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Horizontal and vertical movements of humpback whales inform the use of critical pelagic habitats in the western South Pacific
No full textHumpback whales (Megaptera novaeangliae) are known for their nearshore distribution during the breeding season, but their pelagic habitat use patterns remain mostly unexplored. From 2016 to 2018, 18 humpback whales were equipped with depth-recording satellite tags (SPLASH10) to shed light on environmental and social drivers of seamount association around New Caledonia in the western South Pacific. Movement paths were spatially structured around shallow seamounts (80 m, max 616 m) were also recorded (11.5%), including by maternal females. Deep dives often occurred in series and were characterized by U-shapes suggesting high energy expenditure. This study provides new insights into the formerly overlooked use of pelagic habitats by humpback whales during the breeding season. Given increasing anthropogenic threats on deep sea habitats worldwide, this work has implications for the conservation of vulnerable marine ecosystems
Alpine deep-seated gravitational slope deformation and the Messinian Salinity Crisis
No full textThe southern part of the French Alps is studied for years in mapping and understanding of large-scale gravitational deformations. The identification and the knowledge of large-scale slope deformation (deep-seated gravitational slope deformation or DSGSD and deep-seated landslide or DSL) in the previous work of Jomard (2006) and Zerathe (2013) open a new vision of landslide processes with the reinterpretation of their dynamics and the characterization of the time scales involved. We identify DSGSD (10.10(9) m(3)) in the Var Valley associated with geological and geomorphological anomalies linked to the Messinian Salinity Crisis (MSC) and the alpine orogenesis. We use field observations, geological information (geological map, boreholes), and topographic analysis performed in a GIS environment in order to describe these anomalies. This old and partly eroded slide mass is associated with three typical DSGSD features: (1) a double-crested ridge, the Sinne Valley, (2) a large formation (2.7 x 10(8) m(3)) of slope deposit dated from the Messinian (Carros breccia), and (3) the kilometric deviation (1 to 2 km) of the Var River. We relate all these anomalies to the MSC (5.97 to 5.46 Ma) and the incision of deep canyons during this period related to this major eustatic variation (approximate to 1300 m). The incision of the canyon triggered the collapse process of the DSGSD of the Sinne Valley and so destabilized the entire massif. At present, three DSLs resulting from the DSGSD deformation are still present in the area in a dormant state. Indeed, since the infilling of the Var Canyon during the Pliocene, the activity of the DSGSD has stopped
The ecology and evolution of wildlife cancers : applications for management and conservation
No full textEcological and evolutionary concepts have been widely adopted to understand host-pathogen dynamics, and more recently, integrated into wildlife disease management. Cancer is a ubiquitous disease that affects most metazoan species; however, the role of oncogenic phenomena in eco-evolutionary processes and its implications for wildlife management and conservation remains undeveloped. Despite the pervasive nature of cancer across taxa, our ability to detect its occurrence, progression and prevalence in wildlife populations is constrained due to logistic and diagnostic limitations, which suggests that most cancers in the wild are unreported and understudied. Nevertheless, an increasing number of virus-associated and directly transmissible cancers in terrestrial and aquatic environments have been detected. Furthermore, anthropogenic activities and sudden environmental changes are increasingly associated with cancer incidence in wildlife. This highlights the need to upscale surveillance efforts, collection of critical data and developing novel approaches for studying the emergence and evolution of cancers in the wild. Here, we discuss the relevance of malignant cells as important agents of selection and offer a holistic framework to understand the interplay of ecological, epidemiological and evolutionary dynamics of cancer in wildlife. We use a directly transmissible cancer (devil facial tumour disease) as a model system to reveal the potential evolutionary dynamics and broader ecological effects of cancer epidemics in wildlife. We provide further examples of tumour-host interactions and trade-offs that may lead to changes in life histories, and epidemiological and population dynamics. Within this framework, we explore immunological strategies at the individual level as well as transgenerational adaptations at the population level. Then, we highlight the need to integrate multiple disciplines to undertake comparative cancer research at the human-domestic-wildlife interface and their environments. Finally, we suggest strategies for screening cancer incidence in wildlife and discuss how to integrate ecological and evolutionary concepts in the management of current and future cancer epizootics
Current and future socio-ecological vulnerability and adaptation of artisanal fisheries communities in Peru, the case of the Huaura province
No full textMarine artisanal fisheries make vital contributions to food security, livelihoods, jobs, and income in coastal communities globally. However, resources vary as a result of changes in oceanographic conditions such as sea surface temperature or wind stress, which impacts communities and also makes them more sensitive to other stressors such as climate change. In Peru, small-scale fisheries are paramount to the country's economy and food security. They are also one of most globally affected by interannual changes and potentially impacted by climate change. Assessing their present and future vulnerability and finding adaptation strategies are key to the sustainability of the sector and the livelihoods of many. This study assesses the local vulnerability in the Huaura province, Peru, where three fishing communities of very different socio-economic characteristics share the same fishing ground. The region is very sensitive to changes associated with El Nino. We assess the ecological and socio-economic vulnerability using governmental and local information, to pinpoint the main drivers of vulnerability. We find stark differences between communities: Carquln shows the greatest dependence on artisanal fishing for income and a low adaptive capacity, whereas Huacho, a larger and more diversified economy, presents greater livelihood alternatives for the artisanal fishermen. The future vulnerability analysis highlights the need to implement adaptation measures, including: economic diversification; forms to add value to the artisanal fishing; sustainable management of fishing grounds; and actions that help manage shocks from inter annual variations, such as monitoring and prediction systems, but also financing mechanisms that could attenuate the socio-economic impacts
Maternal mid-upper arm circumference during pregnancy and linear growth among Cambodian infants during the first months of life
No full textStunting prevalence among children under 5 years remains high in Cambodia, affecting about one-third of children. In most low- and middle-income countries, linear growth faltering of young children starts in the womb. The 1,000-days window of opportunity to improve child nutritional status includes pregnancy, as maternal nutritional status is an important determinant of birthweight and child development. In Cambodia, nutritional status of pregnant women is poor, with some studies reporting >20% of pregnant women having a low mid-upper arm circumference (MUAC 23 cm. This study underlines the importance of optimum maternal MUAC during pregnancy for optimal infant growth. Interventions that aim to tackle stunting in infants should integrate improving maternal MUAC during pregnancy
A transposon story : from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore
No full textTransposable elements (TEs) are the main components of genomes. However, due to their repetitive nature, they are very difficult to study using data obtained with short-read sequencing technologies. Here, we describe an efficient pipeline to accurately recover TE insertion (TEI) sites and sequences from long reads obtained by Oxford Nanopore Technology (ONT) sequencing. With this pipeline, we could precisely describe the landscapes of the most recent TEIs in wild-type strains ofDrosophila melanogasterandDrosophila simulans. Their comparison suggests that this subset of TE sequences is more similar than previously thought in these two species. The chromosome assemblies obtained using this pipeline also allowed recovering piRNA cluster sequences, which was impossible using short-read sequencing. Finally, we used our pipeline to analyze ONT sequencing data from aD. melanogasterunstable line in which LTR transposition was derepressed for 73 successive generations. We could rely on single reads to identify new insertions with intact target site duplications. Moreover, the detailed analysis of TEIs in the wild-type strains and the unstable line did not support the trap model claiming that piRNA clusters are hotspots of TE insertions
Dietary bioaccumulation of persistent organic pollutants in the common sole Solea solea in the context of global change. Part 1 : Revisiting parameterisation and calibration of a DEB model to consider inter-individual variability in experimental and natural conditions
No full textStudying adverse effects of chemical pressure on aquatic ecosystems needs a comprehensive knowledge of bioaccumulation mechanisms of pollutants in biota to predict internal concentrations, especially for Persistent Organic Pollutants (POPs). However, the large variability of responses in measured POP concentrations requires explicit consideration of both individual variability and environmental influences. Dynamic Energy Budget (DEB) theory provides a rigorous and generic conceptual framework for tackling these questions in a relevant mechanistic way. In the present study, parameterisation and calibration of previous DEB models for Solea solea were revisited in order to accurately represent the full life cycle with an original emphasis on larval stage, metamorphosis, reproduction rules and sexual differences. We first improved calibration thanks to the use of the estimation procedure developed by the DEB network coupled with a broad compilation of data from literature. Then, we validated this set of parameter estimates on independent datasets of i) individual monitoring of larval growth in controlled food conditions from a novel experiment, and ii) juvenile and adult growth, and female fecundity, from a natural population. Finally, we combined the DEB model developed in the present paper with we used a simple toxicokinetic (TK) model from literature. This TK model was also combined to a previous DEB model and was used to reproduce the mean trajectories of a growth and contamination dataset. We applied the same TK model with our DEB model considering inter-individual variability in food availability. This application highlighted the need to accurately consider inter-individual variability in ingestion to correctly estimate growth and contamination variability. The present work is the first step in the development of a mechanistic TK model that will be used in a companion paper for investigations of juvenile sole sensitivity to warming, nursery quality and prey contamination, in highly fluctuating estuarine environments
Ability of spatial indicators to detect geographic changes (shift, shrink and split) across biomass levels and sample sizes
No full textSpatial indicators are widely used to monitor species and are essential to management and conservation. In the present study, we tested the ability of 11 spatial indicators to quantify changes in species' geographic patterns: (1) spatial displacement of a patch of biomass ('shift'), (2) a spatial decrease in a patch, accompanied either by a loss of biomass ('shrink0') or (3) a relocation of the same biomass ('shrink1'), and (4) splitting of a patch into smaller patches ('split'). The geographic changes were simulated by manipulating the spatial distributions of the demersal species (observed during bottom trawl surveys). Hence, the spatial distributions of the latter being used as input data on which the manipulations were done. Additionally, other aspects of the indicators affecting the responses to the geographic changes were also tested, (1) homogeneous increase in biomass throughout the patch and (2) different sample sizes. The center of gravity (defined by latitude and longitude) was the only indicator that accurately detected the 'shift' in biomass. The index of aggregation identified a decrease in the area and biomass of the main biomass patch ('shrink0'), while the Gini index, equality area and spreading area were accurately identified a decrease in the area of the main biomass patch when total biomass did not decreased ('Shrink1'). Inertia and isotropy responded to all geographic changes, except for those in biomass or distribution area. None of the indicators successfully identified 'split' process. Likewise, one of the indicators were sensitive to a homogeneous increase in biomass or the type of spatial distribution. Overall, all indicators behaved similarly well when sample sizes exceeded 40 stations randomly located in the area. The framework developed provides an accessible and simple approach that can be used to evaluate the ability of spatial indicators to identify geographic processes using empirical data and can be extended to other indicators or geographic processes. We discuss perspectives of the development of spatial indicators especially within the application of EU's Marine Strategy Framework Directive
Tracking improvement in simulated marine biogeochemistry between CMIP5 and CMIP6
No full textPurpose of Review The changes or updates in ocean biogeochemistry component have been mapped between CMIP5 and CMIP6 model versions, and an assessment made of how far these have led to improvements in the simulated mean state of marine biogeochemical models within the current generation of Earth system models (ESMs). Recent Findings The representation of marine biogeochemistry has progressed within the current generation of Earth system models. However, it remains difficult to identify which model updates are responsible for a given improvement. In addition, the full potential of marine biogeochemistry in terms of Earth system interactions and climate feedback remains poorly examined in the current generation of Earth system models. Increasing availability of ocean biogeochemical data, as well as an improved understanding of the underlying processes, allows advances in the marine biogeochemical components of the current generation of ESMs. The present study scrutinizes the extent to which marine biogeochemistry components of ESMs have progressed between the 5th and the 6th phases of the Coupled Model Intercomparison Project (CMIP)
Anopheles bionomics, insecticide resistance and malaria transmission in southwest Burkina Faso : a pre-intervention study
No full textBackground Twenty-seven villages were selected in southwest Burkina Faso to implement new vector control strategies in addition to long lasting insecticidal nets (LLINs) through a Randomized Controlled Trial (RCT). We conducted entomological surveys in the villages during the dry cold season (January 2017), dry hot season (March 2017) and rainy season (June 2017) to describe malaria vectors bionomics, insecticide resistance and transmission prior to this trial. Methods We carried out hourly catches (from 17:00 to 09:00) inside and outside 4 houses in each village using the Human Landing Catch technique. Mosquitoes were identified using morphological taxonomic keys. Specimens belonging to the Anopheles gambiae complex and Anopheles funestus groupwere identified using molecular techniques as well as detection of Plasmodium falciparum infection and insecticide resistance target-site mutations. Results Eight Anopheles species were detected in the area. Anopheles funestus s.s was the main vector during the dry cold season. It was replaced by Anopheles coluzzii during the dry hot season whereas An. coluzzii and An. gambiae s.s. were the dominant species during the rainy season. Species composition of the Anopheles population varied significantly among seasons. All insecticide resistance mechanisms (kdr-w, kdr-e and ace-1 target site mutations) investigated were found in each members of the An. gambiae complex but at different frequencies. We observed early and late biting phenotypes in the main malaria vector species. Entomological inoculation rates were 2.61, 2.67 and 11.25 infected bites per human per month during dry cold season, dry hot season and rainy season, respectively. Conclusion The entomological indicators of malaria transmission were high despite the universal coverage with LLINs. We detected early and late biting phenotypes in the main malaria vector species as well as physiological insecticide resistance mechanisms. These data will be used to evaluate the impact of complementary tools to LLINs in an upcoming RCT