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    From innate immune activation to DNA damage repair : Mechanistic insights into cellular defense pathways

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    Innate immunity, the body’s first line of defense against pathogens, and DNA repair, a vital mechanism for maintaining genome stability, are essential for cellular homeostasis, damage repair, and protection against disease development. Despite ongoing research, the precise mechanisms that regulate these responses, and how they influence each other, remain largely unknown. This study seeks to explore factors that modulate innate immune responses and DNA damage repair and provide a deeper understanding of how these pathways interact to coordinate cellular defenses. Through four different projects, this research provides insights into mechanisms underlying the regulation of innate immunity and DNA damage response. In Project I we show that HUWE1, a protein previously described to be involved in DNA damage repair is also a negative regulator of the endolysosomal system. By regulating viral degradation within the endosome, HUWE1 contributes to antiviral innate defense. In Project II we reveal how AIM2-like receptors, known to alarm the immune system in response to cytosolic DNA, also bind nuclear DNA and impede DNA damage repair by interfering with chromatin decompaction. This study shows that AIM2-like receptor deficiency protects against radiation-induced tissue injury and uncovers AIM2-like receptors as potential targets against genotoxic tissue damage. In Project III we describe a novel role of aspirin, a commonly used anti-inflammatory drug, in facilitating DNA repair. Through acetylation of histones and chromatin remodeling aspirin promotes recruitment of DNA repair machinery to DNA damage sites. In Project IV we show that membrane vesicles secreted by gut microbiota prime the innate immune system, which in turn protects the host against viral infections. Research presented in this thesis provides a deeper understanding of how host genetic traits and environmental factors such as gut microbiota regulate the host’s defense systems. Moreover, the projects described herein demonstrate how molecules, traditionally associated with either innate immunity or DNA repair, have dual functions that bridge these two fundamental biological processes. By identifying mechanisms bridging these responses, the findings described in this thesis shed light on how an imbalance in these defense systems contributes to the development of pathology and provides the basis for identifying new therapeutic strategies for treatments of diseases associated with inflammation and DNA damage

    From innate immune activation to DNA damage repair : Mechanistic insights into cellular defense pathways

    No full text
    Innate immunity, the body’s first line of defense against pathogens, and DNA repair, a vital mechanism for maintaining genome stability, are essential for cellular homeostasis, damage repair, and protection against disease development. Despite ongoing research, the precise mechanisms that regulate these responses, and how they influence each other, remain largely unknown. This study seeks to explore factors that modulate innate immune responses and DNA damage repair and provide a deeper understanding of how these pathways interact to coordinate cellular defenses. Through four different projects, this research provides insights into mechanisms underlying the regulation of innate immunity and DNA damage response. In Project I we show that HUWE1, a protein previously described to be involved in DNA damage repair is also a negative regulator of the endolysosomal system. By regulating viral degradation within the endosome, HUWE1 contributes to antiviral innate defense. In Project II we reveal how AIM2-like receptors, known to alarm the immune system in response to cytosolic DNA, also bind nuclear DNA and impede DNA damage repair by interfering with chromatin decompaction. This study shows that AIM2-like receptor deficiency protects against radiation-induced tissue injury and uncovers AIM2-like receptors as potential targets against genotoxic tissue damage. In Project III we describe a novel role of aspirin, a commonly used anti-inflammatory drug, in facilitating DNA repair. Through acetylation of histones and chromatin remodeling aspirin promotes recruitment of DNA repair machinery to DNA damage sites. In Project IV we show that membrane vesicles secreted by gut microbiota prime the innate immune system, which in turn protects the host against viral infections. Research presented in this thesis provides a deeper understanding of how host genetic traits and environmental factors such as gut microbiota regulate the host’s defense systems. Moreover, the projects described herein demonstrate how molecules, traditionally associated with either innate immunity or DNA repair, have dual functions that bridge these two fundamental biological processes. By identifying mechanisms bridging these responses, the findings described in this thesis shed light on how an imbalance in these defense systems contributes to the development of pathology and provides the basis for identifying new therapeutic strategies for treatments of diseases associated with inflammation and DNA damage

    Going Beyond Counting First Authors in Author Co-citation Analysis

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    The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed

    Variations on the Author

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    “Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship

    Appropriate Similarity Measures for Author Cocitation Analysis

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    We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis

    Dispelling the Myths Behind First-author Citation Counts

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    We conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more sophisticated methods

    Author Index

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    koamabayili/VECTRON-author-checklist: VECTRON author checklist

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    We have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
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