London School of Hygiene & Tropical Medicine

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    2671 research outputs found

    ciarajudge/EpiFusion_PublicationRepo

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    Repository to fully reproduce the results of the manuscript "EpiFusion: joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering"

    Rapid Assessment of Avoidable Blindness Dataset: Mali, Koulikoro (2024)

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    Anonymous participant level dataset including variables for visual acuity, spectacle use, lens status, cause of vision impairment, cataract surgical history, barriers to cataract surgery and population count data for five-year age-gender groups for males and females 50 years and older

    Clinical data on 29 patients with leprosy

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    A dataset containing clinical information related to the treatment of 29 patients with leprosy. This data supports the publication, "A retrospective cohort study of monthly rifampicin, ofloxacin and minocycline in the management of leprosy at the Hospital for Tropical Diseases, London, United Kingdom". All files are held in Figshare

    Household fuel use and adverse pregnancy outcomes

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    This prospective follow up was conducted in Eastern Ethiopia with the aim detecting adverse pregnancy outcomes to improve maternal and child health. The data contained maternal sociodemographic characteristics, maternal obstetrics and health conditions during pregnancy and child birth information as well as child related data

    S1 Table for "Assessing vulnerability for future Zika virus outbreaks using seroprevalence data and environmental suitability maps"

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    The dataset generated from extracting data from seroprevalence studies and values from associated maps (minimal data set for analysis)

    Additional file 1 of Information needs of ethnically diverse, vaccine-hesitant parents during decision-making about the HPV vaccine for their adolescent child: a qualitative study

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    Topic guide for performing interviews with parents. Published to support the paper, "Information needs of ethnically diverse, vaccine-hesitant parents during decision-making about the HPV vaccine for their adolescent child: a qualitative study"

    WGS An melas Bijagos Guinea Bissau

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    Anopheles melas is an understudied malaria vector with a potential role in malaria transmission on the Bijagós Archipelago of Guinea-Bissau. This study presents the first whole genome sequencing and population genetic analysis for this species from the Bijagós. The raw sequence data generated and analysed during this study are available in the European Nucleotide Archive (project ID: PRJEB75927, accession numbers ERS20101387 to ERS20101416)

    Replication Data for: Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya

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    This is a replication dataset for the manuscript titled:Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya. SARS-CoV-2 virus continues to mutate leading to emerging variants that escape immunity previously raised by vaccination and/or infection by earlier variants. We used genomic data to identify the most prevalent Kenyan and global variants between May 2023 and March 2024 and performed pseudoviruses neutralization assays on samples collected from two health demographic surveillance systems in Kenya (n=54), for vaccine induced immunity against circulating variants EG.5.1, FY.4 19, BA.2.86, JN.1, and JN.1.4. As a comparator, we used natural wildtype infection samples (n=20) collected in 2020 at the onset of the pandemic and confirmed to be PCR positive for SARS-CoV-2. We also assessed the effects of different doses of vaccine, age, sex, and type of vaccine on antibody-neutralizing titers

    Assessment of infrastructure, behaviours, and user satisfaction of guardian waiting shelters for secondary level hospitals in southern Malawi. S2 Checklist

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    Key Informant Interview (KII) guide, quantitative data and other supporting files for: "Assessment of infrastructure, behaviours, and user satisfaction of guardian waiting shelters for secondary level hospitals in southern Malawi"

    epiparameterDB: Database of Epidemiological Parameters

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    A data package containing a database of epidemiological parameters. It stores the data for the 'epiparameter' R package. Epidemiological parameter estimates are extracted from the literature

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