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SENSE_Root architecture in plant microbe interactions
No full textThis dataset contains information about the root architecture traits of Arabidopsis plantlets, colonized or not by paraburkholderia xenovorans LB400, under control conditions and under PCB stres
Replication data for "The effects of Thymus capitatus essential oil topical application on milk quality: a systems biology approach", Skin swabs Dataset
No full textThe Replication data for "The effects of Thymus capitatus essential oil topical application on milk quality: a systems biology approach", Skin swabs Dataset contains 64 compressed fastq format files, representing the forward and reverse reads of 32 skin swab samples belonging to the MILKQUA project that were sequenced in the V3-V4 regione of the 16S rRNA gene. Skin swabs were collected by rubbing sterile swabs on the surface of cow udder, aiming to collect the microbial population present on the udder of cows massaged in that site with Thymus capitatus essential oil (TCEO), to unravel its effects on the microbiota.
Guidelines to file naming:
Cows were identified with the code CT or TR depending on the belonging to the Control or Treated group respectively, followed by an increasing group-dependent numbering.
In the cases of two quarters considered on the same animal, the samples were differentiated adding a letter to the ID (A and B).
the samples were collected on day 0, 7, 21 and 28, referred as T0, T7, T21 and T28: therefore, samples were named specifying the timepoint followed by the number
samples were paired end sequenced, which produced forward and reverse reads, which were identified with R1 and R2 respectively.
Example: CT1A_timepoint0_R1.fastq.gz is a sample belonging to control group, cow number 1 quarter A, collected at T0, and this file is the forward read.
All files are in fastq format (.fastq) and compressed (.gz).<b
SENSE_WP1_T1.5_Evaluate the effect of flavonoids in bacteria phenotypes_biofilm formation_v.01
No full textThis dataset contains information about favonoid-mediated effect on biofilm formation by the PCB-degrading strain Paraburkholderia xenovorans LB40
Replication data for: "Hybrid Catalysts from Copper Biosorbing Bacterial Strains and Their Recycling for Catalytic Application in the Asymmetric Addition Reaction of B2(pin)2 on α,β-Unsaturated Chalcones"
No full textThis dataset includes data related to the characterization of bacterial strains able to transform heavy metals
Replication Data forCombined Ferritin Nanocarriers with ICG for Effective Phototherapy Against Breast Cancer
No full textThis dataset contains raw data from "Combined Ferritin Nanocarriers with ICG for Effective Phototherapy Against Breast Cancer" by Sitia L. et al
Data associated with interpolated maps, one for each combination of parameters, for "Modelling the timing of migration of a partial migrant bird using ringing and observation data: a case study with the Song Thrush in Italy"
No full textThis dataset includes the results (rds format) associated with the interpolated maps (0.5° x 0.5° latitude per longitude resolution). One file is created for each combination of parameters used in the model
Replication Data for: "Conjugal plasmid transfer in the plant rhizosphere in the One Health context"
No full textThe dataset contains data related to the publication by Riva et al. entitled "Conjugal plasmid transfer in the plant rhizosphere in the One Health context" published on Frontiers in Microbiology in 2024 (https://doi.org/10.3389/fmicb.2024.1457854). Dataset refers to the data about the ability of strain Klebsiella variicola EEF15 RIF-R to colonize the lettuce rhizosphere and leaf endosphere. Data refer to bacterial counts on selective plates. Spreadsheet and readme files are available
SENSE_WP1_ T1.5_Evaluate the effect of identified root exudates in bacteria phenotypes_bphA induction_v.01
No full textThis dataset contains data about the relative expression level of the bphA gene in Pseudomonas JAB1 in presence of scopoleti
Work data for Environmental Scanning Electron Microscopy for evaluation of swelling and dissolution of pure peptide fibers
No full textThis folder contains Environmental Scanning Electron Microscopy images of pure peptide electrospun fibers. This technique enables the observation and quantification of fiber morphological changes due to increased humidity (wetting, dissolution, swelling). By gradually increasing the water vapor pressure in the ESEM chamber, the humidity was raised accordingly. ESEM provided real-time imaging of the fibers during this humidity rise. Once the humidity reached 100%, stability tests, such as monitoring dissolution, were performed. This experiment was performed on the peptides DOPA-Phe(4F)-Phe(4F)-OMe and DOPA-Phe(4F)-Phe(4F)-Arg-Gly-Asp-CONH2
replication data for: "Stereochemical Behavior of Pyrrolo-Pyrazole Peptidomimetics Promoting Phase-Selective Supramolecular Organogels"
No full textSupramolecular gels were developed by taking advantage of an assembly of small dipeptides containing pyrrolo-pyrazole scaffolds. The dipeptides were prepared through a robust and ecofriendly synthetic approach from the commercially available starting materials of diazoalkanes and maleimides. By playing with the functionalization of the scaffold, the choice of the natural amino acid, and the stereochemistry, we were able to obtain phase-selective gels. In particular, one peptidomimetic showed gelation ability and thermoreversibility in aromatic solvents at very low concentrations. Rheology tests showed a typical viscoelastic solid profile, indicating the formation of strong gels that were stable under high mechanical deformation. NMR studies were performed, allowing us to determine the conformational and stereochemical features at the base of the supramolecular interactions