6,548 research outputs found
Can genomics boost productivity of orphan crops?
No full textRajeev K Varshney, Jean-Marcel Ribaut, Edward S Buckler, Roberto Tuberosa, J Antoni Rafalski & Peter Langridg
Paratachardina mithila Varshney
No full text<i>Paratachardina mithila</i> Varshney <p> <i>Paratachardina mithila</i> Varshney, 1968: 489; 1977: 58.</p> <p> <i>Paratachardina mithilae</i> Varshney, 1997: 30. Incorrect subsequent spelling [see 'Notes'].</p> <p> <b>Type data. Holotype,</b> adult female. <b>INDIA: Assam,</b> Shillong, in the gardens of Ward Lake, coll. R. K. Varshney, i.1967, on <i>Photinia notoniana</i> var. <i>macrophylla</i>. <b>Paratypes:</b> same data as holotype except some specimens coll. vi.1967 or viii.1970 (NZSI). [Types not seen; see 'Notes'.]</p> <p>Adult female</p> <p> The following descriptions of unmounted and mounted material are adapted from Varshney (1977). <b>Unmounted material.</b> Lac test of adult female almost round, brownish black, with three small openings on top for brachial and anal orifices; with 16 conspicuous longitudinal ridges that divide the test into sectors; a circular spot on the middle of each ridge, probably corresponding to marginal duct cluster openings.</p> <p> <b>Mounted material.</b> Body trilobed, 2.5–3.0 mm long, 2.8–3.0 mm wide. Brachia short, 103 µm long. Each brachial plate oval, distal half slightly larger, each 68–120 µm long, 51–70 µm wide; pseudospines totalling 44–50, occupying about two-thirds area of brachial plate center, with gaps on upper large portion. Anterior spiracles each 137 µm long, 86 µm wide, situated far away from brachial plates, spiracular pores with 5- loculi. Dorsal spine small, conical, 68–70 µm long, with a hollow, not pointed tip; membranous pedicel of dorsal spine well developed, 70–103 um long and 70–103 µm wide. Anal tubercle well developed, 86–170 µm long, 120–140 µm wide; supra-anal plate subequal or slightly longer than its maximum width. Anal ring not divided in sectors; supra-anal plate forming a cup-shaped cavity. Anal fringe of few acute lobes, with narrow and deep clefts. Anal ring setae just reach, or slightly protrude past anal fringe. Antennae minute and obscure. Marginal duct clusters in 8 pairs, each roughly round, poorly demarcated, with ducts arranged irregularly. Ventral duct clusters present.</p> <p> <b>Notes.</b> Subsequent to his original description, Varshney (1997) listed the species name as " mithilae " rather than " mithila ", without giving an explanation for his action. Varshney's (1968, 1977) descriptions do not specify the etymology of the name " mithila ", and do not indicate whether it should be regarded as a noun or an adjective. According to the Article 31.2.2 of the <i>International Code of Zoological Nomenclature</i> (ICZN 1999), the name “ mithila ” becomes a noun in apposition and should be retained as " mithila ". Even though Varshney (personal communication) emended " mithila " to " mithilae " because the species was named after a woman, articles 31, 32 and 33 of the ICZN (1999) make it clear that such an alteration to the species name is an incorrect subsequent spelling, as recognised by Ben-Dov (2006).</p> <p> According to Varshney (1977), this species is similar to <i>P. t h e a e</i>, from which it can be separated due to its larger adult female size, anal tubercle subequal in length and width, and pedicel of the dorsal spine not much longer than the length of the spine itself. Type material of <i>P. mithila</i> was not available in the present study, as we did not receive a reply to our request for a loan from the NZSI, and no type material or non-type topotypic specimens could be located in any other museum. Varshney (1977) gave a key to separate <i>P. mithila</i> and <i>P.</i></p> <p> <i>theae</i> as follows (Varshney 1977: 56, key couplet number 4):</p> <p> – Anal tubercle slightly longer than its maximum width; pedicel of dorsal spine as long as spine itself.................................................................................................................................................................... <i>mithila</i> – Anal tubercle distinctly broader than its maximum length; pedicel of dorsal spine much longer than the spine <i>....................................................................................................................................................... theae</i></p> <p> However, Varshney’s (1977) description of <i>P. mithila</i> overlaps with his description of <i>P. t h e a e</i> in the character states used to separate them in the key. The minimum length and width of the anal tubercle of <i>P. mithila</i> given by Varshney’s (1977) description is 86 µm and 120 µm, respectively, in which case, there must be specimens for which the anal tubercle is distinctly broader than its maximum length. On the other hand, the anal tubercle in the syntypes of <i>P. t h e a e</i> herein studied are approximately as long as wide, with some specimens being slightly longer than wide, and others being slightly wider than long. Furthermore, the length of the pedicel of the dorsal spine also varies in <i>P. t h e a e</i> and sometimes is about the same length as the spine. Specimens from China collected on the same host genus as <i>P. m i t h i l a</i>, i.e., on <i>Photinia benthamiana</i>, were available for study (see 'Other material studied' under <i>P. t h e a e</i>), but these could not be separated morphologically from <i>P. t h e a e</i>. Thus adult females of <i>P. mithilae</i> and <i>P. t h e a e</i> appear similar in all features considered and the two species cannot be separated with the available information (see also 'Diagnosis' of <i>P. ternata</i>).</p>Published as part of <i>Kondo, Takumasa & Gullan, Penny J., 2007, Taxonomic review of the lac insect genus Paratachardina Balachowsky (Hemiptera: Coccoidea: Kerriidae), with a revised key to genera of Kerriidae and description of two new species, pp. 1-41 in Zootaxa 1617</i> on pages 17-18, DOI: <a href="http://zenodo.org/record/179122">10.5281/zenodo.179122</a>
Sequencing the Chickpea Genome
No full textThe importance of chickpea and constraints in chickpea production urged the need of chickpea genome. Varshney and colleagues in 2013 reported the draft genome of chickpea (kabuli). The genome assembly was 532.29 Mb spanning across 7,163 scaffolds and consisted of 28,269 gene models. The estimated size of chickpea genome was 738.09 Mb based on k-mer analysis. The draft genome assembly covered 73.8% of the total estimated genome size for chickpea. Gene annotation was carried for predicted gene models, though the UTRs and promoters have not been yet been predicted. Genome duplication and synteny analysis with other closely related legume crops showed gene conservation and segmental duplications spread across the draft genome assembly. The genome assembly provides resource for targeting genes responsible for disease resistance which are of agronomic importance. The genome assembly has been used for genome-assisted breeding and is further utilized to study the diversity and domestication of chickpea
Organization of retrotransposons and microsatellites in cereal genomes
No full textvokKJB. Yksikön huom.: KJ
Root Genomics
No full textWith the predicted increase of the human population and the subsequent need for larger food supplies, root health in crop plants could play a major role in providing sustainable highly productive crops that can cope with global climate changes. While the essentiality of roots and their relation to plant performance is broadly recognized, less is known about the role of roots in plant growth and development. “Root Genomics” examines how various new genomic technologies are rapidly being applied to the study of roots, including high-throughput sequencing and genotyping, TILLING, transcription factor analysis, comparative genomics, gene discovery and transcriptional profiling, post-transcriptional events regulating microRNAs, proteome profiling and the use of molecular markers such as SSRs, DArTs, and SNPs for QTL analyses and the identification of superior genes/alleles. The book also covers topics such as the molecular breeding of crops in problematic soils and the responses of root systems to a variety of stresses
Using Directional Transmissions and Receptions to Reduce Contention in Wireless Sensor Networks
No full textElectronically Switched Directional (ESD) antennas allow software-based control of the direction of maximum antenna gain. ESD antennas are feasible for wireless sensor network. Existing studies with these antennas focus only on controllable directional transmissions. These studies demonstrate reduced contention and increased range of communication with no energy penalty. Unlike existing literature, in this paper we experimentally explore controllable antenna directionality at both sender and receiver. One key outcome of our experiments is that directional transmissions and receptions together considerably reduce channel contention. As a result, we can significantly reduce intra-path interference
Introduction to root genomics
No full textThe advances of plant breeding have made possible large increases in the population of humankind. Although of paramount importance until today, novel approaches need to be taken in order to achieve higher yields without putting more strain on environmentally protected areas. One important organ that has been neglected by the majority of breeders and plant scientists is the root system. This book, therefore, has been planned to provide the state-of-the-art of research on roots including the potential and applications of root research in crop improvement program. Through a collection of leading scientists in the area of root research including biochemistry, molecular biology, physiology, and plant breeding, this book provides horizons for this field of researc
Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
No full textThis study presents the development and mapping of simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers in chickpea. The mapping population is based on an inter-specific cross between domesticated and non-domesticated genotypes of chickpea (Cicer arietinum ICC 4958 × C. reticulatum PI 489777). This same population has been the focus of previous studies, permitting integration of new and legacy genetic markers into a single genetic map. We report a set of 311 novel SSR markers (designated ICCM—ICRISAT chickpea microsatellite), obtained from an SSR-enriched genomic library of ICC 4958. Screening of these SSR markers on a diverse panel of 48 chickpea accessions provided 147 polymorphic markers with 2–21 alleles and polymorphic information content value 0.04–0.92. Fifty-two of these markers were polymorphic between parental genotypes of the inter-specific population. We also analyzed 233 previously published (H-series) SSR markers that provided another set of 52 polymorphic markers. An additional 71 gene-based SNP markers were developed from transcript sequences that are highly conserved between chickpea and its near relative Medicago truncatula. By using these three approaches, 175 new marker loci along with 407 previously reported marker loci were integrated to yield an improved genetic map of chickpea. The integrated map contains 521 loci organized into eight linkage groups that span 2,602 cM, with an average inter-marker distance of 4.99 cM. Gene-based markers provide anchor points for comparing the genomes of Medicago and chickpea, and reveal extended synteny between these two species. The combined set of genetic markers and their integration into an improved genetic map should facilitate chickpea genetics and breeding, as well as translational studies between chickpea and Medicago
A. Varshney, ethnic conflict & civic life. hindus and muslims in india
No full textÉtienne Gilbert. A. Varshney, ethnic conflict & civic life. hindus and muslims in india. In: Tiers-Monde, tome 44, n°173, 2003. Croyances. Avatars du religieux en Asie et en Amérique latine, sous la direction de Marion Aubrée. p. 232
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