1,721,014 research outputs found
Validation of the name Abacopteris nitida (Thelypteridaceae)
No full textKovalchuk, Andriy (2023): Validation of the name Abacopteris nitida (Thelypteridaceae). Phytotaxa 619 (2): 203-204, DOI: 10.11646/phytotaxa.619.2.9, URL: http://dx.doi.org/10.11646/phytotaxa.619.2.
Diversity and evolution of ABC proteins in mycorrhiza-forming fungi
No full textBackground: Transporter proteins are predicted to have an important role in the mycorrhizal symbiosis, due to the fact that this type of an interaction between plants and fungi requires a continuous nutrient and signalling exchange. ABC transporters are one of the large groups of transporter proteins found both in plants and in fungi. The crucial role of plant ABC transporters in the formation of the mycorrhizal symbiosis has been demonstrated recently. Some of the fungal ABC transporter-encoding genes are also induced during the mycorrhiza formation. However, no experimental evidences of the direct involvement of fungal ABC transporters in this process are available so far. To facilitate the identification of fungal ABC proteins with a potential role in the establishment of the mycorrhizal symbiosis, we have performed an inventory of the ABC protein-encoding genes in the genomes of 25 species of mycorrhiza-forming fungi. Results: We have identified, manually annotated and curated more than 1300 gene models of putative ABC protein-encoding genes. Out of those, more than 1000 models are predicted to encode functional proteins, whereas about 300 models represent gene fragments or putative pseudogenes. We have also performed the phylogenetic analysis of the identified sequences. The sets of ABC proteins in the mycorrhiza-forming species were compared to the related saprotrophic or plant-pathogenic fungal species. Our results demonstrate the high diversity of ABC genes in the genomes of mycorrhiza-forming fungi. Via comparison of transcriptomics data from different species, we have identified candidate groups of ABC transporters that might have a role in the process of the mycorrhiza formation. Conclusions: Results of our inventory will facilitate the identification of fungal transporters with a role in the mycorrhiza formation. We also provide the first data on ABC protein-coding genes for the phylum Glomeromycota and for orders Pezizales, Atheliales, Cantharellales and Sebacinales, contributing to the better knowledge of the diversity of this protein family within the fungal kingdom
Bacterial biota of forest trees
No full textThe microbiome of forest trees is a major determinant of health and productivity, with roles in nutrient acquisition, stress tolerance, immune regulation, and disease suppression. Tree-associated microbiota therefore confer significant genetic and phenotypic diversity on their hosts, acting as an extended phenotype and facilitating host adaptation to environmental and pathogen threats. Here we synthesize current knowledge on the composition and function of the bacterial biota in the above- and below-ground compartments of forest tree species of boreal, temperate, and Mediterranean biomes. We make recommendations for future research priorities toward characterizing the bacterial biota of forest tree species and biomes, using integrated analytical approaches that include other biotic and abiotic components of the microbiome. Such integrated research approaches are critical to address the complex ecological factors that drive tree holobiont function at both individual and landscape scales, to safeguard global forest biomes and the ecological services they support
Forest Microbiology:Volume 2: Forest Tree Health
No full textForest Tree Health highlights a range of emerging microbial phytopathogens of forest trees, along with novel approaches for managing tree pests and diseases in a changing climate. The book provides an overview of selected microbial pathogens of forest trees, with an emphasis on their biology, lifecycle, spreading mechanisms, impact on affected tree species and current and prospective control strategies. At the same time, the impact of tree microbiomes on host fitness is discussed. Beneficial components of tree microbiota are presented, along with their functional role in tree nutrition, immunity and disease resistance. In addition, this volume addresses the many functions of microbial disease agents of trees including fungi, bacteria, viruses and phytoplasma. Strong emphasis is placed on the genetics, biochemistry, physiology, evolutionary biology and population dynamics of the microorganisms involved. This title is a key resource for foresters and forest pathology practitioners, as well as plant biologists
Forest Microbiology:Volume 2: Forest Tree Health
No full textForest Tree Health highlights a range of emerging microbial phytopathogens of forest trees, along with novel approaches for managing tree pests and diseases in a changing climate. The book provides an overview of selected microbial pathogens of forest trees, with an emphasis on their biology, lifecycle, spreading mechanisms, impact on affected tree species and current and prospective control strategies. At the same time, the impact of tree microbiomes on host fitness is discussed. Beneficial components of tree microbiota are presented, along with their functional role in tree nutrition, immunity and disease resistance. In addition, this volume addresses the many functions of microbial disease agents of trees including fungi, bacteria, viruses and phytoplasma. Strong emphasis is placed on the genetics, biochemistry, physiology, evolutionary biology and population dynamics of the microorganisms involved. This title is a key resource for foresters and forest pathology practitioners, as well as plant biologists
Going Beyond Counting First Authors in Author Co-citation Analysis
Get PDFThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Get PDF“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Get PDFWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
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