1,720,961 research outputs found
Development of polymeric drug delivery systems for biotech products
Full text linkSince the early 80’s the forward steps in genetics and proteomics, have led a particular interest to biotech products, such as DNA and proteins. Although difficult, their large-scale production enabled the therapeutic use of this compounds. Proteins and DNA sequences can be very interesting therapeutic molecules owing to their high selectivity/affinity for the receptor or the specific site of action.
Unfortunately, some issues still limit their pharmaceutical use, such as the susceptibility to enzymatic degradation, rapid renal clearance and immunogenicity.
To overcome these limitations, many researchers are seeking solutions in the field of drug delivery systems (DDSs). In this respect, many systems have been developed and conjugation with PEG (polyethylene glycol) can be considered one of the leading approaches. PEGylation brings to the conjugated molecule great solubility and stability to proteolytic digestion, furthermore it reduces the tendency to aggregate and reduces the immunogenicity. Thanks to these advantages and the particular characteristics of PEG, to date, there are on the market 12 pegylated compounds: 9 are proteins, one peptide, one aptamer and a liposomal formulation, containing doxorubicin.
The improvements in the pharmacokinetic profile of these drugs, thanks to the use of drug delivery systems, can be also applied in the field of tissue engineering, where the same issues are of fundamental importance for the development of scaffolds for cells capable of releasing growth factors.
In the last years various polymers have been studied by many research groups to find an alternative to PEG, but its excellent biocompatibility and the know-how in its use has not brought any polymer to be truly competitive against PEG. Nevertheless, PEG presents some limits such as its non-biodegradability and in some case there are reports of antibodies against PEG. Therefore, there is an increased need for a PEG substitute.
In the first section of this work hyaluronic acid (HA) has been studied as a candidate polymer for bioconjugation of proteins (HAylation). HA, being biodegradable can compensate this limit of PEG. HA, is also present in humans and is metabolized by hyaluronidase. Moreover, HA has the advantage of a high loading compared to PEG, thanks to the presence of repetitive functional groups in each monomer.
This part of the work was focused on the study of HA conjugation (HAylation) to two model enzymes, trypsin and Ribonuclease A, and then to an interesting protein in pharmaceutical field, insulin.
In order to avoid cross-linking phenomena, only a fraction of all carboxyl groups of the polymer has been modified to aldehyde allowing the conjugation with the amino groups of the protein models. Furthermore, by modulating the pH of reaction two protein-HA conjugates were obtained, selective N-terminal (pH 6) or random (pH 8), this taking advantage of the different pKa values of the amino groups in the proteins.
The first products obtained with the enzymes Ribonuclease A and trypsin were tested verifying the residual activity compared to the native proteins. All conjugates, in particular those obtained by N-terminal selective conjugation, maintain a good activity on small substrates (30% decrease); only the HA-derived trypsin retains about 60% of residual activity against the substrate with a high weight molecular. Furthermore, enhanced stability over time was found for HA-trypsin respect to the free enzyme (45% on average) and also susceptibility to hyaluronidase was confirmed for both conjugates.
Polymer validation as potential protein carrier was then evaluated by preparing conjugates with bovine insulin, as an example of pharmacologically active protein. Two conjugates were synthesized by N-terminal selective conjugation starting from polymers with different degree of aldehyde derivatization, 4% and 21%, yielding products with a protein loading of 17% and 32% (w/w), respectively.
The therapeutic efficacy of the conjugates in comparison with insulin was tested in Sprague Dawley rats with induced diabetes. The conjugate with a lower protein loading was more effective and with a longer pharmacodynamic effect on the reduction on blood glucose level.
The second section of the work was focused on an innovative strategy of enzymatic PEGylation of oligonucleotides. Briefly, the method investigated on model oligonucleotides is composed of two steps: the first consists in the chemical conjugation of a short oligonucleotide to a PEG chain, the second step is the enzymatic-mediated conjuagation of the PEGylated oligonucleotide with a DNA sequence by the DNA T4 ligase.
To study the enzymatic PEGylation, 4 oligo sequences have been prepared as ligation model: two complementary pairs ending with sticky-ends in turn complementary (18-mer + 21-mer and 16-mer + 19-mer). The 18-mer has a thiol group in 5’-ending, in order to perform the coupling with PEG.
Applying some modifications to ligation classical protocols, excellent results were obtained: PEGylated portion completely ligate the other ds-DNA and no undesired products were found.
To further confirm the effective ligation, the ligated and PEGylated sequence was restricted with EcoRI. Indeed, the EcoRI recognized a sequence that is present only the ligated DNA. Complete restriction was found in absence and even in the presence of the polymer, further confirming the successes of ligation.
Furthermore it was investigated if a reduced number of bases coupled to PEG can still preserve the requirements for the ligase enzyme activity. Thus, the pair of the complementary sequences then coupled to PEG has been reduced to half (9-mer + 12-mer). Even with a shorter PEGylated sequence a complete ligation was obtained.
In conclusion in this thesis it has been demonstrated that HA can be a valid alternative to PEG for protein conjugation.
In the field of oligonucleotide delivery an enzymatic approach of oligonucleotide conjugation can open new horizons that so far have not been completely explored
Enzymatic Formation of PEGylated Oligonucleotides
No full textGene therapy, siRNA, and therapeutic aptamers attract great interest owing to their versatility to treat a wide range of diseases and their potential high selectivity. Unfortunately, oligonucleotide-based therapeutics suffer rapid degradation by nucleases, scarce cell internalization, and fast kidney clearance. To address these limitations, the covalent attachment by mild chemical reactions of an activated polyethylene glycol (PEG) is widely used to obtain PEGylated nucleic acids showing a more favorable pharmacokinetic profile. We describe here a method for the enzymatic formation of PEGylated nucleic acids employing T4 DNA ligase: the ligation protocol was set up and optimized allowing the complete achievement of PEGylated oligonucleotides amenable to further enzymatic reactions. The feasibility of this approach for bioconjugation was demonstrated employing a set of PEG-donors and oligonucleotide acceptors, differing in the chemical link between PEG and the oligonucleotide donor, and in the length, sequence, and structure of the oligonucleotides employed. The ligase reaction allowed us to obtain double-stranded as well as single-stranded oligonucleotides, thus demonstrating the applicability of the method to a variety of substrates suitable for diagnostic and therapeutic applications
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
- …
