1,720,995 research outputs found
Historic ocean acidification of Loch Sween revealed by correlative geochemical imaging and high-resolution boron isotope analysis of Boreolithothamniom cf. soriferum
No full textOcean Acidification (OA) arises from the increase in atmospheric carbon dioxide concentration following the industrial revolution. The ecological and socio-economic consequences of OA were first identified around 10–15 years ago but remain poorly understood. This is particularly true in coastal regions where local processes can have dramatic consequences on pH trends through time, obscuring and compounding the long-term effects from rising atmospheric CO2. Here we explore the possibility of generating long records of coastal ocean pH using the skeletons of widely distributed coralline algae (CA). The skeletons of these slow growing (<1 mm/year) taxa often contain micron-scale heterogeneities, making sampling for high-resolution climate reconstructions using bulk sampling techniques difficult. Here we use laser ablation coupled to inductively coupled plasma mass spectrometers to generate high-resolution 2D images of the element/calcium ratios and boron isotope composition (δ11B) of a sample of Boreolithothamniom cf. soriferum from Loch Sween in Scotland, UK where we have been monitoring temperature since 2004 and pH during 2014. By carefully correlating the geochemical images with a scanning electron microscopy image we can segment them to remove the marginal portions of the skeleton, isolating the central growth axis to generate an age model and growth rate. The δ11B-pH is significantly elevated above the seawater pH in Loch Sween (8.4 to 8.9 vs. 7.9 to 8.1) consistent with other CA that show internal pH elevation. On a seasonal scale, internal pH is negatively correlated with temperature and also exhibits a long-term decline. By removing this temperature effect, internal pH can be correlated to seawater pH during the 2014 monitoring period allowing us to reconstruct a seawater acidification trend from 2004 to 2018 of -0.018 pH units per year, 10x higher than open ocean trends but consistent with contemporaneous monitoring efforts of UK coastal waters. Reconstructed aqueous CO2 suggests that prior to ∼2008 Loch Sween was a sink of CO2 but after this date, particularly during the early summer, it was a substantial CO2 source. Comparison of reconstructed aqueous CO2 with a record of calcification rate of our sample of Boreolithothamniom cf. soriferum suggests this acidification and associated rise in local seawater pCO2 may have freed this sample from carbon limitation leading to a recent increase in calcification
Synthetic and practical reconstructions of SST and seawater pH using the novel multiproxy SMITE method
No full textGeochemical proxies of sea surface temperature (SST) and seawater pH (pH
sw) in scleractinian coral skeletons are valuable tools for reconstructing tropical climate variability. However, most coral skeletal SST and pH
sw proxies are univariate methods that are limited in their capacity to circumvent non-climate-related variability. Here we present a novel multivariate method for reconstructing SST and pH
sw from the geochemistry of coral skeletons. Our Scleractinian Multivariate Isotope and Trace Element (SMITE) method optimizes reconstruction skill by leveraging the covariance across an array of coral elemental and isotopic data with SST and pH
sw. First, using a synthetic proxy experiment, we find that SMITE SST reconstruction statistics (correlation, accuracy, and precision) are insensitive to noise and variable calibration period lengths relative to Sr/Ca. While SMITE pH
sw reconstruction statistics remain relative to δ
11B throughout the same synthetic experiment, the magnitude of the long-term trend in pH
sw is progressively lost under conditions of moderate-to-high analytical uncertainty. Next, we apply the SMITE method to an array of seven coral-based geochemical variables (B/Ca, δ
11B, Li/Ca, Mg/Ca, Sr/Ca, U/Ca & Li/Mg) measured from two Bermudan Porites astreoides corals. Despite a <3.5 year calibration period, SMITE SST and pH
sw estimates exhibit significantly better accuracy, precision, and correlation with their respective climate targets than the best single- and dual-proxy estimators. Furthermore, SMITE model parameters are highly reproducible between the two coral cores, indicating great potential for fossil applications (when preservation is high). The results shown here indicate that the SMITE method can outperform the most common coral-based SST and pH
sw reconstructions methods to date, particularly in datasets with a large variety of geochemical variables. We therefore provide a list of recommendations and procedures for users to begin implementing the SMITE method as well as an open-source software package to facilitate dissemination of the SMITE method.</p
Laser ablation mass spectrometry blast through detection in R
No full textRationale: organisms that grow a hard carbonate shell or skeleton, such as foraminifera, corals or molluscs, incorporate trace elements into their shell during growth that reflect the environmental change and biological activity they experienced during life. These geochemical signals locked within the carbonate are archives used in proxy reconstructions to study past environments and climates, to decipher taxonomy of cryptic species and to resolve evolutionary responses to climatic changes.Methods: here, we use laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) as a time-resolved acquisition to quantify the elemental composition of carbonate shells and skeletons. We present the LABLASTER (Laser Ablation BLASt Through Endpoint in R) package, which imports a single time-resolved LA-ICP-MS analysis, then detects when the laser has ablated through the carbonate as a function of change in signal over time and outputs key summary statistics. We provide two examples within the package: a fossil planktic foraminifer and a tropical coral skeleton.Results: we present the first R package that automates the selection of desired data during data reduction workflows. This is achieved by automating the detection of when the laser has ablated through a sample using a smoothed time series, followed by removal of off-target data points. The functions are flexible and adjust dynamically to maximise the duration of the desired geochemical target signal, making this package applicable to a wide range of heterogenous bioarchives. Visualisation tools for manual validation are also included.Conclusions: LABLASTER increases transparency and repeatability by algorithmically identifying when the laser has either ablated fully through a sample or across a mineral boundary and is thus no longer documenting a geochemical signal associated with the desired sample. LABLASTER's focus on better data targeting means more accurate extraction of biological and geochemical signals
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Geochemical proxies for deep-sea temperature and nutrient content in cold-water bamboo corals
No full textThe impact of warming, acidification, and deoxygenation on deep-sea environments is a growing concern. Historical records are sparse, particularly at high latitudes, making climate change projections challenging. Indirect proxies, such as trace element composition of marine carbonates, such as coral skeletons, can offer an alternative method to fill data gaps but have not been realised. Here, using Laser Ablation Triple-Quadrupole Inductively Coupled Plasma Mass Spectrometry (LA-QQQ-ICP-MS), we examined micrometre-scale element variation within and between individual colonies of the bamboo coral Keratoisis sp. obtained from the Eastern Canadian Arctic. These data are used to assess the influence of biological variability on geochemical tracers for reconstructing past environmental conditions (temperature: Mg/Ca, Li/Mg, Sr/Ca, Ba/Ca, U/Ca; [Ba]SW: Ba/Ca). We place these data into context, based on a survey of literature data, using refined calibrations for high-Mg calcitic Octocorals. We find reproducible (2σ relative coefficient of variation) values of Mg/Ca (3%) and Ba/Ca (6%) along the radial growth axis of all colonies and internodes of Keratoisis sp., indicating that these signals are likely suitable for environmental reconstructions. After revising the available multi-taxa calibrations for Mg/Ca (0.316 ± 0.026 °C/mmol/mol, R2 = 0.87, p < 0.001) and Ba/Ca ([Ba/Ca μmol/mol] = 0.148 ± 0.005 [BaSW nmol/kg], R2 = 0.97, p < 0.001), we show that vital effects within and among Keratoisis sp. colonies strongly influence reconstructed temperature and [Ba]SW, but this can be somewhat mitigated by combining multiple internode transects from one colony into a single composite series. Despite the ontogenetic variability, all colonies reveal a gradual deep-water cooling trend since the early 21st century and synchronised, multi-year spikes in Ba/Ca (and hence [Ba]SW) that suggest substantial and coherent barium inputs to the seafloor. Our study confirms the reliability of Mg/Ca and Ba/Ca proxies in high-Mg bamboo corals for detecting multi-annual temperature and seawater barium variations in cold-water environments, but further investigation into micro-scale element behaviour influenced by biotic processes in these corals is needed to enhance confidence in reconstructions at finer spatial and temporal resolutions. We conclude that employing empirical calibrations based on multi-taxa approaches can increase the certainty of capturing regional changes in the environment more accurately than a single species calibration, while leveraging multiple element series to account for biological-induced variability improves single colony reconstructions.<br/
2D geochemical imaging of biogenic marine carbonates using LA-TOF-ICP-MS at 1 and 2 μm pixel resolution
No full textMany applications at the forefront of the study of the chemical composition of marine carbonates require in-situ micro-scale geochemical imaging. Such analyses are, however, challenging, requiring analytical techniques that are either expensive with limited accessibility (e.g. synchrotron X-Ray spectroscopy and secondary ion mass spectrometry), or time-consuming and able to only analyse a limited range of elements (e.g. electron microprobe). Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) as a tool for generating 2D images has grown in popularity, yet many analytical issues remain when generating high-spatial resolution geochemical images using this approach. Here we employ the imageGEO193 (ESL) fast wash-out laser ablation system coupled to the Nu Instruments Vitesse Time-of-Flight (TOF) ICP mass spectrometer, with its near-full mass spectra capabilities, to generate 2D geochemical images of a range of biogenic carbonates at ≤2 μm pixel resolution (pixel widths of either 1 or 2 μm) and at an unprecedented speed (200 pixels/s). We demonstrate sensitivity of ∼100 cps/μg g
−1 at low mass rising to ∼1000 cps/μg g
−1 at high mass based on analyses of reference materials JCp-1 (carbonate) and NIST SRM612 (silicate) with 1 μm wide square laser beams, and accuracy of ±7 % for elements present at concentrations >0.5 μg g
−1 based on analyses of carbonate reference material JCt-1. By applying our quantitative method to a range of biogenic carbonates (coral skeletons, coralline algae, foraminifera), we demonstrate that considerable but coherent micron-scale compositional variability is the norm for nearly all quantified elements, including: Mg, Sr, Ba and U. This approach therefore has great potential to provide valuable insights into biomineralisation mechanisms and “vital effects”, ultimately facilitating more robust reconstructions of past environments.</p
Century-long records of sedimentary input on a Caribbean reef from coral Ba/Ca ratios
No full textCoral reef ecosystems are delicately balanced and are thus prone to disruption by stressors such as storms, disease, climate variability and natural disasters. Most tropical coral populations worldwide are now in rapid decline owing to additional anthropogenic pressures, such as global warming, ocean acidification and a variety of local stressors. One such problem is the addition of excess sediment and nutrients flux to reefs from increased soil erosion from land use changes. Here we present century-long Ba/Ca records from two Siderastrea siderea colonies as a proxy for local riverine discharge and sediment flux to the southern Mesoamerican Barrier Reef System (MBRS). The coral colonies have linear extension trends, which can be seen as a first-order indicator for coral health and response. The coral colony that exhibits a decline in linear extension rate from the forereef of the MBRS, mainly receives riverine input from Honduras, whilst the coral from the backreef, which does not exhibit a decline in extension rate, primarily receives riverine input from more sparsely populated regions of Belize. Coral Ba/Ca increased (>70%) through time in the forereef colony, while the backreef colony showed little long-term increase in Ba/Ca over the last century. Our results suggest that increasing sediment supply may have played a role in the decline of forereef skeletal extension in the southernmost MBRS region, likely stemming from increasing land-use changes in Honduras
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