83 research outputs found
Cyclic Conversions in the Nitrogen Cycle
No full textThe cyclic nature of specific conversions in the nitrogen cycle imposes strict limitations to the conversions observed in nature and explains for example why anaerobic ammonium oxidation (anammox) bacteria can only use nitrite – and not nitrate – as electron acceptor in catabolism, and why nitrite is required as additional electron donor for inorganic carbon fixation in anabolism. Furthermore, the biochemistry involved in nitrite-dependent anaerobic methane oxidation excludes the feasibility of using nitrate as electron acceptor. Based on the cyclic nature of these nitrogen conversions, we propose two scenarios that may explain the ecological role of recently discovered complete ammonia-oxidizing (comammox) Nitrospira spp., some of which were initially found in a strongly oxygen limited environment: (i) comammox Nitrospira spp. may actually catalyze an anammox-like metabolism using a biochemistry similar to intra-oxic nitrite-dependent methane oxidation, or (ii) scavenge all available oxygen for ammonia activation and use nitrate as terminal electron acceptor. Both scenarios require the presence of the biochemical machinery for ammonia oxidation to nitrate, potentially explaining a specific ecological niche for the occurrence of comammox bacteria in nature.BT/Environmental Biotechnolog
Shape memory origami for haptics: Exploring the potential of a material system based on SMAs to generate haptic feedback for visually impaired people
No full textThis project explores the potential of a material system based on SMAs that generates haptic feedback for Visually Impaired People (VIPs). Since VIPs rely more than others on tactile information, there is a need for more natural and unintrusive haptic devices as the commonly used electromechanical actuations are often perceived as intrusive and less acceptable than non-vibrating feedback. SMAs emerge as a promising solution to address these challenges effectively, due to their inherent ability to create silent, organic sensations, while being lightweight, thin, and flexible (Cruz et al., 2018). The aim of this project is to investigate the unique characteristics of SMAs and translate this into an integrated material system that could inspire designers to adopt these materials and revolutionize tactile experiences. The process had an explorative nature and included a research, form configuration and embodiment phase. Most current haptic systems based on SMAs have the limitation of small actuation ranges and/or difficulties in integrating them in soft material systems. Therefore, in this project, a soft integrated material system is designed that shows the potential of incorporating SMA and SE flat springs into an origami-paper textile to create haptic feedback. By using the combination of the SMA-SE flat springs, an easy integration of the wires in the paper-textile is enabled and a two-way actuation is created with a displacement of around 16%. Through the use of the origami structure, the two-dimensional shape change of the SMA spring is transformed in a three-dimensional shape change creating rich tactile feedback that can be perceived passively as well as actively. The sensations generated by the material system were easily perceived with the hands and the movement was characterized as natural, calm and gentle by sighted participants. This demonstrates that there is a potential for creating an integrated material system based on flat springs SMAs that generated haptic feedback for VIPs in a natural and new way. Additionally, based on all these findings, a guideline was developed for SMA wires with the aim to give an overview of all steps involved when designing a material system based on SMAs.Integrated Product Desig
Complete ammonia oxidation: an important control on nitrification in engineered ecosystems?
No full textContains fulltext :
195181.pdf (Publisher’s version ) (Open Access)01 april 201
Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus
No full textNitrite-oxidizing bacteria (NOB) have conventionally been regarded as a highly specialized functional group responsible for the production of nitrate in the environment. However, recent culture-based studies suggest that they have the capacity to lead alternative lifestyles, but direct environmental evidence for the contribution of marine nitrite oxidizers to other processes has been lacking to date. We report on the alternative biogeochemical functions, worldwide distribution, and sometimes high abundance of the marine NOB Nitrococcus. These largely overlooked bacteria are capable of not only oxidizing nitrite but also reducing nitrate and producing nitrous oxide, an ozone-depleting agent and greenhouse gas. Furthermore, Nitrococcus can aerobically oxidize sulfide, thereby also engaging in the sulfur cycle. In the currently fast-changing global oceans, these findings highlight the potential functional switches these ubiquitous bacteria can perform in various biogeochemical cycles, each with distinct or even contrasting consequences
In search of Comammox in oxygen limiting conditions
No full textComammox bacteria are capable of catalysing the full nitrification pathway – oxidation of ammonium to nitrate – and have been encountered in many ecosystems recently (Lawson & Lücker, 2018). What the ecological role of comammox bacteria is in hypoxic enrichment cultures remains unclear. Based on the thermodynamics and biochemistry of known nitrogen cycle conversion, we propose that comammox is oxidizing ammonium to nitrite with both oxygen and nitrate as electron acceptor in hypoxic condition. Our hypothesis suggests that when comammox cooperates with anammox, they can harvest most energy per unit of oxygen supplied. We tried to cultivate bacteria toward a community of anammox and comammox consortium by limiting the oxygen and supplying ammonium and nitrate. Although the predicted optimal state has not been achieved during this work, we did observe that the community indeed developed towards higher consumption of ammonium under limited oxygen supply.Life Science and Technology (LST
Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia
No full textDissimilatory nitrate reduction to ammonia (DNRA) is a common biochemical process in the nitrogen cycle in natural and man-made habitats, but its significance in wastewater treatment plants is not well understood. Several ammonifying Trichlorobacter strains (former Geobacter) were previously enriched from activated sludge in nitrate-limited chemostats with acetate as electron (e) donor, demonstrating their presence in these systems. Here, we isolated and characterized the new species Trichlorobacter ammonificans strain G1 using a combination of low redox potential and copper-depleted conditions. This allowed purification of this DNRA organism from competing denitrifiers. T. ammonificans is an extremely specialized ammonifier, actively growing only with acetate as e-donor and carbon source and nitrate as e-acceptor, but H2 can be used as an additional e-donor. The genome of G1 does not encode the classical ammonifying modules NrfAH/NrfABCD. Instead, we identified a locus encoding a periplasmic nitrate reductase immediately followed by an octaheme cytochrome c that is conserved in many Geobacteraceae species. We purified this octaheme cytochrome c protein (TaNiR), which is a highly active dissimilatory ammonifying nitrite reductase loosely associated with the cytoplasmic membrane. It presumably interacts with two ferredoxin subunits (NapGH) that donate electrons from the menaquinol pool to the periplasmic nitrate reductase (NapAB) and TaNiR. Thus, the Nap-TaNiR complex represents a novel type of highly functional DNRA module. Our results indicate that DNRA catalyzed by octaheme nitrite reductases is a metabolic feature of many Geobacteraceae, representing important community members in various anaerobic systems, such as rice paddy soil and wastewater treatment facilities.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.BT/Environmental BiotechnologyBT/Industriele Microbiologi
Studies on ascertaining death of slaughter pigs following electrical stunning – use of an automated hot-water-stimulation-process and evaluation of spontaneous movements along the debleeding line
No full textModerne Schlachtsysteme tragen ein Risiko lebende Tiere weiterzuverarbeiten (SCHÜTTE und BOSTELMANN 2001, TROEGER 2005 und TROEGER und MEILER 2006). Gründe für dieses ernst zu nehmende tierschutzrelevante Problem sind eine ineffiziente Betäubung und/oder der Mangel an einer ausreichenden und schnellen Entblutung der Schweine. Die europäische Kommission hat 2009 die Verordnung (EG) Nr. 1099/2009 über den Schutz von Tieren zum Zeitpunkt der Tötung implementiert (ANON. 2009). Die Studie schafft Grundlagen um eine automatisierte Methode zu entwickeln, welche die Abwesenheit von Lebenszeichen von Schlachtschweinen verifiziert. Die Hypothese hierbei ist die Annahme, dass Schweine, die auf einen schmerzhaften Reiz wie heißes Wasser mehrere Minuten nach der Entblutung reagieren mit dem Risiko eines zumindest teilweise funktionierenden Gehirns behaftet sind.
Die Studie fand an drei kommerziellen Schlachthöfen in Deutschland statt, die verschiedene elektrische Betäubungs- (Kopf-zu-Herz-Durchströmung) und Stechverfahren verwendeten. Insgesamt wurden am Schlachtband 5.301 Mastschweine im Hauptversuch untersucht und mittels Videokameras aufgezeichnet. Um die Abwesenheit von Lebenszeichen am Ende der Nachentblutestrecke, das heißt vier bis fünf Minuten nach Entblutestich, zu überprüfen wurde ein Heißwasser-Reiz mit 65 °C verwendet. Die Dauer der Reizapplikation betrug fünf bzw. 15 Sekunden. Eine automatisierte Reizapplikations-Anlage, erbaut von der Firma BANSS Schlacht- und Fördertechnik GmbH (Biedenkopf), induzierte den Stimulus vor allem im Bereich des Gesichts der Schweine. Als Referenz zu den Beobachtungen der Bewegungen während der Reiz-Applikation wurden Gehirnnerven-Reflexe (Corneal- und Lidschlussreflexe) und Reaktionen auf einen Kniff in die Nasenscheidewand klinisch untersucht. Schweine mit positiven Befunden wurden mittels Bolzenschuss nachbetäubt bzw. getötet.
Die Sensitivität des Heißwasser-Tests lag bei 99 %. Eines von 75 Tieren wies positive Corneal- und Lidschlussreflexe auf, obwohl dieses Schwein auf den Heißwasser-Reiz nicht reagiert hatte. Jedoch konnten deutlich erkennbare Spontanbewegungen jenes Tieres bereits vorher beobachtet werden. Die Spezifität des Heißwasser-Tests lag bei 98 %. Beinah jedes Schwein mit negativen Gehirnnerven-Befunden blieb während der Reizapplikation unauffällig.
3,8 % (n = 199) der untersuchten Schweine zeigten eine Reaktion auf den Heißwasser-Reiz. Es war kein Unterschied zwischen dem fünf bzw. 15 Sekunden anhaltendem Reiz zu ermitteln. Neben einer ineffizienten Entblutung kann die reversible Betäubung als ein weiterer möglicher Grund für dieses Ergebnis genannt werden. Die Elektrische Betäubung ist reversibel, solange kein Herzkammerflimmern sicher ausgelöst wird (HOENDERKEN et al. 1980 und VOGEL et al. 2010). Es kann geschlussfolgert werden, dass die elektrische Kopf-zu-Herz-Durchströmung, die in den hier dargestellten Schlachtbetrieben verwendet wurde, nicht immer zum Herzkammerflimmern geführt hatte.
Die Anzahl der Reaktionen der Schweine auf das heiße Wasser war begrenzt. 92 % der Schweine, die den Kopf während der Reizapplikation geschüttelt hatten und 78 % derer, die eine aufrichtende Bewegung gezeigt hatten, wiesen mindestens einen positiven Gehirnnerven-Befund auf. Auffälligkeiten in den Vordergliedmaßen korrelierten zu 59 % und das Muster “Maul öffnen” zu 52 % mit positiven Gehirnnerven-Befunden. Bewegungen aus dem Becken bzw. den Hintergliedmaße heraus waren nur zu 21 % mit positiven Gehirnnerven-Befunden verbunden. Bei der Betrachtung der Bewegungsmusterkombinationen stellte die Autorin fest, dass nahezu keine Reaktion missachtet werden sollte. Lediglich das Muster „ausschließliche Bewegungen Becken/Hintergliedmaße“ korrelierte in keinem der 59 Fälle mit positiven Gehirnnerven-Befunden. Dieses Ergebnis deckt sich mit den Aussagen von GRANDIN (2013) und den Mitarbeitern des bsi Schwarzenbek (ANON. 2013a), die darauf hinwiesen, dass der caudale Körperabschnitt elektrisch betäubter Schlachtschweine zur Einschätzung ihres möglicherweise vorhandenen Bewusstseins keine Relevanz besitzt.
Während der Untersuchungen wurden außerdem Spontanbewegungen der Schlachtschweine zwischen dem Stechen und dem Heißwasser-Test analysiert. Jedes Tier, das eine Reaktion auf die Heißwasser-Reiz-Applikation zeigte und mindestens einen positiven Befund in der Gehirnnerven-Untersuchung aufwies, hatte vorher das Spontanbewegungsmuster „Maul öffnen“ durchgeführt. Um dem Überwachungs- und Schlachthofpersonal zu vermitteln, welche Spontan-bewegungsmuster bzw. reizinduzierten Reaktionen bei der Beobachtung der Nachentblutestrecke entscheidend sind, wurden entsprechende Arbeitsanweisungen entwickelt. Bereits vorhandene Literatur wurde hierbei mit eingearbeitet (ANIL 1991, ATKINSON et al. 2012 und EFSA 2013).
Als eine wirksame Lösung um den sicheren Tod von Schweinen vor weiteren Schlachtarbeiten sicherzustellen, scheint es sinnvoll entsprechende Spontanbewegungen zu beachten und die Implementierung einer abschließenden Untersuchung mittels eines Heißwasser-Reiz-Tests am Ende der Nachentblutestrecke zu verwirklichen. Selbstverständlich sollten weiterhin die Betäubung und Entblutung der Tiere möglichst sicher kontrolliert werden. Für die Nachbetäubung bzw. Tötung der betroffenen Schweine wird der Einsatz eines Bolzenschussgerätes von der EFSA (2004), dem bsi Schwarzenbek und dem Max Rubner-Institut empfohlen.Modern slaughter regimes carry a risk of live animals being further processed (SCHÜTTE and BOSTELMANN 2001, TROEGER 2005 and TROEGER and MEILER 2006). This serious animal welfare problem may result from inefficient stunning and/or lack of complete and fast exsanguination of the pigs. In 2009, the European Commission implemented Council Regulation (EC) No. 1099/2009 on the protection of animals at the time of killing (ANON. 2009). The study lays groundwork for developing an automated method to verify the absence of signs of life in slaughter pigs. The hypothesis is that pigs that react to a painful stimulus, like hot water, several minutes after debleeding have the risk of a partly functional brains. The study took place at three commercial abattoirs in Germany using different electrical stunning (head-to-body) and bleeding methods.
In the main part of the study a total of 5,301 finishing pigs was examined and videotaped on line. As a stimulus to check the absence of signs of life right before further processing, namely four to five minutes after sticking, a hot-water-stimulus at 65 °C was utilized. The residence time of the stimulus amounted either five or 15 seconds. An automated construction, built by the company BANSS Schlacht- und Fördertechnik GmbH (Biedenkopf/Germany), implemented the stimulus mainly within the faces of the pigs. As a reference to the observation of movements during the stimulation, brain stem reflexes (corneal and palpebral) and reactions to a nasal septum pinch were clinically examined. Pigs with any positive result were restunned or killed using a captive bolt device.
The sensitivity of the hot-water-test was determined at 99 %. One out of 75 animals exhibited positive corneal- and palpebral-reflexes although this one pig did not show any reaction to the hot water stimulation. However, obvious spontaneous movements of this animal could be observed beforehand. The specificity of the hot-water-test was determined at 98 %. Almost every pig with negative brain stem results remained motionless during the stimulation.
A share of 3.8 % (n = 199) of pigs showed movements during the hot water exposure. Es war kein Unterschied zwischen dem fünf bzw. 15 Sekunden anhaltendem Reiz zu ermitteln. No difference was estimated between the residence times of five versus 15 seconds. Besides inefficient bleeding one possible reason for this result is reversible stunning. Electrical stunning is reversible, unless effective cardiac arrest is caused (HOENDERKEN et al. 1980 and VOGEL et al. 2010). It may be assumed that after head-to-body electrical stunning used by the abattoirs displayed in this study cardiac arrest was not always achieved.
The number of individual responses was limited. 92 % of pigs that shook their heads during the stimulation and 78 % that showed a righting reflex exhibited at least one positive brain stem result. Noticeable front leg activity correlated to 59 % and the movement “opening of the mouth” to 52 % with positive brain stem results. Hips or hind leg movements were only associated with positive brain stem results in 21 % of the cases. By looking at the combinations of movements the author found that nearly no reaction should be ignored. Merely exclusive hips or hind leg movements in none of the 59 cases correlated with brain stem results. This finding is supported by the statements made by GRANDIN (2013) and the staff of the bsi Schwarzenbek (ANON. 2013a), pointing out that the caudal body part of electrically stunned slaughter pigs possesses no relevance to evaluating possible consciousness.
During the study additionally spontaneous movements of the slaughter pigs were analyzed between sticking and the hot water device. Every animal that eventually showed a reaction to the hot water stimulation and exhibited at least one positive result during the brain stem examination had shown spontaneous mouth opening. Appropriate working instructions for the monitoring personnel and the slaughter staff, in order for them to realize which spontaneous movements or stimulus induced reactions during the observations of the debleeding line are relevant, were designed. For this available expertise has additionally been taken into account (ANIL 1991, ATKINSON et al. 2012 and EFSA 2013).
As a suitable solution for ascertaining death before further processing, the idea of paying attention to slaughter pigs that obviously show signs of recovery and the implementation of a “last check” by using a hot water test right before further processing seems reasonable. Of course the stunning and exsanguination should still be safely monitored. The use of a captive bolt device to restun or kill “suspicious” pigs is recommended by the EFSA (2004), the bsi Schwarzenbek and the Max Rubner-Institute
- …
