83602 research outputs found
Sort by
Transcriptome analysis of the allometric growth of golden pompano (<em>Trachinotus ovatus</em>) following soybean meal feed
Get PDFGolden pompano (*Trachinotus ovatus*) is a marine fish of great commercial value. It was selected for a study on allometric growth using fermented soybean meal (SBM) as the primary protein source during an 8-week culture period. By comparing the gene expression levels of different individuals in the fermented soybean meal group, we discovered that 1026 genes exhibited significant changes in slow and fast-growth individuals. Among these genes, 358 showed high expression levels, while 668 showed low ones. Subsequently, we conducted go function annotation and KEGG pathway enrichment analysis on all the significantly differentially expressed genes. This analysis revealed that many of these genes were associated with oxidative phosphorylation, steroid biosynthesis, glyceride metabolism, alanine, aspartic acid, and glutamate metabolism. Identifying these differentially expressed genes is a foundation for unraveling the molecular mechanisms behind growth and development. Additionally, it provides valuable gene data for future studies on the cloning and expression of growth-related genes and offers insights for subsequent biological research
Seasonal variation of phytoplankton in My Thanh River, Mekong delta, Vietnam
Get PDFA study on the seasonal variation of phytoplankton composition was conducted at the upper, middle, and lower parts of the My Thanh River, which supplies an important source of water for aquaculture. Qualitative and quantitative samples of phytoplankton were collected monthly at both high and low tide. The results showed that a total of 171 phytoplankton (algae) species were recorded, belonging to 59 genera and 5 phyla. Diatoms were the most abundant group with the highest species number, followed by green algae. The other phyla possessed a lower number of species. The species composition was more diverse in the rainy season and at high tide at most of the sampling sites. The mean density of algae varied from 30,900-43,521 ind.L^-1^. The density of diatoms was higher in the middle and lower parts. At the same time, euglenoids displayed the highest density in the upper part, showing a difference in the dominant algae group under the influence of salinity. Salinity was found to be significantly positively correlated (p<0.01) with diatoms, whereas it was negatively correlated (p<0.05) with blue-green algae and euglenoids. The algae composition was quite diverse, with the H' index ranging from 2.0-3.3, showing the water quality was slightly to moderately polluted
Age, growth, and mortality of Bogue (<em>Boops boops</em>, Linnaeus, 1758) from the Antalya Bay (Northwest Mediterranean Sea, Türkiye)
Get PDFBogue (Boops boops, Linnaeus, 1758) that was gathered in Antalya Bay had their ages, growth rates, and mortality examined. Using the von Bertalanffy equation, Lt = 37.50 (1 - e-0.15(t + 1.32)) (R2 = 0.988), growth in length was expressed for the entire sample without revealing any disparities between the sexes. The values of the allometric coefficient (b) of the length-weight relationships specify negative allometric growth (b < 3) in females, males, and overall sexes. Total and natural mortality were found to be Z= 1.12 y-1, and M= 0.36 y-1. The exploitation ratio E = 0.68 indicated that the population was overexploited
Identification and pathogenicity of Aeromonas veronii isolated from sexually mature female Hypophthalmichthys molitrix
Get PDFAn outbreak of bacterial septicemia in female silver carp *Hypophthalmichthys molitrix*, which caused significant death of the fish in the Yantian Reservoir, was investigated. The pathogen was isolated from diseased fish and identified as *Aeromonas veronii* utilizing biochemical characteristics and molecular methods analyses. An artificial infection experiment indicated that the strain caused 100% mortality of juvenile silver carp and mature female fish with eggs but no death of the mature male fish. Silver carp challenged with *A. veronii* showed similar clinical signs with naturally infected fish. The histopathological study revealed that *A. veronii* infection caused the increment of hemosiderin granules and the vacuole formation in tissues of the spleen and livers, as well as the collapse, deformation, and disintegration of egg cells. The ACP, AKP, and CAT enzyme activities in the serum of both naturally and artificially infected silver carp were decreased significantly with the severe infection. In this study, *A. veronii* was isolated and identified as the primary bacterial pathogen causing the mass death of sexually mature female silver carp with eggs in Yantian Reservoir
Comparative analysis of <em>Streptococcus agalactiae</em> S03 and S07 isolated from <em>Schizothorax spp.</em> with different antibiotic resistance and virulence
No full textStreptococcus agalactiae (GBS) is an important Gram-positive pathogen of fish aquaculture worldwide. In this study, we performed a comparative analysis of GBS S03 (serotype III) and S07 (serotype Ia) isolated from Schizothorax spp.. We explored the association between phenotypic antibiotic resistance, virulence, and genomic characteristics. Antimicrobial sensitivity tests on 12 common antibiotics using the disc diffusion method revealed that the GBS S03 resisted seven antibiotics, while GBS S07 showed sensitivity to eleven antibiotics. Pathogenicity analysis demonstrated greater virulence of GBS S07 than S03. Then, the occurrence of antibiotic resistance and virulence genes were identified using the whole-genome sequence (WGS) of GBS S03 and GBS S07. Besides just GBS S03 had gyrA and parC gene mutations, there were mefE, tetO, lnuB, lsaE, APH3', and sat-4 resistance genes present only in GBS S03 genome. In addition to 51 virulence genes in both GBS S03 and S07 genomes, GBS S07 carried virulence genes associated with invasion, such as SAN1519, rfbA and cylE_ genes. There was complete concordance between genotypic evidence and phenotypic characteristics. Virulence factors and phylogenetic analysis showed that GBS S03 and human sources shared an extremely close evolutionary relationship. Our findings also provide important proof for using WGS as an effective tool for phenotypic predictions of GBS
Bottling Paradise: The Future of Glass Bottle Archaeology in Hawai‘i
Get PDFAs common-place consumables bearing the marks of datable production techniques and often durable labeling, glass bottles are a goldmine for any archaeologist equipped with the right analytical toolkit. By learning to decipher the age, sources, and uses of glass bottles, archaeologists not only gain a valuable tool for dating historic sites, they open a window into the trade networks and consumption patterns of the past, topics that are perennial favorites of the discipline. In analyzing glass bottle assemblages, certain aspects of a bottle’s life can be determined from close inspection of the bottle itself. These include: date of manufacture, place of manufacture, intended function, particular lip shape (i.e., bottle type), intended content, and place of bottling
Transcriptome analysis reveals the important roles of a two-component system, flagellar assembly, active efflux system and outer membrane proteins in the anti-quinolone ability of Vibrio harveyi from orange-spotted grouper (<em>Epinephelus coioides</em>)
Get PDFThe drug resistance of Vibrio harveyi in aquaculture became more severe because the control of Vibriosis depends majorly on the current antibiotics. Transcriptomes of a wild-type strain (VS) and its quinolone-resistant mutants (VR) of V. harveyi were respectively sequenced by RNA-seq technology. A total of 2,082 unigenes were obtained after de novo splicing and assembly. 129 genes were identified with significant differential expression in strain VR compared to strain VS, among which 65 were up-regulated and 64 down-regulated. Then, functional annotation and enrichment analysis of these differentially expressed genes (DEGs) were performed. GO enrichment results showed that DEGs focused mainly on cell structure, substance metabolism, and transporter. COG classification of the DEGs mainly focused on amino acid transport and metabolism, cell wall/membrane biosynthesis, carbohydrate transport and metabolism, ribosomal structure, and biosynthesis. KEGG pathways related to a two-component system, ABC transport system and flagellar assembly (ko02040) were enriched significantly, and 9 genes associated with quinolone-resistance ability, including genes for resistance-related transport proteins, outer membrane proteins, and DNA repair-related proteins were discovered through analysis of the drug-resistance related genes. Ten DEGs (including the above part genes of 9 drug resistance-related genes) in the transcriptome data were taken to analyze their expression with real-time qPCR. The results were the same as the changes of the above transcriptome analysis, further confirming the reliability of the transcriptome sequencing and data analysis. In a word, genes from a two-component system, flagellar assembly, active efflux system and outer membrane proteins take great roles in the quinolone-resistance of V. harveyi. These results provide enough information for further study on the molecular mechanism of quinolone-resistance and give a helpful transcriptomic resource to unravel the contact between quinolone-resistance and metabolic pathways in Vibrios