identifies pathways governing interspecies interaction between A. fumigatus and K. pneumoniae
No full textPolymicrobial co- and superinfections involving bacterial and fungal pathogens pose serious challenges for diagnosis and therapy, and are associated with elevated morbidity and mortality. However, the metabolic dynamics of bacterial-fungal interactions (BFI) and the resulting impact on disease outcome remain largely unknown. The fungus Aspergillus fumigatus and the bacterium Klebsiella pneumoniae are clinically important pathogens sharing common niches in the human body, especially in the lower respiratory tract. We have exploited an integrated multi-omics approach to unravel the complex and multifaceted processes implicated in the interspecies communication involving these pathogens in mixed biofilms. In this setting, A. fumigatus responds to the bacterial challenge by rewiring its metabolism, attenuating the translational machineries, and by connecting secondary with primary metabolism, while K. pneumoniae maintains its central metabolism and translation activity. The flexibility in the metabolism of A. fumigatus and the ability to quickly adapt to the changing microenvironment mediated by the bacteria highlight new possibilities for studying the impact of cross-communication between competing interaction partners. The data underscore the complexity governing the dynamics underlying BFI, such as pronounced metabolic changes mounted in A. fumigatus interacting with K. pneumoniae. Our findings identify candidate biomarkers potentially exploitable for improved clinical management of BFI
On your terms or mine: pigs\u27 response to imposed gentle tactile contact vs. free form interaction with a familiar human
No full textPositive human-animal interactions (HAIs) can be intrinsically rewarding and facilitate positive human-animal relationships. However, HAI paradigms vary across studies, and the influence of different interaction paradigms on the animal\u27s response has been overlooked. We compared the behavioural responses of pigs (n = 28) individually tested with two types of gentle tactile interactions with a familiar human: \u27free form (FF)\u27 where the pig could voluntarily approach and interact as they normally would, and \u27imposed contact (IC)\u27 where the human imposed tactile contact on the pig according to a standardised protocol. Pigs did not differ in their level of engagement with the human between the two types of interactions. However, they differed in their behaviour as they explored the pen more during the FF test, while they emitted more low-pitched vocalisations (grunts) during the IC test. These differences can likely be imputed to the IC test differing to the pigs\u27 habituation to human contact, which could have evoked greater attention to the human or triggered frustration due to violation of expectation. These findings highlight the influence of the predictability of the interaction or level of agency provided to the animal in HAI tests and relation to their previous experience of interacting
The effect of aldehyde fixatives, alcohol-based fixatives, and fixatives combining denaturation and crosslinking on histomorphological, histochemical, and molecular genetic studies during short-term and long-term fixation: a comprehensive analysis
No full textThe choice of fixative solution has a significant impact on the quality of tissue processing and the results of ancillary pathological studies. The present study aimed to compare the effect of different fixatives and fixative times on routinely used histopathological staining methods and molecular genetic studies in porcine endometrium. Haematoxylin and eosin staining was used to evaluate cell morphology, while G & ouml;m & ouml;ri and orcein staining were selected for histochemical studies; molecular genetic studies were represented by polymerase chain reaction. Tissue samples were fixed in formalin, Bouin\u27s fluid, methacarn, Greenfix, and Antigenfix for 1.5; 8.5; 15.5; 29.5; 64.5; 189.5; 249.5; 309.5; 369.5 days (only the period 1.5 days to 189.5 days was analyzed for histochemical studies). Formol proved to be the best for preserving cell morphology during both short-term and long-term fixation. Alcohol fixatives mainly affected the nuclear morphology, therefore they are not completely suitable for histomorphological analysis. The best preservation of nuclear morphology was achieved with Bouin\u27s fixative. For histochemical studies and shortterm fixation, fixative solutions of all 3 groups (crosslinking, denaturing fixatives and fixatives combining both denaturing and cross-linking effects) were suitable. For long-term fixation, the alcohol fixative methacarn proved to be the best in histochemical studies. Finally, for molecular genetic studies, methacarn was the best fixative, while Bouin\u27s fluid was completely unsuitable. Formalin was confirmed as the most universal fixative overall. However, the selection of a suitable fixative should always be made depending on the specific pathological study and the fixation time
Seaweed extract and fulvic acid application affect the biomass performance, the essential oil yield and composition of Sicilian oregano grown in an organic agricultural system
No full textOriganum vulgare ssp. hirtum is one of the taxa used as \u27oregano\u27 and is medicinal and aromatic plant (MAP) utilized worldwide in various sectors. Nowadays, agricultural systems are moving towards sustainable, organic, and environmentally friendly agricultural production and biostimulants have been used in recent years as a potential strategy. The objective of this research was to investigate the influence of seaweed extract based on Aschophyllum nodosum (AN) and fulvic acid (FA), applied with two different doses, on morphological parameters, fresh and dry yield, essential oil (EO) traits, total phenolic content (TPC), antioxidant activity (AA) and rosmarinic acid content (RAC) of organic oregano. Two-year experiment was conducted using a randomized complete block design with one main factor (foliar biostimulant) and 3 replicates. In AN- and FA-treated plants, increases in fresh biomass between 0.3 and 8.4 t ha- 1 and in dry biomass between 0.5 and 3.0 t ha- 1 were observed. The application of the lowest doses of fulvic acid (FA4) produced the highest EO contents (3.49 % and 3.46 %) and EO yields (73.3 and 97.4 kg ha- 1) in both years. The application of the lowest doses of FA produced an increase (on average 4 %) in thymol content. Biostimulant application generated contrasting response, and, in some cases, a reduction in some chemical parameters compared with control plants. The findings of this study contribute to add novelty in cultivation of oregano. The application of low doses of AN and FA allows to increase yields and improve some qualities of the secondary metabolites from organic oregano
The haplotype-resolved Prymnesium parvum (type B) microalga genome reveals the genetic basis of its fish-killing toxins
No full textThe catastrophic loss of aquatic life in the Central European Oder River in 2022, caused by a toxic bloom of the haptophyte microalga Prymnesium parvum (in a wide sense, s.l.), underscores the need to improve our understanding of the genomic basis of the toxin. Previous morphological, phylogenetic, and genomic studies have revealed cryptic diversity within P. parvum s.l. and uncovered three clade-specific (types A, B, and C) prymnesin toxins. Here, we used state-of-the-art long-read sequencing and assembled the first haplotype-resolved diploid genome of a P. parvum type B from the strain responsible for the Oder disaster. Comparative analyses with type A genomes uncovered a genome-size expansion driven by repetitive elements in type B. We also found conserved synteny but divergent evolution in several polyketide synthase (PKS) genes, which are known to underlie toxin production in combination with environmental cues. We identified an approximately 20-kbp deletion in the largest PKS gene of type B that we link to differences in the chemical structure of types A and B prymnesins. Flow cytometry and electron microscopy analyses confirmed diploidy in the Oder River strain and revealed differences to closely related strains in both ploidy and morphology. Our results provide unprecedented resolution of strain diversity in P. parvum s.l. and a better understanding of the genomic basis of toxin variability in haptophytes. The reference-quality genome will enable us to better understand changes in microbial diversity in the face of increasing environmental pressures and provides a basis for strain-level monitoring of invasive Prymnesium in the future
A novel assessment of whole-mount Gleason grading in prostate cancer to identify candidates for radical prostatectomy: a machine learning-based multiomics study
No full textPurpose: This study aims to assess whole-mount Gleason grading (GG) in prostate cancer (PCa) accurately using a multiomics machine learning (ML) model and to compare its performance with biopsy-proven GG (bxGG) assessment.
Materials and Methods: A total of 146 patients with PCa recruited in a pilot study of a prospective clinical trial (NCT02659527) were retrospectively included in the side study, all of whom underwent 68Ga-PSMA-11 integrated positron emission tomography (PET) / magnetic resonance (MR) before radical prostatectomy (RP) between May 2014 and April 2020. To establish a multiomics ML model, we quantified PET radiomics features, pathway-level genomics features from whole exome sequencing, and pathomics features derived from immunohistochemical staining of 11 biomarkers. Based on the multiomics dataset, five ML models were established and validated using 100-fold Monte Carlo cross-validation.
Results: Among five ML models, the random forest (RF) model performed best in terms of the area under the curve (AUC). Compared to bxGG assessment alone, the RF model was superior in terms of AUC (0.87 vs 0.75), specificity (0.72 vs 0.61), positive predictive value (0.79 vs 0.75), and accuracy (0.78 vs 0.77) and showed slightly decreased sensitivity (0.83 vs 0.89) and negative predictive value (0.80 vs 0.81). Among the feature categories, bxGG was identified as the most important feature, followed by pathomics, clinical, radiomics and genomics features. The three important individual features were bxGG, PSA staining and one intensity-related radiomics feature.
Conclusion: The findings demonstrate a superior assessment of the developed multiomics-based ML model in whole-mount GG compared to the current clinical baseline of bxGG. This enables personalized patient management by identifying high-risk PCa patients for RP
Do kea parrots infer the weight of objects from their movement in a breeze?
No full textWeight, though it cannot be seen directly, pervades nearly every aspect of an animal\u27s life. However, the extent to which non-human animals reason about the property of weight remains poorly understood. Recent evidence highlights birds as a promising group for testing this ability: for example, New Caledonian crows can infer the weight of objects after observing their movements in a breeze. Here, we tested for similar weight inference abilities in kea (Nestor notabilis), a parrot species known for its sophisticated problem-solving skills. Subjects were trained to exchange objects of a target weight (light or heavy) for a food reward. They were then allowed to observe pairs of novel objects (one light and one heavy) hung in front of an electric fan in both an experimental condition (fan on, light object moving) and a control condition (fan off, both objects motionless). The birds were subsequently presented with test trials in which they could use the information from the demonstration to select an object of their target weight. We found that, unlike New Caledonian crows, kea did not perform significantly better on trials in which they observed the objects\u27 movements and discussed our findings within the context of the kea\u27s highly explorative nature
Developmental Social Experience Changes Behavior in a Threatening Environment in Corydoras Catfish
No full textCoordinated responses to threats are important for predator evasion in many species. This study examines the effect of developmental social experience on antipredator behavior and group cohesion in a highly gregarious catfish that communicates via tactile interaction, Corydoras aeneus. We reared fish either in a mixed-age group of age-matched peers and adult C. aeneus (mixed-age condition, or MAC), or with age-matched peers only (same-age condition, or SAC). A startle test was conducted with small groups of subadults from either social rearing condition. Prior to any startle events, SAC subadults had increased tactile communication compared to MAC subadults, but SAC individuals were overall less active. SAC fish exhibited a stronger antipredator response to startles, and were more likely to freeze or take refuge in cover in response to a startle than MAC fish. MAC fish tended to respond to startle events by maintaining or decreasing their cohesion, whereas SAC fish tended to maintain or increase their cohesion. These behavioral differences are attributed to MAC fish developing with group protection as a result of shoaling with adults, resulting in reduced antipredator responses when reared with adults. This study underscores how social context during development can be critical in shaping how individuals perceive and respond to potential threats in their environment
Granulocytes and mast cells in AllergoOncology-Bridging allergy to cancer: An EAACI position paper
No full textDerived from the myeloid lineage, granulocytes, including basophils, eosinophils, and neutrophils, along with mast cells, play important, often disparate, roles across the allergic disease spectrum. While these cells and their mediators are commonly associated with allergic inflammation, they also exhibit several functions either promoting or restricting tumor growth. In this Position Paper we discuss common granulocyte and mast cell features relating to immunomodulatory functions in allergy and in cancer. We highlight key mechanisms which may inform cancer treatment and propose pertinent areas for future research. We suggest areas where understanding the communication between granulocytes, mast cells, and the tumor microenvironment, will be crucial for identifying immune mechanisms that may be harnessed to counteract tumor development. For example, a comprehensive understanding of allergic and immune factors driving distinct neutrophil states and those mechanisms that link mast cells with immunotherapy resistance, might enable targeted manipulation of specific subpopulations, leading to precision immunotherapy in cancer. We recommend specific areas of investigation in AllergoOncology and knowledge exchange across disease contexts to uncover pertinent reciprocal functions in allergy and cancer and allow therapeutic manipulation of these powerful cell populations. These will help address the unmet needs in stratifying and managing patients with allergic diseases and cancer