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    Going Beyond Counting First Authors in Author Co-citation Analysis

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    The present study examines one of the fundamental aspects of author co-citation analysis (ACA) - the way co-citation counts are defined. Co-citation counting provides the data on which all subsequent statistical analyses and mappings are based, and we compare ACA results based on two different types of co-citation counting - the traditional type that only counts the first one among a cited work's authors on the one hand and a non-traditional type that takes into account the first 5 authors of a cited work on the other hand. Results indicate that the picture produced through this non-traditional author co-citation counting contains more coherent author groups and is therefore considerably clearer. However, this picture represents fewer specialties in the research field being studied than that produced through the traditional first-author co-citation counting when the same number of top-ranked authors is selected and analyzed. Reasons for these effects are discussed

    Variations on the Author

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    “Variations on the Author” discusses two of Eduardo Coutinho’s recent films (Um Dia na Vida, from 2010, and Últimas Conversas, posthumously released in 2015) and their contribution to the general question of documentary authorship. The director’s filmography is characterized by a consistent yet self-effacing form of authorial self-inscription: Coutinho often features as an interviewer that rather than express opinions propels discourses; an interviewer that is good at listening. This mode of self-inscription characterizes him as an author who is not expressive but who is nonetheless markedly present on the screen. In Um Dia na Vida, however, Coutinho is completely absent form the image, while Últimas Conversas, on the contrary, includes a confessional prologue that moves the director from the margins to the center of his films. This article examines the ways in which these works stand out in the filmography of a director who offers new insights into the notion of cinematic authorship

    Appropriate Similarity Measures for Author Cocitation Analysis

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    We provide a number of new insights into the methodological discussion about author cocitation analysis. We first argue that the use of the Pearson correlation for measuring the similarity between authors’ cocitation profiles is not very satisfactory. We then discuss what kind of similarity measures may be used as an alternative to the Pearson correlation. We consider three similarity measures in particular. One is the well-known cosine. The other two similarity measures have not been used before in the bibliometric literature. Finally, we show by means of an example that our findings have a high practical relevance.information science;Pearson correlation;cosine;similarity measure;author cocitation analysis

    Through the looking glass: Phoresy as seen in the light of mutualism

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    Phoresy is the dispersal of small organisms on larger ones to move out of an unfavourable habitat. Although these interactions are transient, they can form tight links with mutualistic interactions if the phoretic organisms are dependent on both mutualistic partners, one serving as a vehicle with the other providing a substratum for development. These linked tripartite interactions may further lead to increase in host specificity in phoretic organisms. Therefore, to understand the effects of phoretic interactions on the entire mutualistic system and factors that can help the phoretic organisms to gain host-specificity, I investigated the phoretic nematode community associated with the fig–fig wasp brood-site pollination mutualism. I chose Ficus racemosa, a wide-spread and a common tropical keystone fig species, which shows a mutualistic relationship with a unique pollinating fig wasp species and harbours a host-specific phoretic nematode community. Ficus racemosa has an Indo-Australian distribution and is known to be associated with several nematode species throughout its range. A few nematode species have also been reported from India, but they lacked comprehensive detail on their morphology and also molecular characterization, thus making it difficult to carry out further species-specific studies. Therefore, we firstly characterised the phoretic nematode community associated with the Ficus racemosa system in south India, using both morphological and molecular approaches and found a mixture of plant-parasitic, animal-parasitic and possibly omnivorous taxa. We found that the nematode community consisted of three new nematode species out of which one species showed phenotypic plasticity. The phylogenetic analysis based upon near-full-length small subunit (SSU) and D2–D3 expansion segments of large subunit (LSU) rRNA genes showed that the species have close affinities with sister nematode species reported from Ficus racemosa from other geographical locations outside India. To determine the effects of phoretic nematodes on the entire mutualism, we performed various bioassays and determined the fitness effects of phoretic organisms on both mutualistic partners, i.e., figs and pollinator fig wasps. We found that not only did the nematodes negatively affect the survival, flight ability, offspring number and predation risk faced by their fig wasp vehicles, but they also negatively impacted fruit seed number and size in a density-dependent manner. Furthermore, wasps arriving at their destinations carried lower phoretic nematode load compared to dispersing wasps suggesting that there is selection on hitchhiker numbers within a vehicle during the dispersal process. Using choice experiments with single nematodes and employing conspecific as well as heterospecific co-travellers, we showed that these phoretic organisms were able to distinguish between vehicles with different hitchhiker density and physiological states. Plant-parasitic nematodes preferred vehicles devoid of conspecifics and likely hitchhiked in pairs, while animal-parasitic nematodes preferred vehicles with conspecifics within a certain density range. Both types of nematodes were insensitive to the presence of heterospecific co-travellers. The nematodes used volatiles and carbon dioxide for this intra-specific vehicular discrimination. We also characterized the volatiles emitted by the pollinator wasps and identified the possible set of compounds that might elicit an attraction response in the nematodes towards their vehicles. Overall, we show that phoretic nematodes have a density-dependent negative effect on the mutualism between figs and their pollinating fig wasps and that they use parameters such as vehicle physiology and existing traveller load within the vehicle to select a vehicle for their dispersal

    Ants, Figs, Fig Wasps : The Chemical Ecology Of A Multitrophic System

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    Plant–animal interaction systems are complex food webs where the members—plants, pollinators, herbivores, parasites and predators of the pollinators/herbivores—interact with each other in ways which maximize their own fitness. Based on the net outcome, such interactions could be mutually beneficial to the interacting members (mutualism) or beneficial to only one of the interacting members at the cost of the other interacting members (herbivory, predation, parasitism). It is possible that such outcomes are actually a continuum and could swing in either direction from beneficial to detrimental and vice versa. Such transitions happen not only over long time scales, but could also happen within shorter time scales based on conditionalities. Conditional outcomes are those in which the outcome of an interaction between two partners is conditional on the involvement of a third partner. Thus, studying such outcomes necessitates taking into account systems beyond the classical two-partner interactions. In such complex multitrophic plant–animal interaction systems in which there are direct and indirect interactions between species, comprehending the dynamics of these multiple partners is very important for an understanding of how the system is structured. In Chapter 2 we investigate Ficus racemosa and its community of obligatory mutualistic and parasitic fig wasps that develop within the fig inflorescence or syconium, as well as their interaction with opportunistic ants. We focus on temporal resource partitioning among members of the fig wasp community over the development cycle of the fig syconia during which wasp oviposition and development occur and we study the activity rhythm of the ants associated with this community. We found that the members of the wasp community partitioned their oviposition across fig syconium development phenology and showed interspecific variation in activity across the diel cycle. The wasps presented a distinct sequence in their arrival at fig syconia for oviposition. We documented night oviposition in several fig wasp species for the first time. Ant activity on the fig syconia was correlated with wasp activity and was dependent on whether the ants were predatory or trophobiont-tending species; only numbers of predatory ants increased during peak arrivals of the wasps. In Chapter 3, we found that predatory ants (Oecophylla smaragdina) patrolling F. racemosa trees were attracted to the odour from fig syconia at different developmental phases, as well as to the odours of fig wasps, whereas other predatory ants (Technomyrmex albipes) responded only to odours of syconia from which fig wasps were dispersing and to fig wasp odour. However, trophobiont-tending ants (Myrmicaria brunnea) patrolling the same trees and exposed to the same volatiles were unresponsive to fig or fig wasp odours. The predatory ants demonstrated a concentration-dependent response towards volatiles from figs receptive to pollinators and those from which wasps were dispersing while the trophobiont-tending ants were unresponsive to such odours at all concentrations. Naıve predatory ants failed to respond to the volatiles to which the experienced predatory ants responded, indicating that the response to fig-related odours is learned. In Chapter 4 we characterise the dynamics of the volatile bouquet of the fig syconium from the initiation through pre-receptive, receptive, and late inter-floral stages which act as signals/ cues for different fig wasp species. We were also interested in diel patterns of volatile emission as some fig wasp species were strictly diurnal (the pollinator, Ceratosolen fusciceps) whereas other fig wasps such as Apocryptophagus fusca were observed ovipositing even during the nocturnal hours. We identified volatiles that were specific to syconium development phase as well as to the time of day in this bouquet. α-muurolene was identified as the sesquiterpene specific to receptive-phase as well as being present only during the day thus coinciding with the diurnal pollinator arrival pattern. Volatiles such as (E)-β-ocimene were present in increasing levels across the developmental stages of the fig and thus could act as background volatiles providing suitable information to fig wasps about host plants and their phases. Chapter 5 examines the responses of predatory and trophobiont-tending ant species to the cuticular hydrocarbon (CHC) extracts of four galler and two parasitoid fig wasp species associated with F. racemosa. Interestingly, the antennation response of both experienced and na¨ıve ants to these wasp extracts was identical indicating that prior exposure to such compounds is not necessary for eliciting such response. We also characterised these cuticular hydrocarbon extracts to find potential compounds which could as short-range cues for predatory ants. Ants were more responsive to the cuticular extracts of parasitoids rather than to those of galler wasps, implying that the CHC profile of carnivorous prey may contain more elicitors of aggressive behaviour in ants compared to herbivorous prey whose profiles may be more similar to those of their plant resources. We also find congruency between the cuticular profiles of parasitoids and their hosts suggesting that parasitoids could sequester compounds from their diet. Important findings and conclusions of the thesis are presented in Chapter 6. The first two parts of the appendices section discuss work carried out on alternative ways of analysing multivariate data sets such as plant volatiles and insect cuticular hydrocarbons. Appendix A details the use of Random Forests, an algorithm-based method of analysing complex data sets where there are more variables than samples, a situation akin to microarray data sets. This work illustrates the use of such techniques in chemical ecology, highlighting the potential pitfalls of classical multivariate tests and the advantages of newer more robust methods. Appendix B, an invited article following the publication of the earlier work, compares different data transformation procedures currently employed in such multivariate analysis. Appendix C details sex-specific differences in cuticular hydrocarbons of fig wasps, using the pollinator C. fusciceps as a case study

    Host Location in Non-pollinating Fig Wasps of Ficus Racemosa : Age, Oviposition History and the Ovipositor

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    The fig–fig wasp system is a brood site pollination system where pollinators breed inside an enclosed globular inflorescence (syconium) that they pollinate. This pollination mutualism is subjected to exploitation by the externally ovipositing non-pollinating fig wasps (NPFWs) that do not provide any pollination services but use the syconium flowers for the development of their offspring. Fig host location and oviposition by the mutualistic partner, i.e. the pollinating wasp, has been addressed adequately by fig researchers; however, host location by the exploiters has not been investigated. The main objective of this research work is to understand host location and host acceptance by externally ovipositing NPFWs in the cluster fig Ficus racemosa. The oviposition sites for these wasps, which are empty florets for gallers and galler larvae for parasitoids, are hidden within the fig syconium. With a community of six different species of NPFWs varying in their life history traits such as lifespan and ovigeny index and arriving at different times during syconium ontogeny to exploit the same resource for brood development, the syconium is converted into a microcosm. The syconium is a chemically diverse and crowded chamber that is dynamic in its occupancy over time and is accessed for egg-laying with the help of the probing ovipositor of the NPFWs that drill through the syconium wall from the exterior. Also, since fig wasp larvae are immobile and themselves do not have host-seeking behaviour, it is crucial for these parasitic wasps to accurately find the best oviposition sites for their offspring. We began our investigations with deciphering the trophic interactions within this multitrophic community, by investigating galler host–parasitoid pairings through manipulative experiments, and tracking the developmental trajectories of all NPFWs. The reproductive strategies of parasitoids provided exceptions to the conventional koinobiont–idiobiont dichotomy. The parasitoid Apocrypta sp 2 is a phytoentomophagous, ectoparasitic unconventional koinobiont and a relative generalist parasitising all three non-pollinating gallers Sycophaga stratheni, Sycophaga testacea and Sycophaga fusca in their larval stages while Apocrypta westwoodi is an endoparasitic idiobiont and a specialist parasitoid parasitizing the pre-pupal stage of the early-arriving gallers S. stratheni and S. testacea. We succeeded in developing a novel lab set-up for raising fig wasps in lab from the pre-pupal stage onwards and observed that early-arriving gallers accelerate through their vulnerable stages probably to avoid predation by A. westwoodi. The possibility of a cryptic species within the population of Apocrypta sp 2 was suggested based on the large variation in its development time when arriving for oviposition at two different time periods during syconium development. We then explored different factors that may affect the oviposition behaviour of these parasitic wasps as well as cues that may be utilised to gain information about potential oviposition resources. We demonstrated that the non-pollinating galler S. fusca distinguishes between syconia with varying oviposition history, prefers to oviposit into syconia into which conspecifics have oviposited, and that heterospecifics, in addition to conspecifics, can also affect oviposition choice in a system where multiple species use the same resource. We also observed that this oviposition preference is exhibited at the level of the syconium but does not extend to regions within a syconium that were exploited for oviposition. However, the preference for syconia into which conspecifics have oviposited may be lost when offered a syconium that has been over-exploited with regard to oviposition indicating a syconium oviposition threshold; this is possibly to avoid competition with conspecifics for egg-laying sites within the syconium microcosm. We also demonstrated that syconia with different oviposition histories differed in their volatile profiles, and the ones exposed to conspecifics had a characteristic chemical signature left by the footprints of ovipositing wasps. These chemical cues may reveal the identity of visitors to the syconium and thus indicate the suitability of the syconium as a resource patch for oviposition. Since the NPFWs oviposit from outside the syconium, the ovipositor is the only organ that comes in physical contact with hosts hidden inside the syconium. The ovipositor is therefore the major sensory organ involved in host location. We investigated the sensory nature of the ovipositor in NPFWs especially its olfactory nature. We recorded the electrophysiological response of the ovipositor to relevant stimuli using a modified electroantennogram (EAG) set-up. We call this novel set-up an ElectroOvipositogram (EOG).We amplified the signal-to-noise ratio of electrophysiological recordings from the fig wasp ovipositor by mounting the ovipositor such that its sensilla-rich tip was free to perceive volatiles. The ovipositor of the galler S. fusca showed an electrophysiological response to volatiles from pollen receptive-phase syconia to which that of the parasitoid A. westwoodi did not respond since this parasitoid does not seek galler host larvae at this phenological stage. The parasitoid's ovipositor, however, showed electrophysiological and behavioral responses to CO2 in gaseous form possibly to seek out actively respiring galler larvae within their galls.We provide additional evidence for the porous nature of ovipositor sensilla in NPFWs by using techniques such as scanning electron microscopy, silver nitrate staining, and X-ray tomography. The ovipositor in gallers and parasitoids appeared to show adaptive responses to appropriate host and syconium stage volatiles. Finally, we investigated the effect of stressful conditions such as ageing and host deprivation on host acceptance in NPFWs. The pro-ovigenic short-lived galler S. fusca showed a decrease in oviposition host specificity with age when host-deprived and, therefore, retaining a full egg load. This decrease in specificity takes place after the third day of adult life. However, specificity similar to that of freshly eclosed naive wasps is maintained if aged wasps are allowed to oviposit, suggesting that egg load interacts with biological age to affect oviposition behaviour. The oviposition host- and syconium stage-specificity of synovigenic and longer-lived parasitoids remained unchanged with age within the experimental limit of this work suggesting that oviposition in the wrong host may result in zero reproductive fitness and that there is a premium on high specificity at all ages. Interestingly, another pro-ovigenic and short-lived galler S. testacea did not accept the non-host stage syconia that were offered for oviposition despite being time-limited as a result of being aged. This suggested the possibility of a morphological limitation, i.e. the length of ovipositor was too short to reach oviposition sites, and therefore precluded the demonstration of behavioral plasticity in this species. We, therefore, demonstrate how stressful conditions such as ageing or oviposition deprivation may differently affect species that vary in life history traits. This thesis has addressed several challenging questions. We investigated the trophic interactions of an entire fig wasp community, and we also succeeded in raising fig wasps outside the syconium for the first time. Oviposition behavior in parasitic fig wasps was investigated at the level of individual wasps with a parallel focus on changes induced by physiological stressors such as ageing. We were also successful in demonstrating the olfactory nature of the fig wasp ovipositor especially its response to carbon dioxide in gaseous form and have highlighted the role of the ovipositor in exploiting hidden oviposition resources. The results of this thesis contribute to furthering of our present understanding of the existence of exploiters in the 75+ million year old co-evolved nursery pollination mutualism of the figs and their pollinator wasps. This thesis has also opened up many fruitful areas for novel research

    From Songlines to genomes: prehistoric assisted migration of a rain forest tree by Australian Aboriginal people

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    Prehistoric human activities have contributed to the dispersal of many culturally important plants. The study of these traditional interactions can alter the way we perceive the natural distribution and dynamics of species and communities. Comprehensive research on native crops combining evolutionary and anthropological data is revealing how ancient human populations influenced their distribution. Although traditional diets also included a suite of non-cultivated plants that in some cases necessitated the development of culturally important technical advances such as the treatment of toxic seed, empirical evidence for their deliberate dispersal by prehistoric peoples remains limited. Here we integrate historic and biocultural research involving Aboriginal people, with chloroplast and nuclear genomic data to demonstrate Aboriginal-mediated dispersal of a non-cultivated rainforest tree.We assembled new anthropological evidence of use and deliberate dispersal of Castanospermum australe (Fabaceae), a non-cultivated culturally important riparian tree that produces toxic but highly nutritious water-dispersed seed. We validated cultural evidence of recent human-mediated dispersal by revealing genomic homogeneity across extensively dissected habitat, multiple catchments and uneven topography in the southern range of this species. We excluded the potential contribution of other dispersal mechanisms based on the absence of suitable vectors and current distributional patterns at higher elevations and away from water courses, and by analyzing a comparative sample from northern Australia.Innovative studies integrating evolutionary and anthropological data will continue to reveal the unexpected impact that prehistoric people have had on current vegetation patterns. A better understanding of how traditional practices shaped species' distribution and assembly will directly inform cultural heritage management strategies, challenge "natural" species distribution assumptions, and provide innovative baseline data for pro-active biodiversity management

    Spiders of India

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    Ecology of Fungus-Farming by Termites : Fungal Population Genetics and Defensive Mechanism of Termites against the Parasitic Fungus Pseudoxylaria

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    All living organisms require food for growth and survival. Heterotrophs depend on autotrophs such as green plants which can synthesize their own food unlike heterotrophic animals. Among heterotrophs, only humans and some insects have the remarkable ability to cultivate crops for food. While humans cultivate plants, three insect lineages—ants, termites, and beetles—cultivate fungi inside their nests in obligate mutualistic exo-symbioses. Interestingly, just like human agriculture, insect fungus farms are also threatened by weeds and pests, e.g. the farms of fungus-growing termites which cultivate Termitomyces fungi can be overgrown by weeds such as the parasitic fungus Pseudoxylaria. Studies on ant and beetle fungus-farming systems have uncovered the important role of chemicals and behaviour in helping these insects to protect their crops from parasitic fungi. On the other hand, studies on the termite system till now, have only revealed the presence of antifungal compounds and actinobacteria which are largely non-specific and inhibitory to the mutualistic crop fungi. Antifungal behavioural mechanisms, if present, are yet to be discovered. Therefore, this thesis focuses on different anti-Pseudoxylaria mechanisms employed by fungus-growing termites, viz. role of nest abiotic factors, mechanism of fungal recognition by termite hosts, behavioural response of termite to Pseudoxylaria presence and coupling of this behaviour to anti-Pseudoxylaria activity. The present thesis has been divided into six chapters. CHAPTER 1 gives a brief literature review on fungus-farming insects and the different mechanisms which insects employ in order to keep their fungal farms safe from growth of parasitic fungi with specific reference to fungus-growing termites. The obligate mutualistic interaction between termites and the Termitomyces fungus is 19–49 My-old and is, therefore, a very ancient agriculture system. The mutualistic fungus is cultivated on partially digested plant matter called fungus comb inside the nest and harvested by termites for nutrition. At the same time, the weedy fungal parasite Pseudoxylaria can compete with the mutualistic fungus for nutrition leading to negative effects on the fungal farms. Termite hosts are believed to use abiotic factors, antibiotics and hygienic behaviours to keep their fungal gardens free from parasitic fungi such as Pseudoxylaria. However, the actual mechanisms used by termites against parasitic fungi are unclear. Unravelling the proximate mechanisms used in fungal cultivar protection is central to understanding the evolutionary stability of these farming mutualisms. CHAPTER 2 examines the diversity and population genetic structure of Termitomyces and Pseudoxylaria strains associated with the fungus-growing termite Odontotermes obesus. Genetic diversity of cultivar and parasite could have important implications for the stability of the mutualistic interaction, e.g. genetic clonality arising from monoculture is generally thought to make populations more prone to infection by parasites. Using molecular phylogenetic tools, within-nest genetic homogeneity was found in Termitomyces species but not in Pseudoxylaria species. Lower OTU but higher genotypic diversity (within the most abundant OTU) was found in the genus Termitomyces compared to Pseudoxylaria. Additionally, population genetics methods suggested a sexual population structure for Termitomyces and clonal propagation for Pseudoxylaria species. This is the first study to investigate the population genetics of the symbiotic fungi associated with the termite genus Odontotermes or any other termite species from India. In CHAPTER 3, the effect of nest micro-environment alone on the growth of the parasitic fungus Pseudoxylaria was examined. For this, seasonal changes in nest xiii temperature and CO2 were recorded and in situ and ex situ growth experiments were performed on Pseudoxylaria. The monthly pattern of mound temperatures was found to be similar to the outside—cycling from highs in summer to lows in winter—but characterised by dampened variation compared to high daily fluctuations outside. Moreover, the mound CO2 levels were found to be orders of magnitude above atmospheric levels and, unlike the outside, were characterised by daily and monthly fluctuations. With in situ experiments during summer and winter, the effect of these dissimilar conditions—inside and outside mounds—was examined on Pseudoxylaria growth. The growth of the parasite was found to be greater inside than outside the mound. Following this, the growth of different parasite isolates under controlled ex situ conditions was examined—spanning the variation in environmental conditions that mounds exhibit daily and seasonally. High CO2 levels decreased parasitic fungal growth in general but temperature had an isolate-dependent effect. Taken together, these results suggested that the parasite is adapted to survive in the mound. However, mound environmental conditions still seemed to exert a negative effect on parasite growth, even if they cannot inhibit Pseudoxylaria completely. These results shed light on the possible new role of termite-engineered structures in impacting parasitic fungus ecology, independent of any direct role of termites in suppressing parasite growth. This is the first study to investigate the effect of abiotic factors on Pseudoxylaria growth. In CHAPTER 4, whether termites can differentiate between Termitomyces and Pseudoxylaria was investigated. In a novel, laboratory-based choice assay, termites displayed a differential response towards the two fungi by burying the Pseudoxylaria with agar. Also, termites were found to be able to differentiate between the fungi using olfactory cues, i.e. smell, alone, for this task. The mutualistic and parasitic fungi were found to emit unique volatile bouquets which could help termites to distinguish between them. This is important because, whether termites use antifungal compounds or hygienic behaviours, it is crucial that they are able to differentiate between the parasitic and mutualistic fungi so that they can selectively use antifungal mechanisms—whether chemical or behavioural—against Pseudoxylaria. This is of special significance because, many actinobacteria and anti-Pseudoxylaria compounds isolated from this system till now, lack specificity and inhibit the mutualistic Termitomyces as well. Also, fungal grooming and weeding behaviours as displayed by fungus-growing ants have not yet been reported in termites. This is the first study to show that termites have the behavioural capacity to differentiate between the mutualistic and parasitic fungi in an ecologically relevant setting. In CHAPTER 5, whether the burying of Pseudoxylaria could affect its growth was investigated. It was found that termites can utilise agar, glass beads and soil for deposition over the offered fungal plugs but the use of agar and glass beads did not inhibit Pseudoxylaria growth effectively. On the other hand, soil deposition was found to decrease growth of both Pseudoxylaria and Termitomyces fungi post-burial. However, Pseudoxylaria was found to be affected more strongly than Termitomyces. Further, hypoxia acting alone seemed to decrease only Pseudoxylaria survival without any apparent effect on Termitomyces. Therefore, hypoxia induced by soil deposition may be the reason behind the decrease in Pseudoxylaria survival. However, presence of antifungal compounds can not be ruled out and they may be selectively applied in larger quantities on Pseudoxylaria with soil deposition. This study demonstrates an anti-Pseudoxylaria activity of this insect behaviour, unique to termites among fungus-farming insects, to the presence of the parasitic fungus. CHAPTER 6 concludes the findings of this thesis and suggests a working model for the mechanism of growth suppression of Pseudoxylaria inside a termite nest. In particular, focus is on the important role of abiotic factors when combined with termite behaviour in the apparent absence of Pseudoxylaria from termite nests. These results not only shed new light on how the ecology of these fungi is affected by their termite host but also reveal the mechanistic bases that may contribute fundamentally to the evolutionary stability of this ancient mutualism
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