1,720,953 research outputs found
Ionic Force Field Parameterization with Bayesian Optimization
No full textForce field is widely used to model the potential energy in atomistic simulation systems. Despite force fields have a concise mathematical form, a good set of force field parameters usually requires extra care of calibration. Besides, numerous ionic force field parameters are reported from various sources as researchers have specific target properties for their interests. Previous studies mainly used brute force optimization to find the most desired set of parameters in ionic solution. However, these methods are not efficient since the evaluation of the performance of a parameter set is time-consuming. This work used a stochastic optimization routine in machine learning to tackle the problem of black-box function optimization. This method shows excellent performance of locating the optimum regions of the black-box cost function in only a few iterations. To evaluate the performance of a set of ionic force field parameters, MD simulations are carried out in LAMMPS to compute ionic properties. The solvation free energy and ion oxygen distance are selected as the primary targets while the self-diffusion coefficient and contact ion pairs are regarded as the secondary targets. The optimum region of primary targets are found by direct optimization, then secondary targets are studied with optimized parameters of the primary targets. There have been found discrepancies between the optimum regions of different targeted properties. The dependence studies of individual ionic force field parameters () are analyzed and parameterization trends are found out. Base on these trends, the final calibration model is proposed.Complex Fluid ProcessingMechanical Engineering | Energy and Process Technolog
Multi-species electrochemical reaction modeling using lattice Boltzmann method: study of transport phenomena in alkaline water electrolyzer
No full textEnhancing the efficiency of industrial water electrolysis for hydrogen production is vital for the energy transition. In Alkaline Water Electrolysis (AWE), hydrogen is produced at the cathode, and the bubbles are formed when the local hydrogen concentration exceeds the solubility limit. It is important to understand the exact local conditions that result in the nucleation of bubbles in this multi-phase and reactive system. With modeling, it is possible to gain insight into the relation between various local properties, but the model needs to include all relevant physics and chemistry. Thus, this work focuses on the multi-species electrochemical transport phenomena with reaction occurring on the electrode-electrolyte interface.The electrochemical transport phenomena and the bubble nucleation are meso-scale phenomena occurring at the electrode-electrolyte interface. Lattice Boltzmann Method (LBM) is well suited for modeling meso- scale behavior but it is computationally memory expensive. Consequently, a hybrid approach combining Finite Difference Method (FDM) and LBM has been developed to simulate transport phenomena in the migration-diffusion problem with heterogeneous reaction kinetics. The Debye-Hückel theory is used as a benchmark to validate the developed model. Subsequently, the model is employed to simulate the transport phenomena occurring in the hydrogen half-cell of AWE, with a specific focus on the Hydrogen Evolution Reaction (HER) governed by the Butler-Volmer kinetics equation.The model captures the dynamic evolution of physical parameters such as electric potential, concentration of species, and fluxes within the system particularly in the Electric-Double layer (EDL). The effect of electrode potential on the distribution of species involved in the reaction are studied by performing simulations for different electrode potential. The influence of secondary fluxes on the species distributionis studied by implementing a spatially varying boundary condition to the reacting site. Finally, the formulated methodology is extended to solve a multi-phase system with species transportation occurringaround a catalyst particle.Mechanical Engineering | Energy, Flow and Process Technolog
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
The importance of specifically adsorbed ions for electrokinetic phenomena: Bridging the gap between experiments and MD simulations
No full textMolecular Dynamics (MD) simulations are uniquely suitable for providing molecular-level insights into the Electric Double Layer (EDL) that forms when a charged surface is in contact with an aqueous solution. However, simulations are only as accurate in predicting EDL properties as permitted by the atomic interaction models. Experimental ζ-potential values and surface charges could provide a potentially suitable reference to validate and tune the interaction models, if not for the fact that they themselves are a product of imperfect models used to interpret the raw measurement data. Here, we present an approach to tune an interaction model by comparing Electro-Osmotic Flow (EOF) MD simulations against experimental Streaming Current (SC) measurements while minimizing potential modeling errors arising from both approaches. The point that is least susceptible to interpretation and modeling errors is argued to be at the concentration for which zero flow velocity is observed in EOF simulations and a net zero electric current is measured in SC experiments. At this concentration, the ζ-potential is also zero. We were able to match the experimental concentration at which ζ = 0 in MD simulations for a CaCl2 solution at pH 7.5 in contact with fused silica by tuning the ion-surface Lennard-Jones cross interactions. These interactions were found to greatly affect the ion distribution within the EDL and particularly the formation of inner-sphere surface-complexes, which, in turn, affects the electrokinetic flow. With the ion distribution determined explicitly, a series of properties can be calculated unambiguously, such as the capacitance needed for surface complexation models.Green Open Access added to TU Delft Institutional Repository 'You share, we take care!' - Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Complex Fluid Processin
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Dynamic Surface Charge Distribution: Examining its effect on the electric double layer using Molecular Dynamics simulation
No full textIn the pursuit of gaining a better understanding of the mechanisms of oxide-electrolyte interfaces, this thesis presents a working model that mimics a dynamic surface charge distribution by introducing protonation and deprotonation events using MD simulation. Due to the limitations of measurement equipment that operate on an atomic scale, literature cannot provide us with exact time scales for protonation and deprotonation events. Consequently, previous research simulated the surface charge distribution of oxide surfaces as being static and assumed the effect of local protonation and deprotonation to be negligible. This work shows that varying the (de)protonation event period τ significantly influences the characteristics of the electric double layer (EDL). Continuous protonation and deprotonation changes the diffusion coefficient and subsequently alters the structure of the Stern layer, screening function, and preferential adsorption type. As a whole, dynamic surface charge distribution has a considerable impact on the characteristics of the electric double layer depending on τ and should be considered in future MD simulations
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
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