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The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference
Du, Chao, Liu, Li, Liu, Yunpeng, Fu, Zhaohui (2020): The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference. Zootaxa 4810 (2): 351-360, DOI: https://doi.org/10.11646/zootaxa.4810.2.
FIG. 3 in The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference
FIG. 3. Phylogenetic trees of 17 piciform species based on the nucleotide dataset inferred from Bayesian inference (a) and maximum likelihood (b). The numbers abutting branches refer to Bayesian posterior probabilities (BPP) and bootstrap support (BS). Halcyon pileata (Coraciiformes) was used to root the trees as an outgroup.Published as part of <i>Du, Chao, Liu, Li, Liu, Yunpeng & Fu, Zhaohui, 2020, The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference, pp. 351-360 in Zootaxa 4810 (2)</i> on page 356, DOI: 10.11646/zootaxa.4810.2.8, <a href="http://zenodo.org/record/4280803">http://zenodo.org/record/4280803</a>
FIG. 1 in The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference
FIG. 1. Circular map of the J. torquilla mitogenome. The inner circle shows the GC content, which is calculated based on a window-sliding method. The outer circle shows the gene features, orange for rRNA, red for tRNA, and blue for CDS. Genes inside the circle (on the J strand) are transcribed clockwise, while the outsides (on the N strand) are transcribed counterclockwise.Published as part of Du, Chao, Liu, Li, Liu, Yunpeng & Fu, Zhaohui, 2020, The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference, pp. 351-360 in Zootaxa 4810 (2) on page 354, DOI: 10.11646/zootaxa.4810.2.8, http://zenodo.org/record/428080
FIG. 4 in The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference
FIG. 4. Phylogenetic trees of 17 piciform species based on the amino acid dataset. The numbers abutting branches refer to Bayesian posterior probabilities (left) and ML bootstraps (right), ‾ not recovered. Branch lengths and topology are from the BI analysis. Halcyon pileata (Coraciiformes) was used to root the trees as an outgroup.Published as part of Du, Chao, Liu, Li, Liu, Yunpeng & Fu, Zhaohui, 2020, The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference, pp. 351-360 in Zootaxa 4810 (2) on page 358, DOI: 10.11646/zootaxa.4810.2.8, http://zenodo.org/record/428080
FIG. 2 in The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference
FIG. 2. Genetic distance within subfamily, between subfamily and family. Each boxplot represents the P distance based on the nucleotide and the amino acid datasets from 13 mitochondrial PCGs. Lower horizontal bar represents smallest observation, lower edge of rectangle represents 25 percentile, central bar within rectangle represents median, upper edge of rectangle represents 75 percentile, upper horizontal bar represents largest observation.Published as part of <i>Du, Chao, Liu, Li, Liu, Yunpeng & Fu, Zhaohui, 2020, The complete mitochondrial genome of the Eurasian wryneck Jynx torquilla (Aves Piciformes: Picidae) and its phylogenetic inference, pp. 351-360 in Zootaxa 4810 (2)</i> on page 356, DOI: 10.11646/zootaxa.4810.2.8, <a href="http://zenodo.org/record/4280803">http://zenodo.org/record/4280803</a>
Going Beyond Counting First Authors in Author Co-citation Analysis
The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Appropriate Similarity Measures for Author Cocitation Analysis
We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
We conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
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