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    Ecological consequences of non-native fish invasion in Eastern Cape headwater streams

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    The introduction, spread and concomitant impacts of non-native species are a global problem. Fish are among the most widely introduced vertebrate groups, with their impacts affecting multiple levels of organisation- from individuals, populations and communities, to entire ecosystems. In South Africa, the largest perceived threat to range-restricted endemic headwater stream fishes is said to be invasion by non-native fishes, however, as is the case elsewhere, invasive impacts are often a case of risk perception rather than actual risk analysis. Two range-restricted headwater species, the Eastern Cape redfin Pseudobarbus afer and the Border barb Barbus trevelyani are redlisted by the International Union for the Conservation of Nature (IUCN) as ‘Endangered’, primarily due to invasion by non-native fishes. To investigate invasions in South Africa, and provide a quantitative estimate of the impact of non-native fishes on the two imperilled endemics, P. afer and B. trevelyani, the overall aims of this thesis were to: (A) Provide a literature review on non-native fish invasions in South Africa; (B) Using two case studies on the headwaters of the perennial Keiskamma and episodic Swartkops River systems, investigate the naturalisation-invasion continuum to provide a holistic view of the invasion process in these variable environments. The specific thesis objectives were: (1) Reviewing current knowledge of invasive impacts of non-native fishes in South Africa; (2) Investigating invasibility of headwater stream environments by non-native fishes; (3) Determining the establishment success of non-native fishes, (4) Assessing the spatial and temporal impacts of invasion; (5) Understanding mechanisms responsible for non-native fish impacts; (6) Investigating the threat of non-native fish invasion on the genetic diversity of two the two headwater fishes, P. afer and B. trevelyani. Results from the literature review of fish invasions (Chapter 1) showed that South Africa has a long history of non-native fish introductions, spanning two and a half centuries. Currently, 55 species have been introduced or translocated. Many of these introduced species have become fully invasive (36%). Their impacts also span multiple levels of biological organisation. There was a general paucity of studies on fish invasions (38 studies), however, of those conducted, reviewed studies placed emphases on invasive impacts (25 studies) and the transport, introduction, establishment and spread stages of the invasion process were largely ignored. The two study systems, the Swartkops and Keiskamma Rivers, were heavily invaded and numbers of introduced species surpassed that of natives (Chapter 2, 3 and 5). Headwater streams had varying invasibility and a number of non-native species were successfully established (Chapter 2, 3, 5 and 6). The remainder of the invasions were casual incursions into headwater streams from source populations in mainstream and impoundment environments which were invasion hotspots. Irrespective of establishment, four predatory invaders (largemouth bass Micropterus salmoides, smallmouth bass M. dolomieu, brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss) impacted heavily on native fish communities (Chapter 3, 4 and 5). Two broad types of invasion were documented, top down invasion by non-native O. mykiss and S. trutta and upstream invasion by M. salmoides and M. dolomieu (Chapter 3 and 5). Their impacts included changes in community structure, extirpation from invaded stream reaches resulting in contracted distribution, and isolation and fragmentation of native fish populations. The impacts of non-native predatory fishes were particularly acute for P. afer and B. trevelyani. Where non-native predatory fish occurred, P. afer and B. trevelyani had been extirpated (Chapter 3 and 5). As a result both native species exhibited contracted distributions (>20% habitat loss due to invasion). Upstream invasion by centrarchids isolated and fragmented P. afer populations into headwater refugia, while top down invasion by salmonids excluded B. trevelyani from invaded, more pristine stream reaches, by forcing the species into degraded unsuitable lower stream reaches. Predation also disrupted population processes such as adult dispersal for P. afer, and centrarchid-invaded zones acted as demographic sinks, where adults dispersing through invaded reaches were rapidly depleted. While the Mandela lineage of P. afer exhibited little within or between drainage genetic structuring, B. trevelyani was >4% divergent between drainages, and up to 2% divergent between streams within the Keiskamma River system (Chapter 7). The distribution of genetic diversity for B. trevelyani also indicated that the loss of diversity was imminent without immediate conservation interventions. This thesis has provided conclusive evidence that native fishes are vulnerable to invasion and that non-native predatory fishes have significant impacts on native fishes in Eastern Cape headwater streams. If management and conservation measures are implemented, the unwanted introduction and spread of non-native fishes may be restricted, allowing native fishes opportunities for recovery

    The impact of angling on smallmouth and largemouth yellowfish, labeobarbus aeneus and labeobarbus kimberleyensis, in Lake Gariep, South Africa

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    A large sportfishery that targets both smallmouth (Labeobarbus aeneus) and largemouth (Labeobarbus kimberleyensis) yellowfish exists in South Africa. Both species have high conservation priority, and no assessments documenting the effect of angling on L. aeneus and L. kimberleyensis have been undertaken. The overall aim of this study was to provide an assessment of the impact of angling on L. aeneus and L. kimberleyensis. The specific objectives of this study were to characterise the sectors utilising Lake Gariep, document catch, effort and total catch for the fishery as well as the locality specific biology of L. aeneus and L. kimberleyensis. The study was undertaken on Lake Gariep, South Africa's largest impoundment, situated on the Orange River system in central South Africa. Subsistence fishers were the dominant user group, constituting 60 % of the fishery, the remainder constituted recreational anglers. Angler catches were dominated by carp (Cyprinus carpio; 74 %), followed by mudfish (Labeo capensis; 13 %) and smallmouth yellowfish (8 %). Catches of largemouth yellowfish contributed < 0.5 % to the total catch. The relative abundance of species by weight differed by area (χ² test of independence: χ² = 182, df = 4, p ≤ 0.05). On any sampling day time fished was the best predictor for differences in probability of capture (PC) (Wald X²(1) = 7.169, p = 0.007). The probability of capturing L. aeneus differed significantly between month (Wald X²(5) = 20.690, p = 0.000) and region (Wald X²(3) = 46.755, p = 0.000). The single best predictor of differences in log abundance and non-zero CPUE was region (Factorial ANOVA p ≤ 0.05). Mean CPUE ranged from 0.21 ± 0.06 kg. man⁻¹.hr⁻¹ to 0.82 ± 0.11 kg. man⁻¹.hr⁻¹ in the OV region and 0.42 ± 0.10 kg. man⁻¹.hr⁻¹ to 1.17 ± 0.24 kg. man⁻¹.hr⁻¹ in the GD region. Angler effort was higher in OV than in GD and ranged from 17 ± 3 anglers/day to 45 ± 9 anglers/day and 6 ± 1 anglers/day to 41 ± 8 anglers/day, respectively. Total catch was higher in the GD 46.0 [95 % CI = 15:102.6] t. period⁻¹ than the OV region 40.0 [95 % CI = 13.9:89.6] t. period⁻¹. The total catch from the Lake Gariep fishery between March and December 2007 was estimated to be 86.0 [95 % CI = 40.4:154.8] t. period⁻¹. Age and growth was determined using whole otoliths. The growth of L. aeneus was best described by the von Bertalanffy growth model as Lt = 481.80 (1- e⁻°·²²⁽t⁺°·⁶¹⁾). Gonadal development for L. aeneus was seasonal, with the gonadosomatic index peaking in January, revealing a distinct spawning season. The length at 50 % maturity for female L. aeneus was attained at a fork length of 354.7 mm. Natural mortality (M) was estimated at 0.55 year⁻¹. The growth of L. kimberleyensis was described by the von Bertalanffy growth model as Lt = 763.22 (1- e⁻°·¹¹⁽t⁺°·⁶³⁾). Only 6 mature female and 15 mature male L. kimberleyensis were recorded during the study period. The smallest mature female was a 390 mm FL stage four female and the earliest recorded mature male was a 337 mm FL, ripe running male. Natural mortality (M) was estimated at 0.08 year⁻¹ for L. kimberleyensis. Per recruit analysis indicated that current fishing mortality reduces the L. aeneus spawner biomass by 7 %, which is considered negligible. Labeobarbus kimberleyensis forms an insignificant proportion of anglers catches and stock status is currently considered pristine

    Going Beyond Counting First Authors in Author Co-citation Analysis

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    The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed

    Variations on the Author

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    “Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship

    Appropriate Similarity Measures for Author Cocitation Analysis

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    We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis

    Dispelling the Myths Behind First-author Citation Counts

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    We conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more sophisticated methods

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    koamabayili/VECTRON-author-checklist: VECTRON author checklist

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    We have done our best to complete the author checklist relating to the use of animals in the hut study. Note that the objective for the hut study was to evaluate the IRS treatment applications for residual efficacy against Anopheles mosquitoes, including the local An. coluzzii mosquito population. Cows were only used to attract mosquitoes into the huts and no tests were carried out directly on the cows. The author checklist is intended for use with studies where experiments are carried out on animals, which is why we have had such difficulty in completing this for the hut study, as many of the questions do not relate to how the cows were used
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