1,720,973 research outputs found
jHOLES
No full textjHoles implements the clique weight rank persistent homology algorithm. jHoles fills the lack of an efficient implementation of the filtering process for clique weight rank homology. For a complete description of the approach at the basis of the software tool refer to: Jacopo Binchi, Emanuela Merelli, Matteo Rucco, Giovanni Petri, and Francesco Vaccarino. jHoles: A tool for understanding biological complex networks via clique weight rank persistent homology. Electronic Notes in Theoretical Computer Science , 306:5–18, 201
Using Topological Data Analysis for diagnosis pulmonary embolism
No full textPulmonary Embolism (PE) is a common and potentially lethal condition. Most
patients die within the first few hours from the event. Despite diagnostic
advances, delays and underdiagnosis in PE are common.To increase the diagnostic
performance in PE, current diagnostic work-up of patients with suspected acute
pulmonary embolism usually starts with the assessment of clinical pretest
probability using plasma d-Dimer measurement and clinical prediction rules. The
most validated and widely used clinical decision rules are the Wells and Geneva
Revised scores. We aimed to develop a new clinical prediction rule (CPR) for PE
based on topological data analysis and artificial neural network. Filter or
wrapper methods for features reduction cannot be applied to our dataset: the
application of these algorithms can only be performed on datasets without
missing data. Instead, we applied Topological data analysis (TDA) to overcome
the hurdle of processing datasets with null values missing data. A topological
network was developed using the Iris software (Ayasdi, Inc., Palo Alto). The PE
patient topology identified two ares in the pathological group and hence two
distinct clusters of PE patient populations. Additionally, the topological
netowrk detected several sub-groups among healthy patients that likely are
affected with non-PE diseases. TDA was further utilized to identify key
features which are best associated as diagnostic factors for PE and used this
information to define the input space for a back-propagation artificial neural
network (BP-ANN). It is shown that the area under curve (AUC) of BP-ANN is
greater than the AUCs of the scores (Wells and revised Geneva) used among
physicians. The results demonstrate topological data analysis and the BP-ANN,
when used in combination, can produce better predictive models than Wells or
revised Geneva scores system for the analyzed cohor
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
jHoles: A Tool for Understanding Biological Complex Networks via Clique Weight Rank Persistent Homology
Full text linkComplex networks equipped with topological data analysis are one of the promising tools in the study of biological systems (e.g. evolution dynamics, brain correlation, breast cancer diagnosis, etc...). In this paper, we propose jHoles, a new version of Holes, an algorithms based on persistent homology for studying the connectivity features of complex networks. jHoles fills the lack of an efficient implementation of the filtering process for clique weight rank homology. We will give a brief overview of Holes, a more detailed description of jHoles algorithm, its implementation and the problem of clique weight rank homology. We present a biological case study showing how the connectivity of epidermal cells changes in response to a tumor presence. The biological network has been derived from the proliferative, differentiated and stratum corneum compartments, and jHoles used for studying variation of the connectivity
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
koamabayili/VECTRON-author-checklist: VECTRON author checklist
No full textWe have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
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