1,720,988 research outputs found
QM/MM dynamics of a Peridinin model in triplet state in three prototypical solvents
Full text linkPeridinin (Per) is a carbonyl-containing carotenoid playing a key role in light harvesting and photoprotection in dinoflagellates. This carotenoid plays its photoprotective role by quenching the potentially dangerous 3Chl-a triplet state through the formation of the non-reactive 3Per triplet state through Dexter energy transfer mechanism. We have investigated by means of Quantum Mechanics/Molecular Mechanics dynamics simulations at room temperature the structural and dynamical properties of a Peridinin model system (PMS) in triplet state in three different solvents: cyclohexane, apolar/aprotic; acetonitrile, polar/aprotic; and methanol (MeOH), polar/protic. Our results of 3PMS in MeOH show that the lactonic carbonyl has a stronger tendency to accept hydrogen bonds compared to the corresponding singlet ground state (1PMS). This effect may play some so far overlooked role in Per-containing proteins (notably the water soluble Peridinin-Chlorophyll-Proteins – PCPs). The vibrational properties of the 3PMS dynamics in the three solvents have been analyzed by means of decomposition of the vibrational density of states in effective normal modes. The results show that the solute-solvent interactions can influence some vibrational bands of 3PMS; in particular, they are able to modulate the position of the lactonic C[dbnd]O stretching band. The situation is particularly evident in the case of MeOH, where the dynamics of the MeOH⋯O[dbnd]C hydrogen bond interactions can strongly influence the band position and shape. As vibrational spectroscopy (notably step-scan FTIR difference spectroscopy) has been largely used to investigate 3Per in PCPs, especially using the lactonic carbonyl stretching as a marker band to investigate the different photophysical role of each Per in the protein complex, this study represents an important step to understand the experimental spectra and to identify the Per(s) molecule(s) bearing the triplet in PCPs
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Effect of Dehydration on Light-Adapted States of Bacterial Reaction Centers Studied by Time-Resolved Rapid-Scan FTIR Difference Spectroscopy
No full textDehydration is known to affect the rate of electron transfer backreaction from the light-induced charge separation state P+QA− to the neutral ground state PQA in photosynthetic bacterial Reaction Centers. On the other hand, a 20 s continuous illumination period has been demonstrated to induce (at 297 K) formation of one or more light-adapted states at different levels of dehydration; these light-adapted states are believed to be related to peculiar response(s) from the protein. In this work, we applied time-resolved rapid-scan FTIR difference spectroscopy to investigate the protein response under dehydrated conditions (RH = 11%) at 281 K both after a flash and under prolonged continuous illumination. Time-resolved FTIR difference spectra recorded after a laser flash show a protein recovery almost synchronous to the electron transfer backreaction P+QA− → PQA. Time-resolved FTIR difference spectra recorded after 20.5 s of continuous illumination (RH = 11%, T = 281 K) surprisingly show almost the same kinetics of electron transfer back reaction compared to spectra recorded after a laser flash. This means that the mechanism of formation of a light-adapted stabilized state is less effective compared to the same hydration level at 297 K and to the RH = 76% hydration level (both at 281 K and 297 K). Time-resolved FTIR difference spectra after continuous illumination also suggest that the 1666 cm−1 protein backbone band decays faster than marker bands for the electron transfer back reaction P+QA− → PQA. Finally, FTIR double-difference spectra (FTIR difference spectrum recorded after 18.4 s illumination minus flash-induced FTIR difference spectrum) suggest that at RH = 11%, a light-adapted state different from the one observed at RH = 76% is formed. A possible interpretation is that at RH = 11%, the protein response is modified by the fact that only protons can move easily, differently from water molecules, as instead observed for RH = 76%. This probably makes the formation of a real light-adapted P+QA− stabilized state at RH = 11% unfeasible
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
koamabayili/VECTRON-author-checklist: VECTRON author checklist
No full textWe have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
Hydrogen bonding properties of DMSO in ground-state formation and optical spectra of 3-hydroxyflavone anion
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