1,784,474 research outputs found
Uji Daya Hambat Ekstrak Kulit Buah Manggis (Garcinia mangostana L.) Terhadap Pertumbuhan Candida albicans Secara In Vitro (Studi Eksperimen di Laboratorium Mikrobiologi Farmasi Universitas Muslim Indonesia 2017)
No full textLatar Belakang: Kesehatan gigi dan mulut penting untuk diperhatikan. Berdasarkan provinsi tahun 2013 yang mempunyai masalah gigi dan mulut yang cukup tinggi (>35%) adalah provinsi Sulawesi Selatan, Kalimantan Selatan dan Sulawesi Tengah dengan EMD 10,3%, 8%, dan 6,4%. Candida albicans merupakan flora normal yang dapat ditemukan dalam rongga mulut yang sehat, tetapi dapat menjadi pathogen apabila didukung oleh kondisi penurunan respon imun. Kulit buah manggis memiliki efek sebagai antifungi karena mempunyai kandungan aktif berupa alkaloida, saponin, flavonoid, tanin, triterpenoid dan steroid. Tujuan: Mengetahui daya hambat ekstrak kulit buah manggis (Garcinia mangotana L.) terhadap pertumbuhan Candida albicans secara in vitro. Metode: Penelitian ini adalah Eksperimental Laboratoris dengan desain post test only control group design. Sampel penelitian adalah biakan murni jamur Candida albicans di Laboratorium Mikrobiologi Farmasi UMI. Hasil: Hasil ekstrak kulit buah manggis konsentrasi 0,1% 0,5% 2,5% dan 12,5% mempunyai daya antifungi terhadap Candida albicans. Hasil uji One Way Anova didapatkan nilai p=0,000 (
CGATOxford/UMI-tools 0.5.2
No full text<ul>
<li>Adds options to specify a delimiter for a cell barcode or UMI which should be concatenated + options to specify a string splitting the cell barcode or UMI into multiple parts, of which only the first will be used. Note, this options will only work if the barcodes are contained in the BAM tag - if they were appended to the read name using <code>umi_tools extract</code> there is no need for these options. See #217 for motivations:<ul>
<li><code>--umi-tag-delimiter=[STRING]</code> = remove the delimeter STRING from the UMI. Defaults to <code>None</code></li>
<li><code>--umi-tag-split=[STRING]</code> = split UMI by STRING and take only the first portion. Defaults to <code>None</code></li>
<li><code>--cell-tag-delimiter=[STRING]</code> = remove the delimeter STRING from the cell barcode. Defaults to <code>None</code></li>
<li><code>--cell-tag-split=[STRING]</code> = split cell barcode by STRING and take only the first portion. Defaults to "_" to deal with 10X GEMs</li>
</ul>
</li>
<li>Reduced memory requirements for <code>count --wide-format-cell-counts</code>: #222</li>
<li>Debugs issues with <code>--bc-pattern2</code>: #201, #221 </li>
<li>Updates documentation: #204, #210, #211 - Thanks @kohlkopf, @hy09 & @cbrueffer </li>
</ul>
JuanFSantana/UMI-deduplication: UMI-deduplication
No full text<p><strong>Full Changelog</strong>: https://github.com/JuanFSantana/UMI-deduplication/commits/v1.0.0</p>
UMI-tools_pipelines: Publication release
No full textPipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publicatio
CGATOxford/UMI-tools: 1.1.5
No full text<h3>New features</h3>
<ul>
<li>Enables read suffixes to be removed from single end data: @IanSudbery in https://github.com/CGATOxford/UMI-tools/pull/591. See https://github.com/CGATOxford/UMI-tools/issues/580 for motivating issue</li>
<li>Adds a script to prepare <code>umi_tools dedup</code> output for use with <code>RSEM</code>: @IanSudbery in https://github.com/CGATOxford/UMI-tools/pull/609. See https://github.com/CGATOxford/UMI-tools/issues/465 and https://github.com/CGATOxford/UMI-tools/issues/607 for motivating issues</li>
</ul>
<h3>Bugfix</h3>
<ul>
<li>Fix lack of help messages in 1.1.4 by @IanSudbery in https://github.com/CGATOxford/UMI-tools/pull/586</li>
<li>Fixes read suffix line end: @IanSudbery in https://github.com/CGATOxford/UMI-tools/pull/611</li>
</ul>
<h3>Documentation</h3>
<ul>
<li>Fixed docs for dedup stats filenames: @msto in https://github.com/CGATOxford/UMI-tools/pull/604</li>
</ul>
<h3>New Contributors</h3>
<ul>
<li>@msto made their first contribution in https://github.com/CGATOxford/UMI-tools/pull/604</li>
</ul>
<p><strong>Full Changelog</strong>: https://github.com/CGATOxford/UMI-tools/compare/1.1.4...1.1.5</p>
CGATOxford/UMI-tools: 1.1.3
No full textNew features
Adds '--umi-separator' option to umi_tools extract to specify UMI separator. Thanks @opplatek (#548)
Optimisation
Speeds up read pair mate writing. Significant benefit for transcriptome alignments (#543)
Bugfix
Handles umi_tools group output to tsv with --per-contig when no gene tags are present. Thanks @mfansler & @akmorrow13 (#577)
Fixes syntax warning in extract.py. Thanks @rajivnarayan (#558)
Improves error message for incorrect command line input. Thanks @epruesse (#506 & #537
UMI-tools v0.0.10
No full text<p>Improve memory performance for UMI extraction from paired end reads</p>
kmooog/UMI-amplicon: v1.0
No full textThis version was used for the UMI project's 721 SSU rRNA amplicon data analysis
UMI-teknologiat STEM-opetuksessa (eng. UMI -technologies in STEM education)
No full textThe paper introduce how UMI -technologies can be applied in lower secondary level education. (In Finnish
kmooog/UMI-amplicon: v1.0
No full text<p>This version was used for the UMI project's 721 SSU rRNA amplicon data analysis.</p>
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