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    Effetti del knockdown del recettore degli estrogeni Î22 (esr2a) sullo sviluppo di Danio rerio

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    ABSTRACT This thesis work is focused on the study of the role of the maternal mRNA for the estrogen receptor erβ2 (esr2a) on the long-term epigenetic modulation of development in zebrafish (Danio rerio). Experimental evidence indicates that steroid hormones may participate in the maternal programming of the development in fish (Auperin and Geslin, 2008) and mammals (Darnaudéry and Maccari, 2007). In particular, estrogens secreted by the granulosa cells during vitellogenesis may be incorporated in fish oocytes (Hines et al, 1999) with possible significant effects on the subsequent ontogeny of the offspring. In the present work on zebrafish, the expression levels of the mRNA coding for the Esr2a receptor were found to be high in ovulated oocytes and early embryos. The concentration of these transcripts decreased along the 8 hours post-fertilization (hpf) and then returned to rise with the onset of embryonic transcription. The gene knockdown by morpholino antisense technology was applied to investigate the functional role of the esr2a in zebrafish development. Two different morpholinos were used: the first, designed on the ATG start translation codon, determines the knockdown by blocking the translation of both maternal and zygotic transcripts (esr2aATGMO); the second interferes with the correct splicing process to block only the post-transcriptional maturation of the zygotic messenger (esr2aSPLICMO). The embryos microinjected with esr2aATGMO died between 12 and 14 days after fertilization (dpf) and displayed several morphological alterations compared to non-injected embryos (WT) or to controls microinjected with a standard unrelated morpholino (StdMO). The morphant phenotype of fish treated with esr2aATGMO was characterized by delayed body growth, curved shape, abnormal development of brain and splanchnocranium, enlarged and hemorrhagic pericardial cavity, uninflated swim bladder, rudimental caudal fin and abnormal circular swimming. The specificity of the effects was verified by co-injecting the esr2aATGMO with a morpholino inactivating the p53 protein. The phenotype obtained with the co-injection corresponded to that of fish injected with esr2aATGMO alone. This shows that the effects of the morpholino for esr2a are specific and not due to the hyperactivation of p53 caused by the microinjection. Resumption of the WT phenotype was achieved by co-injecting esr2aATGMO with the transcript for zebrafish Ers2a bearing 8 silent mutations in the region complementary to the morpholino. This demonstrates that the binding of the oligonucleotide to its target was very specific. To further investigate the role of the gene esr2a, an experiment of gain of function was performed by increasing the concentration of the receptor transcript. Developmental abnormalities were also monitored during first days after fertilization following the microinjection of the mRNA for esr2a into eggs permeated with a solution of 17β-estradiol (E2). The embryos treated with esr2aSPLICMO were comparable to controls. This morpholino interferes in the process of maturation of the zygotic transcript, leading to the loss of the third exon and to a translated protein that doesn't work. Significantly, this result suggests that the observed phenotypic changes after treatment with esr2aATGMO are mainly due to the inactivation of the maternal transcript. The in situ hybridization analysis using developmental markers highlighted a possible up-regulation of empty spiracles homeobox 1 (emx1) and of sine oculis homeobox homolog 3a (six3a) at 24 and 48 hpf and of sonic hedgehog (shha) at 48 hpf. Staining with alcian blue revealed an altered pattern of cranial cartilage organization at 6 dpf in fish treated with esr2aATGMO. Subsequent hybridization with cranial markers showed a slightly different expression profiles between WT and morphants of the gene distal-less homeobox gene 2a (dlx2a) at 48 hpf and neurogenic differentiation (NeuroD) at 24 hpf. Two-color microarray analysis of the total genome of zebrafish was used to study gene expression in embryos at 8 and 48 hpf after treatment with esr2aATGMO compared to controls injected with StdMO. Analysis at 8 hpf highlights changes in gene expression due mainly to the maternal receptor knockdown. The analysis at 48 hpf allows to detect morpholino effects due to the inactivation of embryonic transcripts as well. At 8 hpf, 237 transcripts were significantly up-regulated, while 219 were down-regulated as a result of the absence of the Esr2a receptor in embryos injected with esr2aATGMO. At 48 hpf, 165 and 124 transcripts, presumably of zygotic origin, were up- and down-regulated, respectively. Among these, only 8 were in common with those up-regulated at 8 hpf and 17 with the down-regulated ones. Interestingly, transcripts involved in the negative regulation of cell proliferation were up-regulated. It can be assumed that the absence of Esr2a leads to a decrease in cell proliferation, perhaps due to an increased apoptosis. This would be in keeping with the TUNEL analysis on the rate of cell death, which showed a greater number of apoptotic cells in the brain of morphant fish at 24 and 48 hpf as compared to controls. The analysis of embryonic vascularization in the transgenic line TG (fli1:EGFP) at 3 and 6 dpf, based on the vascular activity of endogenous alkaline phosphatase, evidenced a marked decrease in subintestinal vessel formation and derangement in the distribution patterns of trunk and tail vessels in fish treated with esr2aATGMO. These results suggest that the development of zebrafish is influenced by epigenetic control dependent on maternal esr2a mRNA and interaction with the inheritance of maternal estrogens.RIASSUNTO Il mio lavoro di tesi si è focalizzato sullo studio del ruolo svolto dagli mRNA ovocitari di origine materna codificanti la forma erβ2 (esr2a) del recettore degli estrogeni nella modulazione epigenetica a lungo termine dello sviluppo in zebrafish (Danio rerio). Crescenti evidenze indicano che gli ormoni steroidei possono partecipare alla programmazione materna nei processi di sviluppo dei pesci (Auperin e Geslin, 2008) e dei mammiferi (Darnaudéry e Maccari, 2007). In particolare, gli estrogeni secreti dalle cellule della granulosa durante la vitellogenesi possono essere accumulati negli ovociti dei pesci (Hines et al., 1999) con un possibile ruolo di programming iniziale avente effetti profondi sulla ontogenesi successiva. Nel presente lavoro sullo zebrafish, è stato osservato mediante ibridazione in situ che i livelli di espressione degli mRNA che codificano per il recettore Esr2a sono alti negli oociti ovulati e nell'embrione subito dopo la fecondazione. La concentrazione di questi trascritti diminuisce nelle 8 ore che seguono la fecondazione (hpf), per poi riprendere a crescere dopo l'inizio della trascrizione embrionale, confermando precedenti dati di qRT-PCR (Pikulkaew et al., 2010). Il ruolo funzionale del gene esr2a è stato studiato mediante silenziamento genico ottenuto con la tecnologia del morfolino antisenso utilizzando due diversi morfolini microiniettati nelle uova appena deposte: il primo, progettato sull'ATG d'inizio traduzione, determina il knockdown mediante blocco della traduzione dei trascritti di origine materna e zigotica (esr2aATGMO), mentre il secondo interferisce nel corretto processo di splicing per bloccare la maturazione post-trascrizionale del solo messaggero zigotico (esr2aSPLICMO). Gli embrioni ottenuti dopo microiniezione di esr2aATGMO presentano numerose alterazioni morfologiche rispetto agli embrioni non iniettati (WT) o microiniettati con morfolino standard di controllo (StdMO) e muoiono tra i 12 e i 14 giorni dopo la fecondazione (dpf). Il fenotipo morfante è caratterizzato da: ritardo nella crescita corporea, forma ricurva, anormale sviluppo di cervello e splancnocranio, cavità pericardica ampia ed emorragica, vescica natatoria non insufflata, pinna caudale rudimentale e anomala natazione circolare. La specificità degli effetti ottenuti con la microiniezione è stata verificata anche mediante coiniezione, con l'esr2aATGMO, di un morfolino inattivante la proteina p53. Il fenotipo ottenuto silenziando anche p53 corrisponde a quello morfante; questo dimostra che gli effetti di esr2aATGMO sono specifici e non collegati ad un'iperattivazione di p53 causata dall'iniezione. E' stato possibile inoltre riottenere il fenotipo WT mediante la coiniezione con l'esr2aATGMO del trascritto di zebrafish per Esr2a mutato nella regione complementare al morfolino. Questo dimostra che il legame dell'oligonucleotide al target è estremamente specifico. Per approfondire in maniera più dettagliata la funzione del gene esr2a ho eseguito un esperimento di gain of function con il quale ho aumentato la concentrazione del trascritto del recettore. In un esperimento successivo ho iniettato l'mRNA per esr2a e trattato le uova con 17β-estradiolo (E2) per osservare eventuali anomalie nei primi giorni dopo la fecondazione. Dalla microiniezione di esr2aSPLICMO si ottengono embrioni con fenotipo paragonabile ai controlli. Questo morfolino interferisce nel processo di maturazione del messaggero zigotico, portando alla perdita del terzo esone e a una proteina tradotta non funzionante. Il risultato che ho ottenuto E' un dato importante, perchè suggerisce come le variazioni osservabili nel fenotipo esr2aATGMO siano imputabili principalmente all'inattivazione del trascritto materno. Un'analisi mediante ibridazione in situ utilizzando marcatori di sviluppo ha evidenziato nei morfanti esr2aATGMO una possibile up-regolazione di empty spiracles homeobox 1 (emx1) e sine oculis homeobox homolog 3a (six3a) a 24 e 48 hpf e di sonic hedgehog a (shha) a 48 hpf. La colorazione con alcian blu delle cartilagini craniche ha rivelato un pattern alterato a 6 dpf. Le successive analisi mediante in situ di alcuni marcatori della regione cranica hanno evidenziato un profilo di espressione lievemente differente tra WT e morfanti per il gene distal-less homeobox gene 2a (dlx2a) a 48 hpf e di neurogenic differentiation (neurod) a 24 hpf. Un'analisi di microarray two-color sul genoma totale di zebrafish è stata utilizzata per studiare l'espressione genica su embrioni di 8 e 48 hpf trattati con esr2aATGMO rispetto ai controlli iniettati con StdMO. Con l'analisi microarray a 8 hpf, si possono evidenziare le variazioni nell'espressione dovute principalmente al knockdown del recettore materno. L'analisi a 48 hpf permette invece di rilevare effetti del morfolino dovuti all'inattivazione anche dei trascritti embrionali. L'analisi pangenomica di microarray a 8 hpf, ha individuato 237 trascritti significativamente up-regolati e 219 down-regolati a causa dell'assenza del recettore Esr2a materno negli embrioni iniettati con esr2aATGMO. A 48 hpf, 165 e 124 trascritti, presumibilmente zigotici, sono rispettivamente up-e down-regolati. Tra questi solo 8 sono in comune con quelli up-regolati a 8 hpf e 17 con quelli down-regolati. E' interessante osservare la presenza di un'up-regolazione dei trascritti implicati nella regolazione negativa della proliferazione cellulare. Si può ipotizzare che l'assenza di Esr2a porti ad una diminuzione della proliferazione cellulare, forse dovuta ad un aumento dell'apoptosi. Il dato è in accordo con i risultati del saggio di morte cellulare, mediante TUNEL, che ha evidenziato un numero di cellule apoptotiche nei morfanti notevolmente aumentato e concentrato nell'area cerebrale a 24 e 48 hpf. L'analisi della vascolarizzazione embrionale sfruttando l'attività vasale della fosfatasi alcalina endogena e mediante l'utilizzo della linea transgenica TG(fli1:EGFP) a 3 e 6 dpf ha mostrato nei morfanti esr2aATGMO una netta diminuzione dei vasi subintestinali ed un pattern di distribuzione dei vasi lungo il tronco e la coda meno definito. I risultati ottenuti suggeriscono che nello sviluppo di zebrafish sia presente un controllo epigenetico dipendente dall'mRNA materno di Esr2a e da un'interazione con gli estrogeni di eredità materna

    Short-term inhibition of TERT induces telomere length-independent cell cycle arrest and apoptotic response in EBV-immortalized and transformed B cells

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    Besides its canonical role in stabilizing telomeres, telomerase reverse transcriptase (TERT) may promote tumorigenesis through extra-telomeric functions. The possible therapeutic effects of BIBR1532 (BIBR), a powerful TERT inhibitor, have been evaluated in different cellular backgrounds, but no data are currently available regarding Epstein-Barr virus (EBV)-driven B-cell malignancies. Our aim was to characterize the biological effects of TERT inhibition by BIBR on EBV-immortalized lymphoblastoid cell lines (LCLs) and fully transformed Burkitt's lymphoma (BL) cell lines. We found that BIBR selectively inhibits telomerase activity in TERT-positive 4134/Late and 4134/TERT+ LCLs and EBV-negative BL41 and EBV-positive BL41/B95.8 BL cell lines. TERT inhibition led to decreased cell proliferation, accumulation of cells in the S-phase and ultimately to increased apoptosis, compared with mock-treated control cells. All these effects occurred within 72 h and were not observed in BIBR-treated TERT-negative 4134/TERT- and U2OS cells. The cell cycle arrest and apoptosis, consequent upon short-term TERT inhibition, were associated with and likely dependent on the activation of the DNA damage response (DDR), highlighted by the increased levels of γH2AX and activation of ATM and ATR pathways. Analyses of the mean and range of telomere lengths and telomere dysfunction-induced foci indicated that DDR after short-term TERT inhibition was not related to telomere dysfunction, thus suggesting that TERT, besides stabilizing telomere, may protect DNA via telomere-independent mechanisms. Notably, TERT-positive LCLs treated with BIBR in combination with fludarabine or cyclophosphamide showed a significant increase in the number of apoptotic cells with respect to those treated with chemotherapeutic agents alone. In conclusion, TERT inhibition impairs cell cycle progression and enhances the pro-apoptotic effects of chemotherapeutic agents in TERT-positive cells. These results support new therapeutic applications of TERT inhibitors in EBV-driven B-cell malignancies

    Transcriptional control of human organic anion transporting polypeptide 2B1 gene

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    Organic anion transporting polypeptides (OATPs) are a group of transmembrane carriers with a wide spectrum of amphipathic substrates. In particular, OATP2B1 (previously called OATP-B) can transport steroid hormone conjugates and is expressed in organs with steroidogenic activity, such as placenta, brain and skin. In this work, we have analyzed the transcription of the OATP2B1 gene (SLCO2B1) in 14 different human tissues by means of 5'-RACE analysis. Five promoters (only two of which were present in GenBank), associated with distinct first exons, were found to drive OATP2B1 expression, giving rise to transcripts with unique 5'-untranslated termini. Exon 1b is widely expressed and was found here in 10 tissues. It is partially coding, while the other four different first exons are untranslated. All exons are spliced to a common exon 2 that contains a putative ATG in frame with the following coding region. Sequence analysis of the 5'-flanking region of each first exon revealed a lack of TATA box, thus accounting for the use of multiple transcriptional start sites in nearly all first exons

    Telomere and Telomerase in Carcinogenesis: Their Role as Prognostic Biomarkers

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    Unlimited replicative potential is the hallmark of cancer cells. Telomere shortening, which occurs at each cell division, restricts cell proliferation in normal somatic cells. Maintenance of telomere length, required for the unlimited cell proliferation displayed by cancer cells, is provided by telomerase activity, expressed in the vast majority of tumors. Telomere/telomerase interplay has a critical role in tumor initiation and progression. Many tumor-based studies have demonstrated that neoplastic cells generally have shorter telomeres than their adjacent non-cancerous mucosa, strongly supporting the concept that telomere erosion is a critical event in carcinogenesis. Telomerase reverse transcriptase (TERT), the catalytic component of the telomerase complex, is usually absent in normal somatic cells but is expressed at variable levels in tumors. Specific mutations in its promoter may influence TERT levels. A body of data indicates that telomere length and levels of TERT/telomerase activity may be prognostic markers in cancers. Circulating cell-free TERT RNA may also be a promising marker for minimally invasive moni- toring of disease progression and response to therap

    Going Beyond Counting First Authors in Author Co-citation Analysis

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    The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed

    Variations on the Author

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    “Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship

    Appropriate Similarity Measures for Author Cocitation Analysis

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    We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis

    The knockdown of maternal glucocorticoid receptor mRNA alters embryo development in zebrafish

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    In zebrafish, ovulated oocytes contain both maternal cortisol and the mRNA for the glucocorticoid receptor (gr), which is spread as granular structures throughout the ooplasm. At 0.2 hpf, this transcript is relocated in the blastodisc area and partitioned among blastomeres. At 6-8 hpf, it is replaced by zygotic transcript. We used morpholinos to block translation of both maternal and zygotic gr transcripts, and a missplicing morpholino to block post-transcriptionally the zygotic transcript alone. Only knockdown of translation produced an increase of apoptosis and subsequent craniofacial and caudal deformities with severe malformations of neural, vascular, and visceral organs in embryos and 5-dpf larvae. Such defects were rescued with trout gr2 mRNA. Microarray analysis revealed that 114 and 37 highly expressed transcripts were up- and down-regulated, respectively, by maternal Gr protein deficiency in 5-hpf embryos. These results indicate that the maternal gr transcript and protein participate in the maternal programming of zebrafish development

    Dispelling the Myths Behind First-author Citation Counts

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    We conducted a full-scale evaluative citation analysis study of scholars in the XML research field to explore just how different from each other author rankings resulting from different citation counting methods actually are, and to demonstrate the capability of emerging data and tools on the Web in supporting more realistic citation counting methods. Our results contest some common arguments for the continued use of first-author citation counts in the evaluation of scholars, such as high correlations between author rankings by first-author citation counts and other citation counting methods, and high costs of using more realistic citation counting methods that are not well-supported by the ISI databases. It is argued that increasingly available digital full text research papers make it possible for citation analysis studies to go beyond what the ISI databases have directly supported and to employ more sophisticated methods
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