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Poplar-based phytomanagement of metal-contaminated sites: associated fungal diversity & effect of mycorrhizal inoculation
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Amélioration de la discrimination des sources primaires et secondaires de l'aérosol organique : utilisation de marqueurs moléculaires et de différentes approches
No full textOrganic aerosols (OAs), originating from a wide variety of sources and atmospheric processes, have strong impacts on air quality and climate change. The present PhD thesis aimed to get a better understanding of OA origins using specific organic molecular markers together with their input into source-receptor model such as positive matrix factorization (PMF). This experimental work was based on two field campaigns, conducted in Grenoble (urban site) over the 2013 year and in the Paris region (suburban site of SIRTA, 25 km southwest of Paris) during an intense PM pollution event in March 2015. Following an extended chemical characterization (from 139 to 216 species quantified), the use of key primary and secondary organic molecular markers within the standard filter-based PMF model allowed to deconvolve 9 and 11 PM10 sources (Grenoble and SIRTA, respectively). These included common ones (biomass burning, traffic, dust, sea salt, secondary inorganics and nitrate), as well as uncommon resolved sources such as primary biogenic OA (fungal spores and plant debris), biogenic secondary AO (SOA) (marine, isoprene oxidation) and anthropogenic SOA (polycyclic aromatic hydrocarbons (PAHs) and/or phenolic compounds oxidation). In addition, high time-resolution filter dataset (4h-timebase) available for the Paris region also illustrated a better understanding of the diurnal profiles and the involved chemical processes. These results could be compared to outputs from other measurement techniques (online ACSM (aerosol chemical speciation monitor), offline AMS (aerosol mass spectrometer) analyses), and/or to other data treatment methodologies (EC (elemental carbon) tracer method and SOA tracer method). A good agreement was obtained between all the methods in terms of separation between primary and secondary OA fractions. Nevertheless, and whatever the method used, still about half of the SOA mass was not fully described. Therefore, a novel OA source apportionment approach has finally been developed by combining online (ACSM) and offline (organic molecular markers) measurements and using a time synchronization script. This combined PMF analysis was performed on the unified matrix. It revealed 10 OA factors, including 4 different biomass burning-related chemical profiles. Compared to conventional approaches, this new methodology provided a more comprehensive description of the atmospheric processes related to the different OA sources.Les aérosols organiques (AO), issus de nombreuses sources et de différents processus atmosphériques, ont un impact significatif sur la qualité de l’air et le changement climatique. L’objectif de ce travail de thèse était d’acquérir une meilleure connaissance de l’origine des AO par l’utilisation de marqueurs organiques moléculaires au sein de modèles source-récepteur de type positive matrix factorization (PMF). Ce travail expérimental était basé sur deux campagnes de prélèvements réalisées à Grenoble (site urbain) au cours de l’année 2013 et dans la région parisienne (site péri-urbain du SIRTA, 25 km au sud-ouest de Paris) lors d’un intense épisode de pollution aux particules (PM) en Mars 2015. Une caractérisation chimique étendue (de 139 à 216 espèces quantifiées) a été réalisée et l’utilisation de marqueurs moléculaires primaires et secondaires clés dans la PMF a permis de déconvoluer de 9 à 11 sources différentes de PM10 (Grenoble et SIRTA, de façon respective) incluant aussi bien des sources classiques (combustion de biomasse, trafic, poussières, sels de mer, nitrate et espèces inorganiques secondaires) que des sources non communément résolues telles que AO biogéniques primaires (spores fongiques et débris de plantes), AO secondaires (AOS) biogéniques (marin, oxydation de l’isoprène) et AOS anthropiques (oxydation des hydrocarbures aromatiques polycycliques (HAP) et/ou des composés phénoliques). En outre, le jeu de données obtenu pour la région parisienne à partir de prélèvements sur des pas de temps courts (4h) a permis d’obtenir une meilleure compréhension des profils diurnes et des processus chimiques impliquées. Ces résultats ont été comparés à ceux issus d’autres techniques de mesures (en temps réel, ACSM (aerosol chemical speciation monitor) et analyse AMS (aerosol mass spectrometer) en différée) et/ou d’autres méthodes de traitement de données (méthodes traceur EC (elemental carbon) et traceur AOS). Un bon accord a été obtenu entre toutes les méthodes en termes de séparation des fractions primaires et secondaires. Cependant, et quelle que soit l’approche utilisée, la moitié de la masse d’AOS n’était toujours pas complètement décrite. Ainsi, une nouvelle approche d’étude des sources de l’AO a été développée en combinant les mesures en temps réel (ACSM) et celles sur filtres (marqueurs moléculaires organiques) et en utilisant un script de synchronisation des données. L’analyse PMF combinée a été réalisée sur la matrice de données unifiée. 10 facteurs AO, incluant 4 profils chimiques différents en lien avec la combustion de biomasse, ont été mis en évidence. Par rapport aux approches conventionnelles, cette nouvelle méthodologie a permis d’obtenir une meilleure compréhension des processus atmosphériques liés aux différentes sources d’AO
Simulation of fine organic aerosols in the western Mediterranean area during the ChArMEx 2013 summer campaign
No full textInternational audienceThe simulation of fine organic aerosols with CTMs (chemistry–transport models) in the western Mediterranean basin has not been studied until recently. The ChArMEx (the Chemistry-Aerosol Mediterranean Experiment) SOP 1b (Special Observation Period 1b) intensive field campaign in summer of 2013 gathered a large and comprehensive data set of observations, allowing the study of different aspects of the Mediterranean atmosphere including the formation of organic aerosols (OAs) in 3-D models. In this study, we used the CHIMERE CTM to perform simulations for the duration of the SAFMED (Secondary Aerosol Formation in the MEDiterranean) period (July to August 2013) of this campaign. In particular, we evaluated four schemes for the simulation of OA, including the CHIMERE standard scheme, the VBS (volatility basis set) standard scheme with two parameterizations including aging of biogenic secondary OA, and a modified version of the VBS scheme which includes fragmentation and formation of nonvolatile OA. The results from these four schemes are compared to observations at two stations in the western Mediterranean basin, located on Ersa, Cap Corse (Corsica, France), and at Cap Es Pinar (Mallorca, Spain). These observations include OA mass concentration, PMF (positive matrix factorization) results of different OA fractions, and C observations showing the fossil or nonfossil origins of carbonaceous particles. Because of the complex orography of the Ersa site, an original method for calculating an orographic representativeness error (ORE) has been developed. It is concluded that the modified VBS scheme is close to observations in all three aspects mentioned above; the standard VBS scheme without BSOA (biogenic secondary organic aerosol) aging also has a satisfactory performance in simulating the mass concentration of OA, but not for the source origin analysis comparisons. In addition, the OA sources over the western Mediterranean basin are explored. OA shows a major biogenic origin, especially at several hundred meters height from the surface; however over the Gulf of Genoa near the surface, the anthropogenic origin is of similar importance. A general assessment of other species was performed to evaluate the robustness of the simulations for this particular domain before evaluating OA simulation schemes. It is also shown that the Cap Corse site presents important orographic complexity, which makes comparison between model simulations and observations difficult. A method was designed to estimate an orographic representativeness error for species measured at Ersa and yields an uncertainty of between 50 and 85 % for primary pollutants, and around 2–10 % for secondary specie
Réseaux Bayésiens Dynamiques : méthodologie pour l’inférence sur les schémas de mode d’Action en Toxicologie
No full textInternational audienceIn toxicology, an Adverse Outcome Pathway (AOP) is a conceptual framework that qualitatively describes the existing knowledge on the links between the two anchor points: Mo- lecular Initiating Event (MIE) and Adverse Outcome (AO) at a level of biological organisation relevant for risk assessment. The transformation of an AOP to its quantitative version, qAOP allows to build a powerful risk assessment tool, thanks to its ability to quantitatively predict the AO. This paper presents a new method for modelling qAOP using Dynamic Bayesian Networks (DBN).En toxicologie, un schéma de mode d’action (AOP : Adverse Outcome Pathway) est un cadre conceptuel qui décrit qualitativement les connaissances existantes concernant les liens entre deux points d’ancrage : un événement initiateur moléculaire (MIE : Molecular Initiating Event) et un résultat défavorable (AO : Adverse Outcome) à un niveau d’organisation biolo- gique pertinent pour l’évaluation du risque. La version quantitative d’un AOP, le qAOP, promet d’être un outil puissant pour l’évaluation des risques, grâce notamment à sa capacité de pré- diction. Cet article présente une méthode de modélisation originale de qAOPs par les réseaux bayésiens dynamiques
Assessment and economic valuation of air pollution impacts on human health over Europe and the United States as calculated by a multi-model ensemble in the framework of AQMEII3
No full textInternational audienceThe impact of air pollution on human health and the associated external costs in Europe and the United States (US) for the year 2010 are modeled by a multi-model ensemble of regional models in the frame of the third phase of the Air Quality Modelling Evaluation International Initiative (AQMEII3). The modeled surface concentrations of O3, CO, SO2 and PM2.5 are used as input to the Economic Valuation of Air Pollution (EVA) system to calculate the resulting health impacts and the associated external costs from each individual model. Along with a base case simulation, additional runs were performed introducing 20% anthropogenic emission reductions both globally and regionally in Europe, North America and east Asia, as defined by the second phase of the Task Force on Hemispheric Transport of Air Pollution (TF-HTAP2). Health impacts estimated by using concentration inputs from different chemistry–transport models (CTMs) to the EVA system can vary up to a factor of 3 in Europe (12 models) and the United States (3 models). In Europe, the multi-model mean total number of premature deaths (acute and chronic) is calculated to be 414000, while in the US, it is estimated to be 160000, in agreement with previous global and regional studies. The economic valuation of these health impacts is calculated to be EUR 300 billion and 145 billion in Europe and the US, respectively. A subset of models that produce the smallest error compared to the surface observations at each time step against an all-model mean ensemble results in increase of health impacts by up to 30% in Europe, while in the US, the optimal ensemble mean led to a decrease in the calculated health impacts by 11%. A total of 54000 and 27500 premature deaths can be avoided by a 20% reduction of global anthropogenic emissions in Europe and the US, respectively. A 20% reduction of North American anthropogenic emissions avoids a total of 1000 premature deaths in Europe and 25000 total premature deaths in the US. A 20% decrease of anthropogenic emissions within the European source region avoids a total of 47000 premature deaths in Europe. Reducing the east Asian anthropogenic emissions by 20% avoids 2000 total premature deaths in the US. These results show that the domestic anthropogenic emissions make the largest impacts on premature deaths on a continental scale, while foreign sources make a minor contribution to adverse impacts of air pollution
Procedures for leukocytes isolation from lymphoid tissues and consequences on immune endpoints used to evaluate fish immune status: A case study on roach (Rutilus rutilus)
No full textInternational audienceThe effects of two protocols (density gradient versus hypotonic lysis) used for leukocyte isolation from three major lymphoid tissue of fish (head-kidney, spleen and blood) were examined on some cell functional activities (tissue leucocytes distributions, phagocytosis, basal and burst oxidative activities) classically used to estimate the fish immune status. Experiments were conducted on roach (Rutilus rutilus), a cyprinid fish model often studied in different eco-physiological contexts (aquaculture, ecotoxicology …). All of immune endpoints were assessed either immediately after cell isolation or after a 12h of incubation in order to observe if a post-isolation incubation may influence the leukocytes activities. Compared to the density gradient, hypotonic lysis is associated with granulocytes enrichments of cell suspensions. This is particularly true for leukocyte suspensions isolated from head kidney where granulocytes are naturally abundant. However, important variabilities in leukocyte distributions were observed in head kidney and spleen cells samples obtained by the use of hypotonic lysis for two incubation conditions used (no incubation or 12h of incubation at 4°C). The density gradient protocol leads to a transitory increase in basal ROS production in spleen lymphocytes and macrophages The blood leukocytes isolated by this same method exhibit high basal oxidative activities after 12h of incubation at 4°C and for the three leukocyte types (lymphocytes, monocytes and granulocytes). The hypotonic lysis is associated with an increase in PMA-induced ROS production especially in head kidney leukocytes. The increases in cell oxidative activities are consistent with increases in granulocyte proportions observed in leukocyte suspensions obtained by hypotonic lysis. Finally, the two protocols have no effect on leukocyte mortality and phagocytic activity. Within limits of our experimental conditions, the spleen is the organ whose leukocyte oxidative activities (stimulated or not) are only slightly influenced by the methods used for leukocyte isolation. This is also the case for the anterior kidney, but for this tissue, it is necessary to incubate the isolated cells for 12hat 4°C before functional analyses. Each of the two methodologies used has advantages and disadvantages. The hypotonic lysis allows to isolate a greater variety of leukocytes types whereas the density gradient used ensures a better stability of cells distributions over time. However, for the same fish species and for the same tissue, the method used to isolate leukocytes influences results and must be taken into consideration during acquired data analysis for evaluation of fish immune status
Photodegradation of novel oral anticoagulants under sunlight irradiation in aqueous matrices
No full text[Departement_IRSTEA]Eaux [TR1_IRSTEA]BELCA [ADD1_IRSTEA]Systèmes aquatiques soumis à des pressions multiples [Departement_IRSTEA]Eaux [TR1_IRSTEA]BELCA [ADD1_IRSTEA]Systèmes aquatiques soumis à des pressions multiplesInternational audienceKinetics of photodegradation of novel oral anticoagulants dabigatran, rivaroxaban, and apixaban were studied under simulated solar light irradiation in purified, mineral, and river waters. Dabigatran and rivaroxaban underwent direct photolysis with polychromatic quantum yields of 2.2 × 10−4 and 4.4 × 10−2, respectively. The direct photodegradation of apixaban was not observed after 19 h of irradiation. Kinetics of degradation of rivaroxaban was not impacted by the nature of the aqueous matrix while photosensitization from nitrate ions was observed for dabigatran and apixaban dissolved in a mineral water. The photosensitized reactions were limited in the tested river water (Isle River, Périgueux, France) certainly due to the hydroxyl radical scavenging effect of the dissolved organic matter. The study of photoproduct structures allowed to identify two compounds for dabigatran. One of them is the 4-aminobenzamidine while the second one is a cyclization product. In the case of rivaroxaban, as studied by very high field NMR, only one photoproduct was observed i.e. a photoisomer. Finally, seven photoproducts were clearly identified from the degradation of apixaban under simulated solar light
Dynamic and differential expression of the gonadal aromatase during the process of sexual differentiation in a novel transgenic cyp19a1a -eGFP zebrafish line
No full textAccepted manuscriptIn zebrafish, there exists a clear need for new tools to study sex differentiation dynamic and its perturbation by endocrine disrupting chemicals. In this context, we developed and characterized a novel transgenic zebrafish line expressing green fluorescent protein (GFP) under the control of the zebrafish cyp19a1a (gonadal aromatase) promoter. In most gonochoristic fish species including zebrafish, cyp19a1a, the enzyme responsible for the synthesis of estrogens, has been shown to play a critical role in the processes of reproduction and sexual differentiation. This novel cyp19a1a-eGFP transgenic line allowed a deeper characterization of expression and localization of cyp19a1a gene in zebrafish gonads both at the adult stage and during development. At the adult stage, GFP expression was higher in ovaries than in testis. We showed a perfect co-expression of GFP and endogenous Cyp19a1a protein in gonads that was mainly localized in the cytoplasm of peri-follicular cells in the ovary and of Leydig and germ cells in the testis. During development, GFP was expressed in all immature gonads of 20 dpf-old zebrafish. Then, GFP expression increased in early differentiated female at 30 and 35 dpf to reach a high GFP intensity in well-differentiated ovaries at 40 dpf. On the contrary, males consistently displayed low GFP expression as compared to female whatever their stage of development, resulting in a clear dimorphic expression between both sexes. Interestingly, fish that undergoes ovary-to-testis transition (35 and 40 dpf) presented GFP levels similar to males or intermediate between females and males. In this transgenic line our results confirm that cyp19a1a is expressed early during development, before the histological differentiation of the gonads, and that the down-regulation of cyp19a1a expression is likely responsible for the testicular differentiation. Moreover, we show that although cyp19a1a expression exhibits a clear dimorphic expression pattern in gonads during sexual differentiation, its expression persists whatever the sex suggesting that estradiol synthesis is important for gonadal development of both sexes. Monitoring the expression of GFP in control and exposed-fish will help determine the sensitivity of this transgenic line to EDCs and to refine mechanistic based-assays for the study of EDCs. In fine, this transgenic zebrafish line will be a useful tool to study physiological processes such as reproduction and sexual differentiation, and their perturbations by EDCs
Observations of ammonia in the Ile-de-France region using IASI and CrIS
No full textInternational audienceThe Paris megacity experiences strong particulate matter (PM) pollution episodes in springtime (March-April). Exposure to such particles is harmful to human and can lead to cardiovascular and respiratory diseases. Large parts of the particles composition are ammonium sulfate and nitrate which are produced from ammonia (NH3) used as fertilizer during spreading practices and transported from the surrounding areas to Paris.Using space-borne observations of NH3 from the Infrared atmospheric sounding interferometer (IASI) and the Cross-Track Infrared Sounder (CrIS) instruments, regional pattern of NH3 variabilities (seasonal and inter- annual) have been provided in the Paris region. The PM observations are derived from the Airparif network.NH3 and PM enhancements and variabilities in Ile-de-France are studied from 2008 to 2017 to understand the development of the PM pollution caused from NH3 emissions in springtime. Atmospheric measurements of NH3 and PM have also been compared to a regional atmospheric model - CHIMERE - to discuss our knowledge about NH3 emissions and PM formation mechanisms in the atmosphere
Consequences of a 12-mm diameter high pressure gas release on a buried pipeline. Experimental setup and results
No full textInternational audienceWhen considering the transportation of gas through high pressure pipeline and associated permitting, the 12-mm diameter breach is one of those commonly considered as accidental scenarios and the associated consequences must to be calculated for determining the required safety measures. Up to now this “12-mm” scenario was modeled at the convenience of each risk analyst with no certitude on the real behaviour of the gas in the soil for these types of releases. To obtain concrete information on the “12-mm” scenario considered as the sizing event for safety distances associated to a little breach due to corrosion for instance, AIR LIQUIDE, ENGIE, NATIONAL GRID, PETROBRAS and TIGF decided to launch in 2013 a JIP (Joint Industrial Program) named “CRATER”. The aim of this project was to improve knowledge on the consequences of leakages occurring on buried high pressure pipes, and to determine what were their behaviour and their impact on the soil – i.e. crater formation, or not, according to release parameters – in order to use the appropriate methodology for risk and consequences assessment. Thus by changing several parameters – like nature of gas, initial gas pressure, type of soil … – the threshold between crater formation and gas dispersion in the soil following such leakages was investigated (specifically for methane and hydrogen, flammable and light gases). INERIS was chosen as subcontractor to perform nearly-full scale tests on its experimental site in order to collect reference data, understand phenomena and correctly assess the gas behaviour for accurate risk evaluation