53161 research outputs found
Sort by
Memory effects of climate and vegetation affecting net ecosystem CO2 fluxes in global forests
No full textForests play a crucial role in the global carbon (C) cycle by storing and sequestering a substantial amount of C in the terrestrial biosphere. Due to temporal dynamics in climate and vegetation activity, there are significant regional variations in carbon dioxide (CO2) fluxes between the biosphere and atmosphere in forests that are affecting the global C cycle. Current forest CO2 flux dynamics are controlled by instantaneous climate, soil, and vegetation conditions, which carry legacy effects from disturbances and extreme climate events. Our level of understanding from the legacies of these processes on net CO2 fluxes is still limited due to their complexities and their long-term effects. Here, we combined remote sensing, climate, and eddy-covariance flux data to study net ecosystem CO2 exchange (NEE) at 185 forest sites globally. Instead of commonly used non-dynamic statistical methods, we employed a type of recurrent neural network (RNN), called Long Short-Term Memory network (LSTM) that captures information from the vegetation and climate's temporal dynamics. The resulting data-driven model integrates interannual and seasonal variations of climate and vegetation by using Landsat and climate data at each site. The presented LSTM algorithm was able to effectively describe the overall seasonal variability (Nash-Sutcliffe efficiency, NSE = 0.66) and across-site (NSE = 0.42) variations in NEE, while it had less success in predicting specific seasonal and interannual anomalies (NSE = 0.07). This analysis demonstrated that an LSTM approach with embedded climate and vegetation memory effects outperformed a non-dynamic statistical model (i.e. Random Forest) for estimating NEE. Additionally, it is shown that the vegetation mean seasonal cycle embeds most of the information content to realistically explain the spatial and seasonal variations in NEE. These findings show the relevance of capturing memory effects from both climate and vegetation in quantifying spatio-temporal variations in forest NEE
Reconciling Canopy Interception Parameterization and Rainfall Forcing Frequency in the Community Land Model for Simulating Evapotranspiration of Rainforests and Oil Palm Plantations in Indonesia
No full textBy mediating evapotranspiration processes, plant canopies play an important role in the terrestrial water cycle and regional climate. Substantial uncertainties exist in modeling canopy water interception and related hydrological processes due to rainfall forcing frequency selection and varying canopy traits. Here we design a new time interpolation method "zero" to better represent convective-type precipitation in tropical regions. We also implement and recalibrate plant functional type-specific interception parameters for rainforests and oil palm plantations, where oil palms express higher water interception capacity than forests, using the Community Land Model (CLM) versions 4.5 and 5.0 with CLM-Palm embedded. Reconciling the interception scheme with realistic precipitation forcing produces more accurate canopy evaporation and transpiration for both plant functional types, which in turn improves simulated evapotranspiration and energy partitioning when benchmarked against observations from our study sites in Indonesia and an extensive literature review. Regional simulations for Sumatra and Kalimantan show that industrial oil palm plantations have 18-27% higher transpiration and 15-20% higher evapotranspiration than forests on an annual regional average basis across different ages or successional stages, even though the forests experience higher average precipitation according to reanalysis data. Our land-only modeling results indicate that current oil palm plantations in Sumatra and Kalimantan use 15-20% more water (mean 220 mm or 20 Gt) per year compared to lowland rainforests of the same extent. The extra water use by oil palm reduces soil moisture and runoff that could affect ecosystem services such as productivity of staple crops and availability of drinking water in rural areas
Lack of toxic interaction between fusariotoxins in broiler chickens fed throughout their life at the highest level tolerated in the european union
No full textFusarium mycotoxins (FUS) occur frequently in poultry diets, and regulatory limits are laid down in several countries. However, the limits were established for exposure to a single mycotoxin, whereas multiple contamination is more realistic, and different studies have demonstrated that it is not possible to predict interactions between mycotoxins. The purpose of this study was thus to compare the toxic effect of deoxynivalenol (DON), fumonisins (FB) and zearalenone (ZON), alone and in combination on broiler chickens, at the maximum tolerated level established by the EU for poultry feed. Experimental corn-soybean diets incorporated ground cultured toxigenic Fusarium strains. One feed was formulated for chickens 0 to 10 days old and another for chickens 11 to 35 days old. The control diets were mycotoxin free, the DON diets contained 5 mg DON/kg, the FB diet contained 20 mg FB1 + FB2/kg, and the ZON diet contained 0.5 mg ZON/kg. The DONFBZON diet contained 5, 20, and 0.5 mg/kg of DON, FB1 + FB2, and ZON, respectively. Diets were distributed ad libitum to 70 broilers (male Ross PM3) separated into five groups of 14 chickens each reared in individual cages from one to 35 days of age. On day 35, after a starvation period of 8 h, a blood sample was collected, and all the animals were killed and autopsied. No difference between groups that could be attributed to FUS was observed in performances, the relative weight of organs, biochemistry, histopathology, intestinal morphometry, variables of oxidative damage, and markers of testicle toxicity. A significant increase in sphinganine and in the sphinganine to sphingosine ratio was observed in broilers fed FB. Taken together, these results suggest that the regulatory guidelines established for single contamination of broiler chickens fed with DON, FB, and ZON can also be used in the case of multiple contamination with these toxins
Innovative mucosal vaccine formulations against Influenza a virus Infections
No full textDespite efforts made to develop efficient preventive strategies, infections with influenza A viruses (IAV) continue to cause serious clinical and economic problems. Current licensed human vaccines are mainly inactivated whole virus particles or split-virion administered via the parenteral route. These vaccines provide incomplete protection against IAV in high-risk groups and are poorly/not effective against the constant antigenic drift/shift occurring in circulating strains. Advances in mucosal vaccinology and in the understanding of the protective anti-influenza immune mechanisms suggest that intranasal immunization is a promising strategy to fight against IAV. To date, human mucosal anti-influenza vaccines consist of live attenuated strains administered intranasally, which elicit higher local humoral and cellular immune responses than conventional parenteral vaccines. However, because of inconsistent protective efficacy and safety concerns regarding the use of live viral strains, new vaccine candidates are urgently needed. To prime and induce potent and long-lived protective immune responses, mucosal vaccine formulations need to ensure the immunoavailability and the immunostimulating capacity of the vaccine antigen(s) at the mucosal surfaces, while being minimally reactogenic/toxic. The purpose of this review is to compile innovative delivery/adjuvant systems tested for intranasal administration of inactivated influenza vaccines, including micro/nanosized particulate carriers such as lipid-based particles, virus-like particles and polymers associated or not with immunopotentiatory molecules including microorganism-derived toxins, Toll-like receptor ligands and cytokines. The capacity of these vaccines to trigger specific mucosal and systemic humoral and cellular responses against IAV and their (cross)-protective potential are considered
A transcriptome-based phylogenetic study of hard ticks (Ixodidae)
No full textHard ticks are widely distributed across temperate regions, show strong variation in host associations, and are potential vectors of a diversity of medically important zoonoses, such as Lyme disease. To address unresolved issues with respect to the evolutionary relationships among certain species or genera, we produced novel RNA-Seq data sets for nine different Ixodes species. We combined this new data with 18 data sets obtained from public databases, both for Ixodes and non-Ixodes hard tick species, using soft ticks as an outgroup. We assembled transcriptomes (for 27 species in total), predicted coding sequences and identified single copy orthologues (SCO). Using Maximum-likelihood and Bayesian frameworks, we reconstructed a hard tick phylogeny for the nuclear genome. We also obtained a mitochondrial DNA-based phylogeny using published genome sequences and mitochondrial sequences derived from the new transcriptomes. Our results confirm previous studies showing that the Ixodes genus is monophyletic and clarify the relationships among Ixodes sub-genera. This work provides a baseline for studying the evolutionary history of ticks: we indeed found an unexpected acceleration of substitutions for mitochondrial sequences of Prostriata, and for nuclear and mitochondrial genes of two species of Rhipicephalus, which we relate with patterns of genome architecture and changes of life-cycle, respectivel
Neonatal consumption of oligosaccharides greatly increases l-cell density without significant consequence for adult eating behavior.
No full textOligosaccharides (OS) are commonly added to infant formulas, however, their physiological impact, particularly on adult health programming, is poorly described. In adult animals, OS modify microbiota and stimulate colonic fermentation and enteroendocrine cell (EEC) activity. Since neonatal changes in microbiota and/or EEC density could be long-lasting and EEC-derived peptides do regulate short-term food intake, we hypothesized that neonatal OS consumption could modulate early EECs, with possible consequences for adult eating behavior. Suckling rats were supplemented with fructo-oligosaccharides (FOS), beta-galacto-oligosaccharides/inulin (GOS/In) mix, alpha-galacto-oligosaccharides (αGOS) at 3.2 g/kg, or a control solution (CTL) between postnatal day (PND) 5 and 14/15. Pups were either sacrificed at PND14/15 or weaned at PND21 onto standard chow. The effects on both microbiota and EEC were characterized at PND14/15, and eating behavior at adulthood. Very early OS supplementation drastically impacted the intestinal environment, endocrine lineage proliferation/differentiation particularly in the ileum, and the density of GLP-1 cells and production of satiety-related peptides (GLP-1 and PYY) in the neonatal period. However, it failed to induce any significant lasting changes on intestinal microbiota, enteropeptide secretion or eating behavior later in life. Overall, the results did not demonstrate any OS programming effect on satiety peptides secreted by L-cells or on food consumption, an observation which is a reassuring outlook from a human perspective
Biopesticides improve efficiency of the sterile insect technique for controlling mosquito-driven dengue epidemics
No full textVarious mosquito control methods use factory raised males to suppress vector densities. But the efficiency of these methods is currently insufficient to prevent epidemics of arbovirus diseases such as dengue, chikungunya or Zika. Suggestions that the sterile insect technique (SIT) could be "boosted" by applying biopesticides to sterile males remain unquantified. Here, we assess mathematically the gains to SIT for Aedes control of either: boosting with the pupicide pyriproxifen (BSIT); or, contaminating mosquitoes at auto-dissemination stations. Thresholds in sterile male release rate and competitiveness are identified, above which mosquitoes are eliminated asymptotically. Boosting reduces these thresholds and aids population destabilisation, even at sub-threshold release rates. No equivalent bifurcation exists in the auto-dissemination sub-model. Analysis suggests that BSIT can reduce by over 95% the total release required to circumvent dengue epidemics compared to SIT. We conclude, BSIT provides a powerful new tool for the integrated management of mosquito borne diseases
Improvement of Spatial Modeling of Cr, Pb, Cd, As and Ni in Soil Based on Portable X-ray Fluorescence (PXRF) and Geostatistics: A Case Study in East China
No full textTo verify the feasibility of portable X-ray fluorescence (PXRF) for rapidly analyzing, assessing and improving soil heavy metals mapping, 351 samples were collected from Fuyang District, Hangzhou City, in eastern China. Ordinary kriging (OK) and co-ordinary kriging (COK) combined with PXRF measurements were used to explore spatial patterns of heavy metals content in the soil. The Getis-Ord index was calculated to discern hot spots of heavy metals. Finally, multi-variable indicator kriging was conducted to obtain a map of multi-heavy metals pollution. The results indicated Cd is the primary pollution element in Fuyang, followed by As and Pb. Application of PXRF measurements as covariates in COK improved model accuracy, especially for Pb and Cd. Heavy metals pollution hot spots were mainly detected in northern Fuyang and plains along the Fuchun River in southern Fuyang because of mining, industrial and traffic activities, and irrigation with polluted water. Area with high risk of multi-heavy metals pollution mainly distributed in plain along the Fuchun River and the eastern Fuyang. These findings certified the feasibility of using PXRF as an efficient and reliable method for soil heavy metals pollution assessment and mapping, which could contribute to reduce the cost of surveys and pollution remediation