1,721,277 research outputs found
"Non-metabolizable" glucose analogue shines new light on priming mechanisms: Triggering of microbial metabolism
No full textPriming of soil organic matter decomposition has attracted much research interest, yet a conclusive mechanistic explanation of the phenomenon remains elusive. One proposal is that low molecular weight organic substances might "trigger" an acceleration of microbial metabolism. For the first time, we applied a glucose analogue to soil to demonstrate triggering of microbial metabolism, and to estimate its relative contribution to priming. "Non-metabolizable" glucose analogues have been widely used in pure culture studies to mimic glucose, but never in soil biochemistry. We hypothesized that analogue molecules will elicit a metabolic response in microorganisms despite limited catabolism, and thereby confirm the proposed triggering. The effect of C-14-labeled 3-O-methyl-D-glucose (OMG) - a common "non-metabolizable" glucose analogue on soil organic matter mineralization was compared to that of C-14-labeled D-glucose. OMG was mineralized, but its mineralization was initially impeded and substantially delayed, relative to glucose. OMG caused brief but strong priming in the first 24 h, increasing unlabeled CO2 efflux by 173%, 89% and 36% above control for additions of 0.49, 2.4 and 4.9 mu mol OMG g(-1) soil, respectively. In contrast, glucose caused low or negative priming on the first day. On the first day after OMG addition, a negative correlation between priming and OMG mineralization indicated that triggering is a valid mechanism of microbial activation during a famine-feast transition, but is short-lived. Glucose mineralization peaked on the second day for medium and high additions, coinciding with peaks in positive priming. Maximum substrate mineralization also coincided with peaks in priming for medium and high OMG levels, but these occurred 9 and 11 days after addition, respectively. This revealed non-triggering priming mechanisms, which contributed most to priming and were closely coupled to substrate mineralization. By separating energy- and substrate-dependent metabolic processes from triggering processes, the glucose analogue 3-O-methyl-D-glucose enabled triggering to be demonstrated, but triggering by glucose occurs without contributing greatly to priming. (C) 2016 Elsevier Ltd. All rights reserved
Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions
No full textCompound‐specific 13 C stable isotope probing confirms synthesis of polyhydroxybutyrate by soil bacteria
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Mineralization of “non-metabolizable” glucose analogues in soil: potential chemosensory mimics of glucose
Full text link© 2017 WILEY-VCH Verlag GmbH & Co. KGaA, WeinheimGlucose is widely used to study the dynamics of easily available organics in soil. Pure culture studies have revealed that many microorganisms can sense and respond to glucose through chemosensory mechanisms that are not directly reliant on energy catabolism. However, the rapid mineralization of glucose by microorganisms makes it difficult to disentangle its energy effects from such non-catabolic interactions. “Non-metabolizable” glucose analogues have proven useful in mechanistic studies of glucose in pure culture, but have never been applied to complex microbial communities in soil. We sought to determine how their mineralization in soil differs from that of glucose, and whether they have potential as a new approach for investigating chemosensory mechanisms in soil microbiology. We incubated soil from an agricultural Haplic Luvisol under controlled conditions for 24 d and monitored CO2 efflux after addition of (1) glucose, and three “non-metabolizable” glucose analogues: (2) 2-deoxyglucose (DG), (3) α-methylglucoside (αMG), and (4) 3-O-methyl-glucose (OMG), at three concentration levels, along with a control. All three analogues did in fact produce a large increase in soil CO2 efflux, but the dynamics of their mineralization differed from the rapid degradation seen for glucose. At medium and high concentrations, CO2 efflux peaked between 2.5 and 4 d after amendment with DG and αMG, and was delayed by about one week for OMG. The markedly different patterns of mineralization between glucose and OMG offer a new tool for investigating the behavior of glucose in soil. By using OMG as a glucose model, chemosensory mechanisms could be studied with limited interference from energy catabolism
Contrasting effects of organic and mineral nitrogen challenge the N-Mining Hypothesis for soil organic matter priming
No full textGoing Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
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