1,721,028 research outputs found
Going Beyond Counting First Authors in Author Co-citation Analysis
Get PDFThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Get PDF“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Get PDFWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dynamic Studies through Control of Relaxation in NMR Spectroscopy
No full textIn numerous biological processes that constitute the base of living organisms, protein function is fundamentally related to internal dynamics occurring on μs-ms time scales that can give rise to chemical exchange contributions to relaxation. In a heteronuclear two-spin system (e.g., 1H-15N), correlated motions of the two nuclei induce cross-relaxation between multiple-quantum coherences that can be quantified using new Heteronuclear Double Resonance (HDR) techniques. An analytical model describes the effect of an applied radio-frequency field on the relaxation rate of interest in the presence of fast exchange, providing accurate information on the kinetics of correlated processes. Numerical simulations and experimental results confirm the validity of the model. HDR and more conventional relaxation dispersion techniques are used to characterize the internal dynamics in several biological systems. Motions on similar time scales are detected in the two different binding surfaces in human ubiquitin and in the linker between them (Phe45), suggesting the presence of a possible global motion. Additional applications of HDR give insights into the dynamics occurring in the KID-binding domain (KIX) of the CREB-binding protein. We identified the presence of exchange processes, faster than the one reported by Konrat and coworkers, outside the main helices of KIX. These fast motions are most likely the sign of conformational disorder within the native state, which may promote the transition to the unfolded ensemble. A combination of 15N relaxation rates and magnetization transfer rates are used to provide a qualitative characterization of internal dynamics in Engrailed 2. While contribution of exchange processes in the ms time scale are small, fluctuations at sub-ms timescales are found to occur both in the unstructured part that contains important binding sites for other transcription factors, and at a few restricted locations in the structured homeodomain. Such motions are characterized by 15N R1ρ relaxation dispersion. Our results reveal that the hexapeptide motif is characterized by complex dynamics that may be linked to its physiological function. Moreover, the time scale of motions in the homeodomain is reasonably close to that of the hexapeptide region. It is therefore tempting to suppose that transient contacts occur between the structured and unstructured regions.LRM
Dispelling the Myths Behind First-author Citation Counts
Get PDFWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
Improving Sensitivity in Solid State NMR : Surfaces, Quadrupolar Nuclei and Dynamic Nuclear Polarization
No full textSensitivity in Nuclear Magnetic Resonance (NMR), especially in solid-state NMR, has always been a challenging and important issue and thus a motivation for new developments. The magnetic field B0, the gyromagnetic ratios of the observed nuclei, as well as the preparation of the samples are important for optimizing the sensitivity. Often only a small amount of sample is available and the nuclei of interest have low gyromagnetic ratios, which makes solid-state NMR extremely time consuming and, in some cases, practically impossible. In addition, strong interactions can cause extensive line-broadening, thus making it difficult to excite or detect high resolution spectra. In this thesis two main aspects concerning sensitivity in solid-state NMR are addressed. The first part reveals the difficulties of the excitation and detection of quadrupolar nuclei, in particular of the highly abundant nucleus nitrogen-14, and presents an indirect detection method combined with a more efficient excitation and reconversion scheme using Delays Alternating with Nutations for Tailored Excitation (DANTE). The second part presents a new experimental set-up for Dynamic Nuclear Polarization (DNP), which has evolved into a very successful method at the Ecole Polytechnique Fédérale de Lausanne. It is shown in this work that the DNP method combined with solid-state NMR allows one to enhance NMR signal intensities by one or two orders of magnitude, thus opening the doors towards a great variety of new exciting applications. In solids spinning at the magic angle, the indirect detection of single-quantum (SQ) and double-quantum (DQ) 14N spectra (I = 1) via spy nuclei S = 1/2 such as protons can be achieved in the manner of heteronuclear single- or multiple-quantum correlation (HSQC or HMQC) spectroscopy. The coherence transfer is achieved by recoupling the heteronuclear dipolar interactions, i.e., with symmetry-based sequences. The line broadening caused by the homogeneous decay of the transverse terms of the spy nuclei S can be reduced by implementing suitable dipolar decoupling schemes during the evolution period. The lack of efficiency of the excitation and reconversion can be overcome by replacing the conventional rectangular pulses applied to the nitrogen-14 nuclei by a train of short rotor-synchronized pulses in the manner of DANTE. These pulse trains excite a large number of crystallites in the sample uniformly and allow one to efficiently excite magnetization over large bandwidths, limited only by the quality factor of the probe. When combining N interleaved DANTE schemes, obtained by applying N pulses per rotor period, leading to so-called "DANTE-N" sequences, one obtains methods that greatly improve the uniformity of the excitation and lead to higher signal intensity in less rotor periods than basic DANTE. Applications to nitrogen-14 with fast magic angle spinning (typically νrot ≥ 60 kHz), using either direct or indirect detection, are backed up by simulations that provide insight into the properties of basic and interleaved DANTE sequences. DNP exploits the polarization transfer, driven by microwave irradiation, from unpaired electrons, usually carried by polarization agents such as TEMPO or TOTAPOL, to the target nuclei. This transfer results in enhancements of the signal-to-noise ratios and thus opens many new possibilities for challenging samples. In this thesis the experimental requirements are demonstrated and important parameters like the temperature dependence are investigated. Various sample preparation methods are proposed, e.g., by attaching the radical directly to the molecules under investigation, instead of preparing a solution that should forma glass upon freezing. The combination of indirect detection of 14N with DNP improves the signal-to-noise ratio dramatically and shortens the recovery delay between subsequent experiments. Besides samples of biological interest, it was also shown that the NMR signals of molecules on surfaces of various materials can be greatly enhanced by DNP. A characterization of the distribution of surface binding modes and interactions in a series of functionalized materials could be demonstrated. The bonding topology of functional groups in materials obtained via a sol-gel process and in materials prepared by post-grafting reactions could be identified and compared. Furthermore, the remarkable gain in time afforded by DNP allows the facile acquisition of two-dimensional correlation spectra. The surfaces were characterized by transferring the polarization from protons to other nuclei such as 13C, 29Si and 27Al by means of cross-polarization.LRM
Boosting parameter inference with stochastic models using molecular dynamics and high-performance computing
No full textInvited seminar at ENS, ParisParameter inference is a fundamental problem in data-driven modeling. The aim is to find a so-called posterior distribution of model parameters that are able to explain observed data and can be used for making probabilistic predictions. We propose a novel, exact, very efficient and highly parallelizable Hamiltonian Monte Carlo approach for generating posterior parameter distributions, for stochastic models calibrated to measured time-series. The algorithm is inspired by re-interpreting the posterior distribution as a statistical mechanics partition function of an object akin to a polymer, whose dynamics is confined by both the model and the measurements
- …
