1,721,054 research outputs found
Aligned 5-locus dataset of Inocybe sect. Rimosae s.s. and Inosperma clades
No full textThis is the aligned, concatenated ITS1–5.8S–ITS2–nrLSU–mtSSU dataset of Inocybe sect. Rimosae s.s. and Inosperma
clades, used for molecular phylogenetic reconstruction with IQ-TREE under partitioned models.
New species of Inocybe sect. Rimosae
from Pakistan revealed by multi-locus phylogenetic reconstruction
Malka Saba, Danny Haelewaters, Donald H. Pfister, Abdul Nasir Khalid
Abstract
During fungal surveys between 2012 and 2014 in pine-dominated
forests of the western Himalayas in Pakistan, several collections of Inocybe
(Agaricales, Inocybaceae) were made. These were documented based on morphological
and molecular data. During this work, three new species came to light, which
are here formally described as Inocybe brunneoumbonata,
I.
pinophila, and I. triacicularis. These species are
part of sect. Rimosae s.s. and belong
to or are closely related to Rimosae s.s.
subclade A. Macro- and micro-morphological descriptions, illustrations, and molecular
phylogenetic reconstructions of the studied taxa are provided. The new species
are differentiated from their close relatives by basidiospore size and coloration
of basidiomata. Molecular phylogenetic relationships are inferred using ITS
(ITS1–5.8S–ITS2), nrLSU, and mtSSU sequence data. All three newly described
taxa likely share an ectomycorrhizal association with trees in the genus Pinus.
Keywords
3 new
taxa, ectomycorrhizal fungi, Inocybaceae, Pakistan, phylogeny, Pinus
roxburghii, taxonomy
</div
Aligned nrLSU dataset of Inocybe sect. Rimosae s.s. subclade A
No full textThis is the aligned nuclear 28S rRNA gene (nrLSU) dataset of Inocybe sect. Rimosae s.s. subclade A, used for molecular phylogenetic reconstruction with IQ-TREE under partitioned models.
New species of Inocybe sect. Rimosae
from Pakistan revealed by multi-locus phylogenetic reconstruction
Malka Saba, Danny Haelewaters, Donald H. Pfister, Abdul Nasir Khalid
Abstract
During fungal surveys between 2012 and 2014 in pine-dominated
forests of the western Himalayas in Pakistan, several collections of Inocybe
(Agaricales, Inocybaceae) were made. These were documented based on morphological
and molecular data. During this work, three new species came to light, which
are here formally described as Inocybe brunneoumbonata,
I.
pinophila, and I. triacicularis. These species are
part of sect. Rimosae s.s. and belong
to or are closely related to Rimosae s.s.
subclade A. Macro- and micro-morphological descriptions, illustrations, and molecular
phylogenetic reconstructions of the studied taxa are provided. The new species
are differentiated from their close relatives by basidiospore size and coloration
of basidiomata. Molecular phylogenetic relationships are inferred using ITS
(ITS1–5.8S–ITS2), nrLSU, and mtSSU sequence data. All three newly described
taxa likely share an ectomycorrhizal association with trees in the genus Pinus.
Keywords
3 new
taxa, ectomycorrhizal fungi, Inocybaceae, Pakistan, phylogeny, Pinus
roxburghii, taxonomy</div
ITS+LSU consensus tree of Helotiales
No full textThis is the consensus tree resulting from Maximum Likelihood inference of the ITS+LSU sequence dataset of Helotiales carried out using IQ-tree under partitioned models (GTR+I+G for
ITS, TIM3+I+G for LSU) and ultrafast
bootstrapping with 1000 replicates. --
Annabella australiensis gen. & sp. nov. (Helotiales,
Cordieritidaceae) from South Australian mangroves
Sally C. Fryar, Danny Haelewaters and David E.A. Catcheside
Abstract: A new genus of helotialean fungi, Annabella gen. nov. (Cordieritidaceae), is described to accommodate
Annabella australiensis sp. nov. This
species was collected on attached decaying wood of Avicennia marina, a common mangrove species found in protected
waters of southern Australia. Annabella
is distinctive among Cordieritidaceae in having relatively small perithecioid,
hyaline to yellowish apothecia and by the absence of an ionomidotic reaction.
The apothecial shape and size of Annabella
is most similar to Skyttea. The molecular
phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci
confirms the placement of Annabella within
Cordieritidaceae, as a sister clade to Skyttea.</p
Aligned 5-locus dataset of Inocybe sect. Rimosae s.s. and Inosperma clades
No full textThis is the aligned, concatenated ITS1–5.8S–ITS2–nrLSU–mtSSU dataset of Inocybe sect. Rimosae s.s. subclade A, used for molecular phylogenetic reconstruction with IQ-TREE under partitioned models.
New species of Inocybe sect. Rimosae
from Pakistan revealed by multi-locus phylogenetic reconstruction
Malka Saba, Danny Haelewaters, Donald H. Pfister, Abdul Nasir Khalid
Abstract
During fungal surveys between 2012 and 2014 in pine-dominated
forests of the western Himalayas in Pakistan, several collections of Inocybe
(Agaricales, Inocybaceae) were made. These were documented based on morphological
and molecular data. During this work, three new species came to light, which
are here formally described as Inocybe brunneoumbonata,
I.
pinophila, and I. triacicularis. These species are
part of sect. Rimosae s.s. and belong
to or are closely related to Rimosae s.s.
subclade A. Macro- and micro-morphological descriptions, illustrations, and molecular
phylogenetic reconstructions of the studied taxa are provided. The new species
are differentiated from their close relatives by basidiospore size and coloration
of basidiomata. Molecular phylogenetic relationships are inferred using ITS
(ITS1–5.8S–ITS2), nrLSU, and mtSSU sequence data. All three newly described
taxa likely share an ectomycorrhizal association with trees in the genus Pinus.
Keywords
3 new
taxa, ectomycorrhizal fungi, Inocybaceae, Pakistan, phylogeny, Pinus
roxburghii, taxonomy</div
ITS+LSU sequence dataset of Helotiales
No full textThis is a crude aligned and concatenated ITS+LSU rDNA dataset of Helotiales. Taxonomic sampling covers 25 families (Arachnopezizaceae,
Calloriaceae, Cenangiaceae, Chaetomellaceae, Chlorociboriaceae, Cordieritidaceae,
Dermateaceae, Drepanopezizaceae, Gelatinodiscaceae, Godroniaceae, Helotiaceae, Heterosphaeriaceae,
Hyaloscyphaceae, Lachnaceae, Leptodontidiaceae, Loramycetaceae, Mitrulaceae, Mollisiaceae,
Pezizellaceae, Ploettnerulaceae, Roesleriaceae, Rutstroemiaceae, Sclerotiniaceae,
Vibrisseaceae) and a number of taxa without clear affinities.--Annabella australiensis gen. & sp. nov. (Helotiales,
Cordieritidaceae) from South Australian mangroves
Sally C. Fryar, Danny Haelewaters and David E.A. Catcheside
Abstract: A new genus of helotialean fungi, Annabella gen. nov. (Cordieritidaceae), is described to accommodate
Annabella australiensis sp. nov. This
species was collected on attached decaying wood of Avicennia marina, a common mangrove species found in protected
waters of southern Australia. Annabella
is distinctive among Cordieritidaceae in having relatively small perithecioid,
hyaline to yellowish apothecia and by the absence of an ionomidotic reaction.
The apothecial shape and size of Annabella
is most similar to Skyttea. The molecular
phylogenetic analysis of a concatenated dataset of three ribosomal nuclear loci
confirms the placement of Annabella within
Cordieritidaceae, as a sister clade to Skyttea. </div
Going Beyond Counting First Authors in Author Co-citation Analysis
Get PDFThe present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation
counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings
are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that
only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into
account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed
Data from "Hesperomyces harmoniae, a new name for a common ectoparasitic fungus on the invasive alien ladybird Harmonia axyridis"
No full textVariations on the Author
Get PDF“Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship
Laboulbeniales fungal ectoparasites on cave arthropods: Remarkable models for ecology and evolution
No full text- …
