1,721,134 research outputs found
Different regulation of aryl hydrocarbon receptor-regulated genes in response to dioxin in undifferentiated and neuronally differentiated human neuroblastoma SH-SY5Y cells
No full textSome environmental pollutants derived from industrial processes have been suggested to be responsible for neurological impairment in children, especially in heavily polluted areas. Since these compounds are usually activators of aryl hydrocarbon receptor (AhR), it would be important to better understand the molecular pathways downstream of AhR leading to neural deficits. To this purpose, appropriate in vitro human neural model is much needed. Here we have investigated whether undifferentiated and neuronally differentiated human neuroblastoma cells, SH-SY5Y cells, can provide a suitable model for monitoring AhR activity induced by environmental pollutants, focusing on 2,3,7,8-tetrachlordibenzo-p-dioxin (TCDD), a known activator of AhR. Further characterization of differentiated SH-SY5Y showed an increase in AhRR (aryl hydrocarbon receptor repressor), no change in ARNT1 (AhR nuclear translocator 1), and a decrease in ARNT2 expression with differentiation; in contrast, AhR was undetectable in both undifferentiated and differentiated cells. Nonetheless, treatment of parental as well as differentiated SH-SY5Y cells with TCDD resulted in the induction of AhR-regulated genes, CYP1A1 and CYP1B1; AhRR expression was also affected, but to a much smaller extent. These results indicate that undifferentiated SH-SY5Y are less sensitive to TCDD than neuronally differentiated ones, suggesting a higher resistance of the undifferentiated tumor cells to toxic insults. They also suggest that TCDD in these cells may not act via direct activation of AhR that is undetectable in SH-SY5Y as well as in differentiated neurons. Hence, these cells do not provide an appropriate model for studying ligand-mediated activation of AhR
Marine ostracod turnover tracks orbitally forced palaeoenvironmental changes at the Lower-Middle Pleistocene transition: the case study of the Valle di Manche section (Calabria, southern Italy)
No full textOstracods, small crustaceans living in almost every aquatic depositional setting, are widely used in palaeoenvironmental reconstructions due to their well-known ecological sensitivity. A close connection between the composition of ostracod fauna and the Milankovitch climate-eustatic variability has been documented in several Plio-Pleistocene marine sections of the Central Mediterranean area. The Valle di Manche section (VdM; Calabria, southern Italy), one of the suitable candidates to host the Global Stratotype Section and Point (GSSP) of the Ionian Stage-Middle Pleistocene, represents an ideal venue where to investigateostracodturnoverinrelationtoorbitallyforcedpalaeoenvironmentalchanges,beingfirmlyconstrained in time and well documented by a number of independent climatic proxy. A high-resolution, quantitative analysis of the ostracod fauna has been undertaken on the middle part of the VdM, ca. 30 m-thick and showing two T-R cycles developed at the Lower-Middle Pleistocene transition (late MIS 21 to early MIS 18). Within each cycle, a relatively thin, fining-upward transgressive muddy unit is overlain by gradually coarsening upward and more expanded regressive silty to sand packages. A total of 40 samples have been selected to characterise the whole spectrum of lithofacies and detect highfrequency palaeoenvironmental variations especially within homogeneous clayey stratigraphic intervals. Taxa typical of circalittoral (>70/100 m) depths (e.g., Bosquetina dentata, Cytherella vulgatella, Cytheropteron monoceros, Pterygocythereis ceratoptera and Krithe species), commonly accompanied by the lower circalittoralbathyal species Henryhowella sarsii, occur within the fine-grained units developed during the full interglacials of MIS 21 and MIS 19. Furthermore, ostracod assemblages document that the oxygen availability at the sea floor changed during MIS 19. In contrast, a less-diversified ostracod fauna dominated by Aurila convexa, a species preferring vegetated sandy substrates in the upper circalittoral zone, characterises coarser glacial deposits. Atop the sandy successions A. convexa is partially replaced by Semicytherura ruggierii, suggesting a further decrease in palaeobathymetry and, possibly, an increase in riverine influence. Within each T-R cycle vertical changes in ostracod fauna track both an overall deepening-shallowing upward trendandhigh-frequencyvariationsinstratalstackingpatterns,allowingthepreciseidentificationofkeysequence stratigraphic surfaces: Transgressive Surface (TS) and Maximum Flooding Surface (MFS). The former, which is marked by a sharp increase in Krithe, Cytherella and Cytheropteron species, develops during the late d18O glacial termination. The MFS, invariably highlighted by concomitant highest and lowest percentages of H. sarsii and A. convexa respectively, matches the lightest d18O values recorded by foraminifers and corresponding to full interglacial conditions. Within the MIS 19 muddy unit, the MFS is identified few decimeters above the Pitagora ash layer, a prominent bed close to the Matuyama-Brunhes geomagnetic reversal
Going Beyond Counting First Authors in Author Co-citation Analysis
Full text linkThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Variations on the Author
Full text link“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Episyenites within the Tauern Window metagranitoids: unpredictable?
Full text linkThe core of the Tauern tectonic window (Eastern Alps) consists of dominant pre-Alpine granitoids (∼ 295 Ma)\ud
that were metamorphosed and deformed during the Alpine orogenesis (at ∼ 30 Ma). Ductile deformation at peak conditions (550-600 ̊C and 0.5-0.7 GPa) was followed by cataclastic faulting (Pennacchioni and Mancktelow, 2007). Both deformation phases occurred in a fluid-rich environment with formation of veins filled with quartz-calcite-biotite-feldspar and quartz-chlorite-epidote-adularia-calcite, respectively. Faults are typically low displacement strike-slip structures (offset < 1m) organized in en-echelon arrays at different scales with a stepping geometry consistent with the sense of fault slip (e.g. left-stepping for dextral slip). Fault stepovers include pervasive fracturing dominated by a set of antithetic faults (Pennacchioni and Mancktelow, 2013). These faults were locally exploited by episyenitic alteration which represented the "last" event of fluid-rock interaction in the Tauern meta-granitoids. Episyenites within metagranodiorites have a macroscopic porosity in the range between 25 and 35% volume (determined by microtomography), mostly derived from dissolution of multi-mm-sized quartz. Recent glacier-polished outcrops provide a unique opportunity to investigate the relationships between episyenites and overprinted faults. Detailed field mapping of a selected outcrop indicates that episyenites: (i) are spatially linked to precursor faults and statically overprinted all previous structures; (ii) occur discontinuously along faults; (iii) have a thickness (of as much as a few meters) that does not correlate with either the amount of fault slip or the density of the fracture network; (iv) developed independently of rock type (passing "undisturbed" lithologic boundaries with conspicuous variations of quartz grain size of the protolith lithology). Although the faults in the studied outcrop are extensively decorated by relatively large volumes of episyenite, occurrences of episyenite in the Tauern granitoids are generally rare. This study indicates that there is not a simple way to predict the location and the extent of episyenite alteration from the geometry and fracturing patterns of the network of precursor cataclastic faults.\ud
The dominant quartz dissolution during episyenitization was accompanied and/or followed by: (i) pervasive substitution of oligoclase and chlorite/biotite of the metagranodiorite by albite and clay-minerals, respectively, and (ii) limited precipitation of new adularia, anatase, calcite, hematite and zeolite within pores. Isotopic data from calcite filling the episyenite porosity suggest a meteoric source of the fluids (δ18 O (SMOW) ≈ -2 per mil). In contrast, fluids synkinematic with previous episodes of fluid-rock interaction during faulting and ductile shearing had a deeper origin (δ18O (SMOW) ≈ 8-9 per mil).\ud
References\ud
Pennacchioni, G., Mancktelow, N.S., 2007. J. Struct. Geol. 29, 1757-1780.\ud
Pennacchioni, G., Mancktelow, N.S., 2013. Geol. Soc. Am. Bull. 125, 1468-1483
Appropriate Similarity Measures for Author Cocitation Analysis
Full text linkWe provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis
Dispelling the Myths Behind First-author Citation Counts
Full text linkWe conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued
use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation
counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more
sophisticated methods
Southwest Pacific deep-water carbonate chemistry during the Mid-Pleistocene Transition
Full text linkAfter more than 40 years of research, there is still wide disagreement in defining when the Mid-Pleistocene Transition (MPT) occurred, with climate reconstructions ranging from an abrupt versus gradual transition that began as early as 1500 ka and ended as late as 600 ka. Our recent work in the Southwest Pacific (Ocean Drilling Program Site 1123) has provided some evidence for a rapid transition, suggesting that the MPT was initiated by an abrupt increase in global ice volume 900 thousand years ago [1]. This study uses shallow-infaunal benthic foraminifera Uvigerina spp. to disentangle the contributions of deep-water temperature (using Mg/Ca ratios) and ice volume to the oxygen isotopic composition of foraminiferal calcite over the last 1.5 Ma. The resulting sea-level reconstruction across the MPT shows that the critical step in ice-volume variation was associated with the suppression of melting in Marine Isotope Stage (MIS) 23, followed by renewed ice growth in MIS 22 to yield a very large ice sheet with 120 m of sea level lowering.
Here, we built on this work with the aim to investigate further the abrupt event centered on MIS 24 to 22 (the ‘900-ka event’) and try to shed some light on the processes and mechanisms that caused the MPT. Different hypotheses account for the origin of the MPT as a response to long-term ocean cooling, perhaps because of lowering CO2. To better quantify the role of the carbon system during the MPT, we reconstruct past changes in bottom water inorganic carbon chemistry from the trace element (B/Ca) and stable isotopic composition of calcite shells of the infaunal benthic foraminifera Uvigerina spp. from 1100 ka to 350 ka at ODP Site 1123. This site was retrieved from Chatham Rise, east of New Zealand in the Southwest Pacific Ocean (41o47.2’S, 171o 29.9’ W, 3290 m water depth) and lies under the Deep Western Boundary Current (DWBC) that flows into the Pacific Ocean, and is responsible for most of the deep water in that ocean; DWBC strength is directly related to processes occurring around Antarctica. The ratio of boron to calcium (B/Ca) in benthic foraminifer shells has proven to be a reliable indicator of the calcite saturation state of ocean bottom waters. The comparison between benthic foraminifera δ18O and δ13C shows a similar trend at ODP Site 1123, implying a close relationship between these climate and carbon cycle signals, and we use our B/Ca record reconstructed from the same samples to explore the potential processes behind this tight coupling.
These results permit preliminary discussion on the deep-water carbonate saturation state during glacial/interglacial cycles. Deep-water temperatures estimates using Mg/Ca and oxygen isotopic composition of seawater (δ18Osw) are available from Site 1123 for the last 1.5 million years [1] and the phase relationship between the different signals is tentatively assessed for the early/middle Pleistocene, when different patterns of climate variability have been inferred from marine and ice cores records.
[1] Elderfield et al. (2012). Evolution of ocean temperature and ice volume through the Mid Pleistocene Climate Transition. Science, vol. 337, 6095, 704-70
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