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    Biogeochemical controls and isotopic signatures of nitrous oxide production by a marine ammonia-oxidizing bacterium

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    Nitrous oxide (N2O)[N subscript 2 O] is a trace gas that contributes to the greenhouse effect and stratospheric ozone depletion. The N2O [N subscript 2 O] yield from nitrification (moles N2O-N [N subscript 2 O - N] produced per mole ammonium-N consumed) has been used to estimate marine N2O [N subscript 2 O] production rates from measured nitrification rates and global estimates of oceanic export production. However, the N2O [N subscript 2 O] yield from nitrification is not constant. Previous culture-based measurements indicate that N2O [N subscript 2 O] yield increases as oxygen (O2) [O subscript 2] concentration decreases and as nitrite (NO2−) [NO subscript 2 overscore] concentration increases. Here, we have measured yields of N2O [N subscript 2 O] from cultures of the marine β-proteobacterium [beta-proteobacterium] Nitrosomonas marina C-113a as they grew on low-ammonium (50 μM)[50 mu M] media. These yields, which were typically between 4 × 10−4 [10 superscript -4] and 7 × 10−4 [10 superscript -4] for cultures with cell densities between 2 × 102 [10 super script 2] and 2.1 × 104 [10 superscript 4] cells ml−1 [ml superscript -1], were lower than previous reports for ammonia-oxidizing bacteria. The observed impact of O2 [O subscript 2] concentration on yield was also smaller than previously reported under all conditions except at high starting cell densities (1.5 × 106 cells ml−1) [1.5 x 10 superscript 6 cells ml superscript -1], where 160-fold higher yields were observed at 0.5% O2 [O subscript 2](5.1 μM [mu M] dissolved O2 [O subscript 2]) compared with 20% O2 [O subscript 2] (203 μM [mu M] dissolved O2 O subscript 2]). At lower cell densities (2 × 102 [10 superscript 2] and 2.1 × 104 [10 superscript 4] cells ml−1 [ml superscript -1]), cultures grown under 0.5% O2 [O subscript 2] had yields that were only 1.25- to 1.73-fold higher than cultures grown under 20% O2 [O subscript 2]. Thus, previously reported many-fold increases in N2O [N subscript 2 O] yield with dropping O2 [O subscript 2] could be reproduced only at cell densities that far exceeded those of ammonia oxidizers in the ocean. The presence of excess NO2− [NO subscript 2 overscore] (up to 1 mM) in the growth medium also increased N2O [N subscript 2 O] yields by an average of 70% to 87% depending on O2 [O subscript 2] concentration. We made stable isotopic measurements on N2O [N subscript 2 O] from these cultures to identify the biochemical mechanisms behind variations in N2O [N subscript 2 O] yield. Based on measurements of δ15Nbulk [delta superscript 15 N superscript bulk], site preference (SP = δ15Nα−δ15Nβ [delta superscript 15 N superscript alpha - delta superscript 15 N superscript beta]), and δ18O [delta superscript 18 O] of N2O [N subscript 2 O] (δ18O-N2O [delta superscript 18 O - N subscript 2 O]), we estimate that nitrifier-denitrification produced between 11% and 26% of N2O [N subscript 2 O] from cultures grown under 20% O2 [O subscript 2] and 43% to 87% under 0.5% O2 [O subscript 2]. We also demonstrate that a positive correlation between SP and δ18O-N2O [delta superscript 18 O - N subscript 2 O] is expected when nitrifying bacteria produce N2O [N subscript 2 O]. A positive relationship between SP and δ18O-N2O [delta superscript 18 O - N subscript 2 O] has been observed in environmental N2O [N subscript 2 O] datasets, but until now, explanations for the observation invoked only denitrification. Such interpretations may overestimate the role of heterotrophic denitrification and underestimate the role of ammonia oxidation in environmental N2O [N subscript 2 O] production

    Going Beyond Counting First Authors in Author Co-citation Analysis

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    The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed

    Variations on the Author

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    “Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship

    Appropriate Similarity Measures for Author Cocitation Analysis

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    We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis

    The biogeochemistry of marine nitrous oxide

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    Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2011Atmospheric nitrous oxide N2O concentrations have been rising steadily for the past century as a result of human activities. In particular, human perturbation of the nitrogen cycle has increased the N2O production rates of the two major sources of this greenhouse gas, soil and the ocean. Nitrification, and particularly ammonia oxidation, is one of the major processes that produces N2O in the ocean. In this thesis, a series of stable isotopic methods have been used to characterize the biogeochemical controls on N2O production by marine nitrification as well as the natural abundance stable isotopic signatures of N2O produced by marine nitrifiers. This thesis shows that in addition to chemical controls on N2O production rates such as oxygen (O2) and nitrite (NO-2) concentrations, there are also biological controls such as nitrifier cell abundances and coastal phytoplankton blooms that may influence N2O production by ammonia oxidizers as well. Ammonia oxidizers can produce N2O through two separate biochemical mechanisms that have unique isotopic signatures. Using culture- based measurements of these signatures, we conclude that one of these pathways, nitrifier- denitrification, may be a significant source of N2O produced in the South Atlantic Ocean and possibly the global ocean.Funding for this work was provided by NSF/OCE 05-26277, the Andrew W. Mellon Founda- tion Awards for Innovative Research, the Cecil H. and Ida M. Green Technology Innovation Awards, and the W. M. Keck Foundation

    Dispelling the Myths Behind First-author Citation Counts

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    We conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more sophisticated methods

    Author Index

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    koamabayili/VECTRON-author-checklist: VECTRON author checklist

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    We have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
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