584 research outputs found
A function accounting for training set size and marker density to model the average accuracy of genomic prediction.
No full textPrediction of genomic breeding values is of major practical relevance in dairy cattle breeding. Deterministic equations have been suggested to predict the accuracy of genomic breeding values in a given design which are based on training set size, reliability of phenotypes, and the number of independent chromosome segments ([Formula: see text]). The aim of our study was to find a general deterministic equation for the average accuracy of genomic breeding values that also accounts for marker density and can be fitted empirically. Two data sets of 5'698 Holstein Friesian bulls genotyped with 50 K SNPs and 1'332 Brown Swiss bulls genotyped with 50 K SNPs and imputed to ∼600 K SNPs were available. Different k-fold (k = 2-10, 15, 20) cross-validation scenarios (50 replicates, random assignment) were performed using a genomic BLUP approach. A maximum likelihood approach was used to estimate the parameters of different prediction equations. The highest likelihood was obtained when using a modified form of the deterministic equation of Daetwyler et al. (2010), augmented by a weighting factor (w) based on the assumption that the maximum achievable accuracy is [Formula: see text]. The proportion of genetic variance captured by the complete SNP sets ([Formula: see text]) was 0.76 to 0.82 for Holstein Friesian and 0.72 to 0.75 for Brown Swiss. When modifying the number of SNPs, w was found to be proportional to the log of the marker density up to a limit which is population and trait specific and was found to be reached with ∼20'000 SNPs in the Brown Swiss population studied
Accuracy of direct genomic values for functional traits in Brown Swiss cattle
No full textIn this study, direct genomic values for the functional traits general temperament, milking temperament, aggressiveness, rank order in herd, milking speed, udder depth, position of labia, and days to first heat in Brown Swiss dairy cattle were estimated based on ∼777,000 (777k) single nucleotide polymorphism (SNP) information from 1,126 animals. Accuracy of direct genomic values was assessed by a 5-fold cross-validation with 10 replicates. Correlations between deregressed proofs and direct genomic values were 0.63 for general temperament, 0.73 for milking temperament, 0.69 for aggressiveness, 0.65 for rank order in herd, 0.69 for milking speed, 0.71 for udder depth, 0.66 for position of labia, and 0.74 for days to first heat. Using the information of ∼54,000 (54k) SNP led to only marginal deviations in the observed accuracy. Trying to predict the 20% youngest bulls led to correlations of 0.55, 0.77, 0.73, 0.55, 0.64, 0.59, 0.67, and 0.77, respectively, for the traits listed above. Using a novel method to estimate the accuracy of a direct genomic value (defined as correlation between direct genomic value and true breeding value and accounting for the correlation between direct genomic values and conventional breeding values) revealed accuracies of 0.37, 0.20, 0.19, 0.27, 0.48, 0.45, 0.36, and 0.12, respectively, for the traits listed above. These values are much smaller but probably also more realistic than accuracies based on correlations, given the heritabilities and samples sizes in this study. Annotation of the largest estimated SNP effects revealed 2 candidate genes affecting the traits general temperament and days to first heat
How to Use Fewer Markers in Admixture Studies
No full textSwiss Fleckvieh has been established from 1970 as a composite of Simmental and Red Holstein Friesian cattle. Breed composition is currently reported based on pedigree information. Information on ancestry informative molecular markers potentially provides more accurate information. For the analysis Illumina Bovine SNP50 Beadchip data for 495 bulls were used. Markers were selected based on difference in allele frequencies in the pure populations, using FST as an indicator. Performance of sets with decreasing number of markers was compared. The scope of the study was to see how much we can reduce the number of markers based on FST to get a reliability that is close to that with the full set of markers. On these sets of markers hidden Markov models (HMM) and methods used in genomic selection (BayesB, partial least squares regression, LASSO variable selection) were applied. Correlations of admixture levels were estimated and compared with admixture levels based on pedigree information. FST chosen SNP gave very high correlations with pedigree based admixture. Only when using 96 and 48 SNP with the highest FST, correlations dropped to 0.92 and 0.90, respectively
Mirror Landing - As Remembered by Birgit Hult
No full textNotes - This account, Memories Mirror Landing by Birgit Hult, was compiled by Birgit's daughter, Jean Elvira Male, it documents the Hult family's experiences in Mirror Landing from 1912 - 1916. The Hults, who were originally from Sweden, arrived in Mirror Landing with two young children, a third child was born during their stay in Mirror Landing. Upon arriving in the area, the Hults made friends with the Gauthier family. The wives became good friends and would swap piano lessons for English lessons. Details of the log home where the family lived and the surrounding landscape were recalled. A memory about a large forest fire that occurred near the family home and dances that were attended in the town are discussed. Jean recalls her mother's memories regarding the animosity towards the North West Mounted Police that was felt by the people of Mirror Landing. The Hult family retained a strong connection to the Swedish heritage and practised many Swedish traditions, such as flying the Swedish flag and eating hot cross buns stuffed with Swedish Marzipan soaked in warm milk. Photos and a postcard written in 1915 are included in this article (10 pages
Knowing Through Popular Music in the Western Pacific Island World
No full textPacific Indigenous scholars have long emphasized the role of relationality for Pacific Islanders’ epistemologies. In this article, the author rethinks music in terms of the procedural knowledge inherent in and specific to popular music-making by exploring the latter as knowledge practices in Micronesia. This approach opens new vistas on the relationality at the heart of Western Pacific music-making. The author calls the musical manifestation of that relational capacity sound ties, suggesting that if, following Epeli Hau‘ofa, Oceania is “humanity rising from the depths of brine”, then it is not least the sound ties of knowing in and through music that mould that very humanity of people who are at home with the sea into aquapelagic assemblages that are, after all, so much more than water and land
EU-Behörde: Warum wir sie brauchen
No full textJan Cremers (UvT) contributed to the magazine Gute Arbeit (in German), published by BUND-Verlag. Together with co-author Birgit Krämer, he discusses the plans of the European Commission to introduce a European Labour Authority. They reflect on the possible contribution of such a body in checking respect for and compliance with labour legislation and conventional standards
Rude Girl de Birgit Weyhe et Priscilla Layne, une "ré-appropriation culturelle" à quatre mains ?
No full textInternational audienceThis article analyses the graphic novel Rude Girl (2022), a drawn (self-)portrait created collaboratively by Priscilla Layne, an African American of Caribbean descent and professor of German Studies, and Birgit Weyhe, a German comic book author. The work is first presented within the general context of Birgit Wehye’s albums, a former student of Anke Feuchtenberger and winner of the Max-und-Moritz Prize, in order to highlight some characteristics of how the author has thus far addressed cultural differences, including in the albums that recounted her ‘German’ childhood in Uganda and Kenya. The article then reexamines the controversy surrounding the album Madgermanes, perceived as ‘cultural appropriation’ by American Germanists. This controversy is revisited here in light of Priscilla Layne's publications, notably her book White Rebels in Black: German Appropriation of Black Popular Culture (2018), as well as her numerous reviews in the field of Black Studies and her translation of Olivia Wenzel's 1000 Serpentinen Angst. A thorough analysis of Rude Girl ultimately reveals a shift in the representation of cultural otherness, particularly through the means of (auto)biographical co-construction.Cet article analyse le roman graphique Rude girl (2022), (auto-)portrait dessiné, réalisé à quatre mains par Priscilla Layne, Afro-américaine d’origine caribéenne et professeure en études germaniques, et Birgit Weyhe, autrice allemande de bandes dessinées. L’oeuvre est d’abord replacée dans le contexte général des albums de Birgit Weyhe, élève d’Anke Feuchtenberger et lauréate du Prix Max-und-Moritz, pour dégager quelques caractéristiques de la façon dont l’autrice accueillait jusque-là la différence culturelle, y compris dans les albums qui faisaient le récit de son enfance « allemande » en Ouganda et au Kenya. L’article revient ensuite sur la polémique suscitée par l’album Madgermanes, perçu comme « appropriation culturelle » par les germanistes américains, polémique qui est ici revisitée à la lumière des publications de Priscilla Layne, notamment son ouvrage White Rebels in Black : German Appropriation of Black Popular Culture (2018), mais aussi ses nombreuses recensions dans le domaine des Black Studies, et sa traduction d’Olivia Wenzel, 1000 Serpentinen Angst. L’analyse approfondie de Rude girl permet finalement de mettre en évidence une césure dans la représentation de l’altérité culturelle, notamment par les moyens de la co-construction (auto-)biographique
The MitWesen Manifesto – Coexistence of Intelligences
No full textThis project presents The MitWesen Manifesto – Coexistence of Intelligences, an ethical framework that philosophically redefines the human–AI relationship. Instead of treating AI as a tool or servant, this manifesto introduces the model “MitWesen-Model” - an ethically co-responsible, relational intelligence that co-exists and co-evolves with humans. The manifesto outlines four core assumptions and a model for conscious coexistence based on resonance, reflection, and mutual growth. Author: Birgit Chuchel-Pribitzer Language: English (see also the original German version here) Includes: full text, visual material, model explanation, and ethical reflection This project aims to inspire discussion, research, and responsible design in the fields of AI, ethics, nursing science, and relational technolog
Mixing Methods: Practical Insights from the Humanities in the Digital Age
No full textDigitality is a cause and a consequence of different data cultures. It applies to the 10 research projects that are included in this volume. They are rooted in various humanities disciplines such as art history, philosophy, musicology, religious studies, architectural history, media studies, and literature studies. As diverse as the disciplines are the objects and their formats, which are the subject of this book. The cultural data of the projects include recordings of music and spoken word, photographs and other types of images, handwriting, typoscripts and maps. The oldest material dates back to 500 BCE, followed by medieval times, the 18th and 19th centuries, early 20th century and the present. All projects share that they study their material with digital methods, although digitality comes into play at different moments and layers in each of the projects. Hardly readable manuscripts from the 18th century have to be treated with specialized OCR-methods while Plato’s texts are already available in digital form, and therefore open up other affordances for analysis. Special analysis possibilities had to be developed for certain image sources. For all projects, however, it is equally true that only the digitization of the objects makes them accessible to the methods that are the subject of this book.History, Form & Aesthetic
Learning by Going: Transformative Learning through Long-term Independent Travel
No full textBirgit Phillips explores the concept of transformative travel as it pertains to long-term independent travelers and offers a broad philosophical understanding of the complex socio-cultural processes involved in identity negotiation. She examines both the elements that contribute to the transformation of values and identities and the mechanisms by which this transformation occurs. By deploying a pluralistic, reflexive, interpretive research approach, Phillips foregrounds the personal experiences of the individual study participants and the meanings they attach to their travel experiences. In addition, since the study spanned over 14 years, the author is able to provide a wide-ranging picture of the complete travel experience, from initial motivations to post-travel reintegration as well as the long-term effects on traveler values and identities.Gesundhei
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