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Soil bacterial community shifts driven by restoration time and steppe types in the degraded steppe of Inner Mongolia
No full textDegraded grassland can be restored through management practices such as fencing to protect land from over-grazing. However, little is known about the dynamics of underground microbial communities and their associated ecological function during the restoration process. In this study, we investigated changes in the soil bacterial community composition with varying restoration time in the Leymus chinensis steppe. We also studied the differences in the soil bacterial community composition between a Leymus chinensis steppe and a Stipa grandis steppe at the same restoration time in the Inner Mongolia of China. Results showed that restoration of the degraded steppe through fencing significantly changed the bacterial community composition through the restoration time. The relative abundances of Chlorofiexi and Cyanobacteria decreased significantly with restoration. However, the relative abundances of copiotrophic Proteobacteria and Bacteriodetes increased. Significant changes for many dominant taxa occurred between 7 and 13 years of restoration time in the Leymus chinensis steppe. Shifts in the composition of bacterial communities with fencing and grazing were driven by multiple factors, including soil moisture, pH, nutrients (organic carbon and nitrogen, etc.). Network analysis of soil bacterial community compositions showed that the three largest modules in co-occurrence networks were separated by fencing, grazing and steppe type. This study revealed the successions of underground microbial communities associated with steppe restoration management over time
Geographic variation in body size and its relationship with environmental gradients in the Oriental Garden Lizard, Calotes versicolor
No full textPatterns of geographic variation in body size are predicted to evolve as adaptations to local environmental gradients. However, many of these clinal patterns in body size, such as Bergmann's rule, are controversial and require further investigation into ectotherms such as reptiles on a regional scale. To examine the environmental variables (temperature, precipitation, topography and primary productivity) that shaped patterns of geographic variation in body size in the reptile Calotes versicolor, we sampled 180 adult specimens (91 males and 89 females) at 40 locations across the species range in China. The MANOVA results suggest significant sexual size dimorphism in C. versicolor (F-23,F-124 = 11.32, p < .001). Our results showed that C. versicolor failed to fit the Bergmann's rule. We found that the most important predictors of variation in body size of C. versicolor differed for males and females, but mechanisms related to heat balance and water availability hypotheses were involved in both sexes. Temperature seasonality, precipitation of the driest month, precipitation seasonality, and precipitation of the driest quarter were the most important predictors of variation in body size in males, whereas mean precipitation of the warmest quarter, mean temperature of the wettest quarter, precipitation seasonality, and precipitation of the wettest month were most important for body size variation in females. The discrepancy between patterns of association between the sexes suggested that different selection pressures may be acting in males and females
The development of CotA mediator cocktail system for dyes decolorization
No full textAimsThe increasing use of dyes leads to serious environmental concerns, it is significant to explore eco-friendly and economic approaches for dye decolorization. This study aimed to develop mediator cocktail (AS and ABTS) for enhancing the capability of laccase-mediator system in the removal of dyes. Methods and ResultsBy mediator screening, the mediators of ABTS and AS (ABTS, 2, 2-azino-bis-(3-ethylbenzothiazo-thiazoline-6-sulphonic acid); AS, acetosyringone) were combined for dyes decolorization. The Box-Behnken Design and response surface analysis was performed to optimize experiment conditions. Comparing the CotA-ABTS-AS cocktail system with CotA-single mediator system showed that the coupling of ABTS and AS could increase the decolorization rate 15 times higher, save a third of the cost and shorten the reaction time by 50%. In addition, our studies revealed that sequential oxidation may occur in CotA-ABTS-AS system. ConclusionsCompared with CotA laccase-single mediator system, the CotA-ABTS-AS cocktail system showed advantages including higher efficiency, lower cost and shorter reaction time. Significance and Impact of the StudyThis was the first report on the dyes decolorization by laccase mediator cocktail system. These results paved the curb for the application of laccase mediator system in various industrial processes
New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes
No full textPolyethylene terephthalate (PET) is one of the most important synthetic polymers used today. Unfortunately, the polymers accumulate in nature and to date no highly active enzymes are known that can degrade it at high velocity. Enzymes involved in PET degradation are mainly alpha- and beta-hydrolases, like cutinases and related enzymes (EC 3.1.1). Currently, only a small number of such enzymes are well characterized. In this work, a search algorithm was developed that identified 504 possible PET hydrolase candidate genes from various databases. A further global search that comprised more than 16 Gb of sequence information within 108 marine and 25 terrestrial metagenomes obtained from the Integrated Microbial Genome (IMG) database detected 349 putative PET hydrolases. Heterologous expression of four such candidate enzymes verified the function of these enzymes and confirmed the usefulness of the developed search algorithm. In this way, two novel and thermostable enzymes with high potential for downstream application were partially characterized. Clustering of 504 novel enzyme candidates based on amino acid similarities indicated that PET hydrolases mainly occur in the phyla of Actinobacteria, Proteobacteria, and Bacteroidetes. Within the Proteobacteria, the Betaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria were the main hosts. Remarkably enough, in the marine environment, bacteria affiliated with the phylum Bacteroidetes appear to be the main hosts of PET hydrolase genes, rather than Actinobacteria or Proteobacteria, as observed for the terrestrial metagenomes. Our data further imply that PET hydrolases are truly rare enzymes. The highest occurrence of 1.5 hits/Mb was observed in sequences from a sample site containing crude oil. IMPORTANCE Polyethylene terephthalate (PET) accumulates in our environment without significant microbial conversion. Although a few PET hydrolases are already known, it is still unknown how frequently they appear and with which main bacterial phyla they are affiliated. In this study, deep sequence mining of protein databases and metagenomes demonstrated that PET hydrolases indeed occur at very low frequencies in the environment. Furthermore, it was possible to link them to phyla that were previously not known to harbor such enzymes. This work contributes novel knowledge on the phylogenetic relationships, the recent evolution, and the global distribution of PET hydrolases. Finally, we describe the biochemical traits of four novel PET hydrolases
Effects of Fertilizer Application Rate and Planting Density on Photosynthetic Characteristics, Yield and Yield Components in Waxy Wheat
No full textWaxy wheat (Triticum aestivum L.) is grown throughout the world for its specific quality. Fertilization and planting density are two crucial factors that affect waxy wheat yield and photosynthetic capacity. The objectives of the research were to determine the effects of fertilization and planting density on photosynthetic characteristics, yield, and yield components of waxy wheat, including Yield, SSR, TGW, GNPP, GWPP, PH, HI, Pn, Gs, Ci, E and WUE using the method of field experiment, in which there were three levels (150, 300, and 450 kg ha(-1)) of fertilizer application rate and three levels (1.35, 1.8, and 2.25 x 10(6) plants ha(-1)) of planting density. The results suggested that photosynthetic characteristics, yield, and yield components had close relationship with fertilization levels and planting density. Under the same plant density, with the increase of fertilization, Yield, SSR, TGW, GNPP, GWPP, HI, Pn, Gs, E and WUE increased and then decreased, PH increased, but Ci decreased. Under the same fertilization, with the increase of plant density, Yield, SSR, TGW, GNPP, GWPP, HI increased and then decreased, PH, Pn, Gs and E increased, PH and WUE declined. The results also showed that F2 (300 kg ha(-1)) and D2 (1.8 x 10(6) plants ha(-1)) was a better match in this experiment, which could obtain a higher grain yield 4961.61 kg ha(-1). Consequently, this combination of fertilizer application rate and plant densities are useful to get high yield of waxy wheat
Bioinspired Catalysis: Self-Assembly of a Protein and DNA as a Catalyst for the Aldol Reaction in Aqueous Media
No full textAn interesting bioinspired catalyst formed from readily available DNA and a protein through electrostatic interaction in situ proved to be efficient in catalyzing aldol reactions under mild conditions in water. By using a self-assembling catalytic system formed from protamine and DNA, aldol adducts were obtained with high yields and moderate enantioselectivities. Preliminary experiments demonstrated that the chirality of the DNA could be effectively transferred to the reaction product through the bound molecules or proteins
Asplenium serratifolium (Aspleniaceae), a New Fern Species from Central Vietnam Based on Morphological and Molecular Evidence
No full textAsplenium serratifolium (Aspleniaceae), a new fern species from central Vietnam, is described and illustrated. The new species is characterized by plants 10-18 cm tall, laminae pinnatipartite, lobe margins entire or with shallow teeth, and veins simple or forked. Molecular phylogenetic analysis based on five plastid markers (atpB, rbeL, rps4, rps4-trnS, and trnL-F) indicate that the new species is closely related to A. ensiforme
Bioethanol from sugarcane bagasse: Focused on optimum of lignin content and reduction of enzyme addition
No full textTo investigate the effect of delignification on enzymatic saccharification and ethanol fermentation of sugarcane bagasse (SCB), NaClO, NaOH, and Na2CO3 were used to prepare SCB with different lignin contents. We found that a lignin content of approximately 11% was sufficient for enzymatic saccharification and fermentation. Based on this result, an economical delignification pretreatment method using a combination of acid and alkali (CAA) was applied. Lignin content of 11.7% was obtained after CAA pretreatment with 0.5% w/v H2SO4 at 140 degrees C for 10 min and 1.0% w/v NaOH at 90 degrees C for 60 min. Presaccharification-simultaneous saccharification and fermentation (P-SSF) of the CAA-pretreated SCB resulted in an ethanol concentration of 43.8 g/L. and an ethanol yield of 81.7%, with an enzyme loading of 15 FPU/g-CAA-pretreated SCB. Enzyme activities (filter paper, carboxymethyl cellulase, and beta-glucosidase activities) were determined in liquid phase during P-SSF, indicating that the residual cellulase activity could be further used. Thus, fed-batch P-SSF was carried out, and an ethanol concentration of 43.1 g/L and an ethanol yield of 80.4% were obtained with an enzyme loading of 10 FPU/g-CAA-pretreated SCB. Fed-batch P-SSF was found to be effective to reduce enzyme loading. (C) 2018 Elsevier Ltd. All rights reserved
Tmem30a Plays Critical Roles in Ensuring the Survival of Hematopoietic Cells and Leukemia Cells in Mice
No full textThe fundamental structure of eukaryotic cell plasma membrane is the phospholipid bilayer, which contains four major phospholipids. These phospholipids are asymmetrically distributed between the outer and inner leaflets. P4-ATPase flippase complexes play essential roles in ensuring this asymmetry. We found that conditional deletion of Tmem30a, the beta subunit of P4-ATPase flippase complex, caused pancytopenia in mice. Tmem30a deficiency resulted in depletion of lineage-committed blood cells in the peripheral blood, spleen, and bone marrow. Ablation of Tmem30a also caused the depletion of hematopoietic stem cells (HSCs). HSC RNA sequencing results revealed that multiple biological processes and signal pathways were involved in the event, including mammalian target of rapamycin signaling, genes for HSC sternness, and genes responding to interferons. Our results also revealed that targeting Tmem30a signaling had therapeutic utility in BCR/ABL1-induced chronic myeloid leukemia
Atypical assortative mating based on body size in an explosive-breeding toad from a tropical island of southern China
No full textMating patterns exhibit considerable infra- and interspecific variation. Sexual selection can lead to the occurrence of random and assortative mating in different populations of the same species. Thus, understanding variation in mating decisions is crucial to understanding variation in the direction of sexual selection. We investigated natural mating patterns in Black-spectacled toads (Duttaphrynus melanostictus), an explosive-breeding species that breeds throughout the year. We captured amplectant pairs (137) and non-amplectant males (212) during breeding seasons from November 2016 to April 2017 in tropical-island population of southern China. Our study found no significant difference in snout-vent length (SVL) between amplectant and non-amplectant males. Female and male SVL were positively correlated with each other. Small females were paired more frequently with small males, less frequently with large males, but had no preference for or against medium males. Medium females exhibited no preference. Large females showed no preference for large males, but were paired less frequently with small males. These data suggested that successful amplectant males had body sizes representative of the entire population. Both random and size-assortative mating were present simultaneously in the same population and within the same breeding season. Female choice was important in shaping the mating behavior of Black-spectacled toads, promoting genotype-frequency stabilization and body-size diversity in the population