1,720,986 research outputs found
Image based aberration retrieval using helical point spread functions
No full textA practical method for determining wavefront aberrations in optical systems based on the acquisition of an extended, unknown object is presented. The approach utilizes a conventional phase diversity approach in combination with a pupil-engineered, helical point spread function (PSF) to discriminate the aberrated PSF from the object features. The analysis of the image’s power cepstrum enables an efficient retrieval of the aberration coefficients by solving a simple linear system of equations. An extensive Monte Carlo simulation is performed to demonstrate that the approach makes it possible to measure low-order Zernike modes including defocus, primary astigmatism, coma, and trefoil. The presented approach is tested experimentally by retrieving the two-dimensional aberration distribution of a test setup by imaging an extended, unknown scene.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.ImPhys/Computational ImagingImPhys/Imaging Physic
Single emitter localization analysis in the presence of background
No full textLocalization microscopy for imaging at the nano-scale relies on the quality of fitting the emitter positions from the measured light spots. The type and magnitude of the noise in the detection process, the background light level and the Point Spread Function model that is used in the fit are of paramount importance for the precision and accuracy of the fit. We present several developments on the computational methods and performance limits of single emitter localization, targeting specifically these three aspects.ImPhys/Imaging PhysicsApplied Science
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Optical trapping at low numerical aperture
Full text linkA theory of optical trapping at low Numerical Aperture (NA) is presented. The theory offers an analytical description of the competition between the stabilizing gradient and destabilizing scattering force. The trade-off can be characterized by a single dimensionless trapping parameter, which increases with bead size to wavelength ratio ?/?, m, NA and refractive index contrast m and decreases with NA. The gradient force dominates for small trapping parameters, the scattering force for large trapping parameters. The potential well depth, maximum forces and trap stiffness as a function of the three parameters (?/?, m, NA ) can be mapped onto universal functions of the trapping parameter. These functions do not depend on any free parameter. The universal well depth and maximum force curves match with numerical results based on the exact multipole expansion of the optical trapping force. The paraxial limit of low NA is relevant for compact optical tweezers based on Optical Pickup Units known from optical data storage.Imaging Science & TechnologyApplied Science
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Analyzing single molecule emission patterns using Deep Learning
No full textThe time taken to generate a super-resolution image and the quality of the final synthetic image depends on the performance of the localization algorithm which is used in the localization microscopy pipeline. The most precise and accurate algorithms are mostly iterative and they take a long time to generate the localization list while the faster ‘one-shot algorithms’ are not very accurate and precise. A deep learning method smNet (single-molecule Net) was developed by Zhang et al which was claimed to perform one-shot localization with precision close to the theoretical limit and very accurately, along with performing aberration estimation and dipole-emitter orientation angle estimation. The deeplearning model smNet was trained either by augmenting experimental data or using simulated data generated with an erroneously simplified simulation model and a phase retrieval method. The purpose of this work was to characterize the performance of smNet when it was trained with simulated images generated using an accurate vector model for a range of physical conditions. Along with the characterization of smNet’s performance in doing 3D localization and aberration estimation with the accurate vector model, a pipeline was also designed which made the training process of smNet more efficient and computationally cheaper while performing accurate and precise 3D localization and aberration estimation.The pipeline was designed to implement the concept of simulator learning where a smNet model could be trained on simulated data and used to perform 3D localization and aberration estimation directly on experimental data without any retraining or domain adaptation techniques.Biomedical Engineering | Medical Physic
Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model
Full text linkWe introduce a method for determining the position and orientation of fixed dipole emitters based on a combination of polarimetry and spot shape detection. A key element is an effective Point Spread Function model based on Hermite functions. The model offers a good description of the shape variations with dipole orientation and polarization detection channel, and provides computational advantages over the exact vectorial description of dipole image formation. The realized localization uncertainty is comparable to the free dipole case in which spots are rotationally symmetric and can be well modeled with a Gaussian. This result holds for all dipole orientations, for all practical signal levels, and for defocus values within the depth of focus, implying that the massive localization bias for defocused emitters with tilted dipole axis found with Gaussian spot fitting is eliminated.IST/Imaging Science and TechnologyApplied Science
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
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