122,139 research outputs found
Robledo-Ruiz et al. 2021 Molecular Ecology Resources (Supporting data)
No full textSupporting data for the manuscript: Robledo-Ruiz, D. A., Pavlova, A., Clarke, R. H., Magrath, M. J. L., Quin, B., Harrisson, K. A., Gan, H. M., Low, G. W., & Sunnucks, P. (2021). A novel framework for evaluating in situ breeding management strategies in endangered populations. Molecular Ecology Resources.Feel free to contact me for a copy of the paper. You can find it here: https://doi.org/10.1111/1755-0998.13476. Preliminary version (open access) here: https://www.researchgate.net/publication/353388070_A_novel_framework_for_evaluating_in-situ_breeding_management_strategies_in_endangered_populations Each zipped folder contains the data files and scripts used for the steps in the analysis:0_SNPcalling_rawDArTs.zip - SNP calling from raw DArT reads. Final SNP dataset is called "p1r9_ld_50kb_1kb_removed_missing_0.61_no_sexlinked_HW.recode.vcf"1_Sex_check_DArT_files.zip - Check assigned sex using DArT data2_ParentageAnalysis_COLONY.zip - Parentage Analysis using COLONY2 software3_Kinship_Inbreeding_COANCESTRY.zip - Calculation of kinship and inbreeding using COANCESTRY software4_MSI_PMx.zip - Tranformation of kinship to Mate Suitability Index (MSI) using PMx software5_Kinship_ActualPairs.zip - Identification of kinship for actual pairs 5_MSI_ActualPairs.zip - Identification of MSI for actual pairs6_Kinship_BestPairs.zip - Simulation of the kinship of best pairs6_MSI_BestPairs.zip - Simulation of the MSI of best pairs7_Kinship_RandomPairs.zip - Simulation of the kinship of random pairs7_MSI_RandomPairs.zip - Simulation of the MSI of random pairs8_Kinship_IdealPairs.zip - Simulation of the kinship of ideal pairs8_MSI_IdealPairs.zip - Simulation of the MSI of best ideal9_Kinship_Management1Pairs.zip - Simulation of the kinship of management pairs9_MSI_Management1Pairs.zip - Simulation of the MSI of management pairs10_Kinship_FinalComparison.zip - Statistical analysis comparing kinship10_MSI_FinalComparison.zip - Statistical analysis comparing MSI11_PCA.zip - Principal Coordinates Analysis12_Kinship_Management2Pairs.zip - Simulation of the kinship of management 2 pairs12_MSI_Management2Pairs.zip - Simulation of the MSI of management 2 pairs</div
Interview with Iván Díaz Robledo
No full textIván Díaz Robledo of the Nortec Collective talks about the electronic music scene in Baja California, including experimental music, DJ-ing, collaborations between musicians, parties, and the local drug culture.https://scholarworks.utrgv.edu/alejandromadrid/1005/thumbnail.jp
Supporting data for “Chromosome-length genome assembly and linkage map of a Critically Endangered Australian bird: the helmeted honeyeater”. Robledo-Ruiz et al. (2022)
No full textSupporting data for the manuscript:
Robledo-Ruiz D. A., Gan H. M., Kaur P., Dudchenko O., Weisz D., Khan R., Lieberman Aiden E., Osipova E., Hiller M., Morales H. E., Magrath M. J. L., Clarke R. H., Sunnucks P. & Pavlova A. (2022) Chromosome-length genome assembly and linkage map of a Critically Endangered Australian bird: the helmeted honeyeater.Data usage:Helmeted honeyeater (Lichenostomus melanops cassidix) nuclear genome annotationGFF and GP files containing the predictive gene annotation of the Helmeted honeyeater nuclear genome.Helmeted_honeyeater_annotation.gff.gzHelmeted_honeyeater_annotation.gp.gzHelmeted honeyeater mitochrondrial genomeFASTA file containing the assembly of the Helmeted honeyeater mitochondrial genome.Helmeted_honeyeater_mitogenome.fastaHelmeted honeyeater mitochrondrial genome annotationTBL file containing the predictive gene annotation of the Helmeted honeyeater mitochondrial genome.Helmeted_honeyeater_mitogenome_annotation.tblHelmeted honeyeater mitochrondrial genome treeNeighbour-joining tree and subtree in newick format of the helmeted honeyeater mitogenome to closest matches based on BLASTn analysis.Helmeted_honeyeater_mitogenome_tree.nwkHelmeted_honeyeater_mitogenome_subtree.nwkHelmeted honeyeater linkage mapPedigree-based linkage map of the Helmeted honeyeater estimated using 53,111 SNPs with Lep-MAP3. Includes chromosomes, sex-averaged genetic distances (cM), sex-specific genetic distances (cM), sex-averaged recombination rates (cM/Mb) and sex-specific recombination rates (cM/Mb). We make available the original genetic map and the map for which negative recombination rates were converted to zeros.Helmeted_honeyeater_geneticMap.txtHelmeted_honeyeater_geneticMap_notConverted.txtHelmeted honeyeater genetic map with sliding window recombination rateGenetic map with sex-averaged genetic distances (cM) and recombination rates (cM/Mb) for non-overlapping windows of width 50Kb, 100Kb and 200Kb inferred from smoothing the Marey Map produced by Lep-MAP3.Helmeted_honeyeater_recombinationRate_50Kb.txtHelmeted_honeyeater_recombinationRate_100Kb.txtHelmeted_honeyeater_recombinationRate_200Kb.txtHelmeted honeyeater BUSCO completeness resultsFull results of BUSCO completeness (including summary table, full results table, and table of missing genes) for the draft genome, the chromosome-length genome, and the annotation of the chromosome-length genome.Helmeted_honeyeater_BUSCO_DraftGenome.zipHelmeted_honeyeater_BUSCO_ChrLengthGenome.zipHelmeted_honeyeater_BUSCO_annotation.zip0.GeneticMap_rawDArTs_HiC_HelmetedHoneyeater_Robledo-Ruiz-etal.docxDocument with the process done to produce the linkage and recombination maps for the helmeted honeyeater, including the scripts used.1.Pedigree.zipFolder containing the pedigree file used as input for Lep-MAP3, and the files and scripts used to assembled it.2.Lep-MAP3_Genotypes.zipThe genotype posterior probabilities file and the called genotypes file obtained with Lep-MAP3.3.Lep-MAP3_LOD.zipThe files produced by Lep-MAP3 modules SeparateChromosomes2 and JoinSingles2All testing different LOD scores. Scripts and plots produces are also included.4.LASTZ_Mapping_ZF.zipScripts, output and plots from the synteny analysis by aligning the helmeted honeyeater genome to zebra finch, collared flycatcher and superb fairy-wren genomes using LASTZ.5.MareyMap_LG.zipFiles and scripts from processing the Marey maps per Linkage Group.</div
Supporting data for Robledo-Ruiz et al. (2023)
No full textSupporting data for manuscript:
Robledo-Ruiz D. A., Austin L., Amos J. N., Castrejón-Figueroa J., Magrath M. J. L., Sunnucks P. & Pavlova A. (submitted) Easy-to-use R functions to separate reduced-representation genomic datasets into sex-linked and autosomal loci, and conduct sex-assignment.
Data usage:
The three directories have the datasets and scripts for the eastern yellow robin (EYR), yellow-tufted honeyeater (YTH) and Leadbeater's possum (LBP), respectively.
*_Results.Rmd
R script to process outputs from 'standard regime' and 'removing sex-linked loci' regime.
filtering_regime_using_filter.sex.linked
Folder with the script and input data required for 'Removing sex-linked loci' filtering regime.
filtering_regime_notusing_filter.sex.linked
Folder with the script and input data required for 'Standard' filtering regime.
filter.sex.linked_requirements
Folder with the script and input data required to replicate the analyses that investigated the minimum requirements for functions filter.sex.linked and infer.sex
filter.sex.linked_validation
Folder with the script and input data required to replicate the analyses that validated the results of function filter.sex.linked</p
FONDO EMILIO ROBLEDO CORREA
No full textFiguras, tablasEl proceso archivístico del Fondo Emilio Robledo Correa se llevó a cabo mediante el convenio con el Programa de Historia de la Universidad de Caldas, Si bien no se tiene conocimiento de una fecha exacta en la que el fondo fue intervenido por primera vez, se evidenció que no se tuvo en algunos de los procesos archivísticos métodos como la foliación, orden cronológico de los documentos y la óptima preservación del material documental. Dando así como resultado una intervención que constó de constantes reordenamientos y revisiones, culminando en un inventario de primer nivel, el cual consistió de cuatro fases: categorización por temática, ordenamiento cronológico, foliación y rotulación.The archival process of the Emilio Robledo Correa Fund was carried out through an agreement with the History Program of the University of Caldas. Although there is no knowledge of an exact date on which the fund was intervened for the first time, it was evident that In some of the archival processes, methods such as foliation, chronological order of documents and optimal preservation of documentary material were not taken. Resulting in an intervention that consisted of constant rearrangements and revisions, culminating in a first-level inventory, which consisted of four phases: categorization by theme, chronological ordering, foliation and labeling.ÁREA DE IDENTIFICACIÓN / Código(s) de referencia / Titulo / Emilio Robledo Correa / Fecha(s) / Nivel de descripción / Inventario de primer nivel / Volumen y soporte de la unidad de descripción / ÁREA DE CONTEXTO / ÁREA DE CONTENIDO Y ESTRUCTURA.PregradoHistoriador(a
Supporting data for Robledo-Ruiz et al. (2023)
No full text<p>Supporting data for manuscript:</p>
<p>Robledo-Ruiz D. A., Austin L., Amos J. N., Castrejón-Figueroa J., Magrath M. J. L., Sunnucks P. & Pavlova A. (submitted) <strong>Easy-to-use R functions to separate reduced-representation genomic datasets into sex-linked and autosomal loci, and conduct sex-assignment.</strong></p>
<p><br></p>
<p>Data usage:</p>
<p>The three directories have the datasets and scripts for the eastern yellow robin (EYR), yellow-tufted honeyeater (YTH) and Leadbeater's possum (LBP), respectively.</p>
<p><br></p>
<p><strong>*_Results.Rmd</strong></p>
<p>R script to process outputs from 'standard regime' and 'removing sex-linked loci' regime.</p>
<p><br></p>
<p><strong>filtering_regime_using_filter.sex.linked</strong></p>
<p>Folder with the script and input data required for 'Removing sex-linked loci' filtering regime.</p>
<p><br></p>
<p><strong>filtering_regime_notusing_filter.sex.linked</strong></p>
<p>Folder with the script and input data required for 'Standard' filtering regime.</p>
<p><br></p>
<p><strong>filter.sex.linked_requirements</strong></p>
<p>Folder with the script and input data required to replicate the analyses that investigated the minimum requirements for functions <em>filter.sex.linked</em> and <em>infer.sex</em></p>
<p><br></p>
<p><strong>filter.sex.linked_validation</strong></p>
<p>Folder with the script and input data required to replicate the analyses that validated the results of function <em>filter.sex.linked</em></p>
Elliptic curves, modular forms, and their L-functions
No full textMany problems in number theory have simple statements, but their solutions require a deep understanding of algebra, algebraic geometry, complex analysis, group representations, or a combination of all four. The original simply stated problem can be obscured in the depth of the theory developed to understand it. This book is an introduction to some of these problems, and an overview of the theories used nowadays to attack them, presented so that the number theory is always at the forefront of the discussion. Lozano-Robledo gives an introductory survey of elliptic curves, modular forms, and L-functions. His main goal is to provide the reader with the big picture of the surprising connections among these three families of mathematical objects and their meaning for number theory. As a case in point, Lozano-Robledo explains the modularity theorem and its famous consequence, Fermat's Last Theorem. He also discusses the Birch and Swinnerton-Dyer Conjecture and other modern conjectures. The book begins with some motivating problems and includes numerous concrete examples throughout the text, often involving actual numbers, such as 3, 4, 5, \frac{3344161}{747348}, and \frac{2244035177043369699245575130906674863160948472041} {8912332268928859588025535178967163570016480830}. The theories of elliptic curves, modular forms, and L-functions are too vast to be covered in a single volume, and their proofs are outside the scope of the undergraduate curriculum. However, the primary objects of study, the statements of the main theorems, and their corollaries are within the grasp of advanced undergraduates. This book concentrates on motivating the definitions, explaining the statements of the theorems and conjectures, making connections, and providing lots of examples, rather than dwelling on the hard proofs. The book succeeds if, after reading the text, students feel compelled to study elliptic curves and modular forms in all their glory
STRATIGRAPHY OF THE LOWER PERMIAN HUECO GROUP IN THE ROBLEDO MOUNTAINS, DONA ANA COUNTY, NEW MEXICO
No full textMost of the Paleozoic strata exposed in the Robledo Mountains, Dona Ana County, New Mexico have long been referred to the Hueco Formation divided into four informal members. We re-visit stratigraphy by elevating Hueco to group status in the Robledo Mountains and naming its constituent formations (ascending order) the Shalem Colony, Community Pit, Robledo Mountains, and Apache Da m Formations. The Shalem Colony Formation is about 183 m thick and mostly calcirudites, calcarenites and grainstones. The Community Pit Formation is about 61 m thick and mostly packstones and micrites. The 125-m thick Robledo Mountains Formation is packstones, marine shale and red-bed sandstones and siltstones. The Apache Da m Formation is about 122 m thick and mostly alga l plate limestones. Biostratigraphically useful fossils from the Robledo Mountains Formation indicate a late Wolfcampian age
[V]aron d[e] desseos : en que se declaran las tres vias de la vida espiritual : purgatiua, illuminatiua y vnitiua...
No full textDatos entre corchetes, de área de tít. y pie de imp., completados con: Toribio Medina, México, II, 563Sign.: [parágrafo]>64>4>445841, B-L>8, I>4418<Sign.: Error de fol., de h. 37 pasa a 37 y de h. 100 a 10
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