2671 research outputs found
Sort by
Additional file 3 of The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health
No full textTyphiNET downloadable line list (csv format) of all genome-derived data presented in TyphiNET
hubverse-org/hubEnsemblesManuscript
No full textThe R package hubEnsembles provides a flexible framework for ensembling various types of predictions, including point estimates and probabilistic predictions
Eyedeet/measles_vaccination_scenarios
No full textCode used to run age-stratified, metapopulation compartmental models using odin.dust with different scenarios for vaccination uptake. These models are used to analyse the dynamics of measles outbreaks in England between 2010 and 2019, and to simulate changes in vaccination coverage between 2010 and 2019. The generated simulations can me found in the models Output/models folder, figures are saved in the in the Figures folder and summary tables are saved in the Output folder. The R folder contains all the scripts and functions
ecthomson/Contamination-Filter
No full textThis Bash script identifies identical viral reads across samples from the same sequencing run to detect potential cross-contamination. It processes .sam files, extracting and analyzing mapped sequences to identify commonalities that indicate contamination
Data and code from "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever"
No full textData, scripts, and key outputs for "The overlapping global distribution of dengue, chikungunya, Zika and yellow fever"
jodyphelan/pathogen-profiler
No full textThe Pathogen-Profiler library gives access to classes and functions to create a profiling tool to look for mutations in NGS data. It is used as the scaffolding for TBProfiler
Dataset: Early life serological profiles and the development of natural protective humoral immunity to Streptococcus pyogenes in a high burden setting
No full textThe data contained in this repository is publicly available in order to reproduce analyses in manuscript entitled: Early life serological profiles and the development of natural protective humoral immunity to Streptococcus pyogenes in a high burden setting. Data contained within are limited and fully anonymised demographic data, antibody measurement data and observational clinical and microbiological data
Coding matrix for: "Beyond ‘Go and bring your husband’: a COM-B guided qualitative study on the barriers to male involvement in antenatal care in Bamenda Health District, Cameroon"
No full textSupporting files for the publication, "Beyond ‘Go and bring your husband’: a COM-B guided qualitative study on the barriers to male involvement in antenatal care in Bamenda Health District, Cameroon". This includes a coding matrix of anonymised quotes from interviews, a data codebook, interview topic guides, and other supporting documents
AmpliconTyper
No full textTool for genotyping Oxford Nanopore amplicon sequencing data with trained models for S. Typhi and S. Paratyphi A
