1,720,984 research outputs found
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Production and characterization of the monoxygenase domain of human MICAL, a multidomain signaling flavoprotein
No full textTOWARDS THE BIOCHEMICAL CHARACTERIZATION OF SELADIN-1/DHCR24 : HETEROLOGOUS PRODUCTION OF THE HUMAN PROTEIN
No full textStructure-function studies of the major insertion of the apicomplexan ferredoxin NADP+ reductase, investigated by mutagenesis and limited proteolysis
No full textApicomplexan parasites are a large phylum of unicellular and obligate intracellular organisms of great medical and economic importance. They include the human pathogens Plasmodium spp., the causative agents of malaria, and Toxoplasma gondii, an opportunistic human parasite. It was shown that most members of this phylum harbor a plastid-like organelle, called the apicoplast, of vegetal origin. The plant-type ferredoxin/ferredoxin-NADP+ reductase (Fd/FNR) redox system found in this organelle has been proposed as a target for novel drugs (1, 2). Elucidation of the properties and functions of this redox system would be greatly facilitated by a more detailed structural knowledge of the two components. Like many proteins from these protists, apicomplexan FNRs are characterized by the presence of unique peptide insertions of variable length and yet unknown function. The major insertion of T. gondii FNR (TgFNR) (28 aa with respect to maize root FNR) is near the FAD isoalloxazine ring binding motif. Thus, it is expected that it could influence the protein-protein interaction of the redox couple.
The aim of this study was therefore to investigate the structure and the involvement of this region of TgFNR in substrate binding by mutagenesis and limited proteolysis approaches.
All four proteinases tested yielded a limited number of peptides. Most of the cleavage sites were located within the major insertion of TgFNR, indicating that this region is surface exposed and is highly flexible. Furthermore, protection of the insertion by TgFd against proteolytic cleavage indicates a role for this region in ferredoxin binding (3).
Three different deleted forms of the parasite enzyme were produced, in which the insertion was fully removed (Del1), partially removed (Del2) or replaced with the homologous region of plant FNR (Del3). Compared to the wild type enzyme, Del2 and Del3 showed similar values for the kinetic parameters of the TgFd-dependent NADPH-cytochrome c reductase activity, while Km for ferredoxin of Del1 was highly increased. By affinity chromatography on immobilized TgFd, deleted TgFNRs were shown to bind more weakly TgFd than the wild-type enzyme. Del1 showed a remarkable loss of affinity for ferredoxin, probably because it lacks three positively charged residues which are present in Del2 and in Del3 mutants.
The results reported here allow us to conclude that the insertion of TgFNR is solvent exposed and structurally flexible. It is suggested to give rise to a 38-residue intrinsically unstructured subdomain, protruding from the top of the FAD-binding beta-barrel. Such a species-specific subdomain does not have major functions in protein folding and stability. Rather, it participates in TgFd binding, significantly increasing the stability of the protein-protein complex and improving the catalytic efficiency of the enzyme in the electron transfer to TgFd.
1. M. Vollmer et al. (2001) J. Biol. Chem. 276(8): 5483-5490
2. V. Pandini et al. (2002) J Biol Chem. 277(50):48463-48471.
3. V. Pandini et al. (2006) Biochemistry 45: 3563-357
Analysis of the major species-specific insertion of Toxoplasma gondii ferredoxin-NADP(+) reductase by protein engineering
No full textON THE MECHANISM OF L-LACTATE OXIDATION CATALYZED BY FLAVOCYTOCHROME B2: A COMBINED FIRST PRINCIPLE MOLECULAR DYNAMICS AND SITE DIRECTED MUTAGENESIS STUDY
No full textStudies on the heterologous production of human Seladin-1/DHCR24, a novel antiapoptotic factor
No full textVariations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
- …
