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Bopopia, a new monotypic genus of Gesneriaceae (Gesnerioideae, Coronanthereae) from New Caledonia
No full textA new genus of Gesneriaceae, Bopopia Munzinger & J.R.Morel gen. nov., is described from New Caledonia. The genus is based on B. parviflora Munzinger & J.R.Morel gen. et sp. nov., a new species collected during an expedition on Mt Katalupaik, in the North Province of New Caledonia's main island. Originally considered as a species of Coronanthera, our phylogenetic analysis - including 19 species within Coronanthereae and two individuals of B. parviflora gen. et sp. nov., and using three molecular markers (nuclear rDNA ITS, and chloroplast regions trnL-trnF and trnE-trnT) - showed that the new species is not close to Coronanthera in subtribe Coronantherinae, but belongs to subtribe Negriinae where it is sister to Depanthus. From that genus Bopopia gen. nov. differs in floral symmetry (zygomorphic vs actinomorphic) and the number of stamens (4 vs 5). From the other genera of Negriinae the new genus differs in the white corolla and its indeterminate thyrse with 3 to 5 levels of branching. The morphological circumscription of the subtribe Negriinae is amended to include Bopopia gen. nov. Two keys are provided, one to the subtribes in the tribe Coronanthereae, and one to the genera in subtribe Negriinae. Following the IUCN Red List categories and criteria, the conservation status of B. parviflora gen. et sp. nov. is provisionally assessed as Endangered (EN)
Would we recover better sleep at the end of Covid-19 ? A relative improvement observed at the population level with the end of the lockdown in France
No full textBackground: The outbreak of the Covid-19 pandemic and the accompanying lockdown measures have had a major impact on societies around the world, leading to sleep problems for a large part of the population. In order to assess the sustainability of sleeping troubles related to the sanitary crisis, it was crucial to measure its prevalence after the end of the Covid-19 confinement. Methods: As part of an epidemiological survey on Covid and Confinement (COCONEL), we enquired on sleep disorders using two items in 4 repetitive cross-sectional surveys. The first took place during the first week of the French confinement (March 31 to April 2; N = 1005 participants). The second took place in the middle of this period (April 15-17; N = 1005). The two last surveys were held at the end of the confinement (May 7-10; N = 2003) and one month after the end (June 10-12; N = 1736). Using a random constant, the mixed model took into account the longitudinal character of the last two waves (intra-individual correlations for individuals surveyed in waves 3 and 4). Results: The prevalence of sleep problems significantly decreased during the last weeks of the confinement, and this trend was confirmed one month after the end of confinement. One quarter of the population reported that their sleep was better one month after the end of the confinement. Sleep improvement was reported more often by women and people aged less than 65. Such improvement was less frequent among those who were still highly exposed to the pandemic's media coverage after the end of the confinement. Conclusion: The possibility of recovering a good sleep largely depends on the type of sleep disorder. The decrease in sleep problems occurred mainly among people with mild sleep problems during the confinement. Further research is needed to assess the long-term effects of the Covid-19 pandemic and its confinement period on sleep quality in the general population
Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner) : climate influences, breeding potential and diversity conservation
No full textWild genetic resources and their ability to adapt to environmental change are critically important in light of the projected climate change, while constituting the foundation of agricultural sustainability. To address the expected negative effects of climate change on Robusta coffee trees (Coffea canephora), collecting missions were conducted to explore its current native distribution in Uganda over a broad climatic range. Wild material from seven forests could thus be collected. We used 19 microsatellite (SSR) markers to assess genetic diversity and structure of this material as well as material from two ex-situ collections and a feral population. The Ugandan C. canephora diversity was then positioned relative to the species' global diversity structure. Twenty-two climatic variables were used to explore variations in climatic zones across the sampled forests. Overall, Uganda's native C. canephora diversity differs from other known genetic groups of this species. In northwestern (NW) Uganda, four distinct genetic clusters were distinguished being from Zoka, Budongo, Itwara and Kibale forests A large southern-central (SC) cluster included Malabigambo, Mabira, and Kalangala forest accessions, as well as feral and cultivated accessions, suggesting similarity in genetic origin and strong gene flow between wild and cultivated compartments. We also confirmed the introduction of Congolese varieties into the SC region where most Robusta coffee production takes place. Identified populations occurred in divergent environmental conditions and 12 environmental variables significantly explained 16.3% of the total allelic variation across populations. The substantial genetic variation within and between Ugandan populations with different climatic envelopes might contain adaptive diversity to cope with climate change. The accessions that we collected have substantially enriched the diversity hosted in the Ugandan collections and thus contribute to ex situ conservation of this vital genetic resource. However, there is an urgent need to develop strategies to enhance complementary in-situ conservation of Coffea canephora in native forests in northwestern Uganda
Predicting the public health impact of a malaria transmission-blocking vaccine
No full textTransmission-blocking vaccines that interrupt malaria transmission from humans to mosquitoes are being tested in early clinical trials. The activity of such a vaccine is commonly evaluated using membrane-feeding assays. Understanding the field efficacy of such a vaccine requires knowledge of how heavily infected wild, naturally blood-fed mosquitoes are, as this indicates how difficult it will be to block transmission. Here we use data on naturally infected mosquitoes collected in Burkina Faso to translate the laboratory-estimated activity into an estimated activity in the field. A transmission dynamics model is then utilised to predict a transmission-blocking vaccine's public health impact alongside existing interventions. The model suggests that school-aged children are an attractive population to target for vaccination. Benefits of vaccination are distributed across the population, averting the greatest number of cases in younger children. Utilising a transmission-blocking vaccine alongside existing interventions could have a substantial impact against malaria. Malaria transmission-blocking vaccines are in development, but roll-out strategies have not been assessed. Here, the authors show that transmission-blocking activity is likely to be higher in the field than in laboratory conditions, and that school-aged children are an important group to target
Neglected tropical diseases : planning for the next decade of progress
No full textAccurate and reliable diagnostic tools are an essential requirement for neglected tropical diseases (NTDs) programmes. However, the NTD community has historically underinvested in the development and improvement of diagnostic tools, potentially undermining the successes achieved over the last 2 decades. Recognizing this, the WHO, in its newly released draft roadmap for NTD 2021-2030, has identified diagnostics as one of four priority areas requiring concerted action to reach the 2030 targets. As a result, WHO established a Diagnostics Technical Advisory Group (DTAG) to serve as the collaborative mechanism to drive progress in this area. Here, the purpose and role of the DTAG are described in the context of the challenges facing NTD programme
Automatic detection of optical signatures within and around Floating Tonga-Fiji pumice rafts using MODIS, VIIRS, and OLCI satellite sensors
No full textAn underwater volcanic eruption off the Vava'u island group in Tonga on 7 August 2019 resulted in the creation of floating pumice on the ocean's surface extending over an area of 150 km2. The pumice's far-reaching effects from its origin in the Tonga region to Fiji and the methods of automatic detection using satellite imagery are described, making it possible to track the westward drift of the pumice raft over 43 days. Level 2 Moderate Resolution Imaging Spectroradiometer (MODIS), Visible Infrared Imaging Radiometer Suite (VIIRS), Sentinel-3 Ocean and Land Color Instrument (OLCI), and Sentinel-3 Sea and Land Surface Temperature Radiometer (SLSTR) imagery of sea surface temperature, chlorophyll-a concentration, quasi-surface (i.e., Rayleigh-corrected) reflectance,and remote sensing reflectance were used to distinguish consolidated and fragmented rafts as well as discolored and mesotrophic waters. The rafts were detected by a 1 to 3.5°C enhancement in the MODIS-derived "sea surface temperature" due to the emissivity difference of the raft material. Large plumes of discolored waters, characterized by higher satellite reflectance/backscattering of particles in the blue than surrounding waters (and corresponding to either submersed pumice or associated white minerals), were associated with the rafts. The discolored waters had relatively lower chlorophyll-a concentration, but this was artificial, resulting from the higher blue/red reflectance ratio caused by the reflective pumice particles. Mesotrophic waters were scarce in the region of the pumice rafts, presumably due to the absence of phytoplanktonic response to a silicium-rich pumice environment in these tropical oligotrophic environments. As beach accumulations around Pacific islands surrounded by coral shoals are a recurrent phenomenon that finds its origin far east in the ocean along the Tongan trench, monitoring the events from space, as demonstrated for the 7 August 2019 eruption, might help mitigate their potential economic impacts
Widespread mutations in voltage-gated sodium channel gene of Cimex lectularius (Hemiptera : Cimicidae) populations in Paris
No full textBed bugs, Cimex lectularius and C. hemipterus, are common blood-sucking ectoparasites of humans with a large geographical distribution, worldwide. In France, little is known about the status of bed bugs' infestation and their resistance to insecticides, particularly, pyrethroids. Here, we aimed to find mutations in the kdr gene, known to be involved in resistance to insecticides. We gathered bed bugs from various infested locations, including 17 private houses, 12 HLM building complex, 29 apartments, 2 EHPAD, and 2 immigrants' residences. A total of 1211 bed bugs were collected and morphologically identified as C. lectularius. Two fragments of the kdr gene, encompassing codons V419L and L925I, were successfully amplified for 156 specimens. We recorded sense mutation in the first amplified fragment (kdr1) in 89 out of 156 (57%) samples, in which in 61 out of 89 (68.5%) sequences, a change of valine (V) into leucine (L) V419L was observed. Within the second fragment (kdr2), a homozygous mutation was recorded in 73 out of 156 (46.7%) specimens at the codon 925. At this position, 43 out of 73 (58.9%) specimens had a sense mutation leading to the replacement of leucine (L) by isoleucine (I). Among 162 mutant sequences analyzed (89 for the kdr1 fragment and 73 for the kdr2 one), we detected single point mutation in 26.6%, while 73.4% presented the mutation in both kdr1 and kdr2 fragments. All modifications recorded in bed bug populations of Paris are described to be involved in the knockdown resistance (kdr) against pyrethroids
Monitoring discharge in a tidal river using water level observations : application to the Saigon River, Vietnam
No full textThe hydrological dynamics of the Saigon River is ruled by a complex combination of factors, which need to be disentangled to prevent and limit risks of flooding and salt intrusion. In particular, the Saigon water discharge is highly influenced by tidal cycles with a relatively low net discharge. This study proposes a low-cost technique to estimate river discharge at high frequency (every 10 min in this study). It is based on a stage-fall-discharge (SFD) rating curve adapted from the general Manning Strickler law, and calibrated thanks to two ADCP campaigns. Two pressure sensors were placed at different locations of the river in September 2016: one at the centre of Ho Chi Minh City and one in Phu Cuong, 40 km upstream approximately. The instantaneous water discharge data were used to evaluate the net residual discharge and to highlight seasonal and inter-annual trends. Both water level and water discharge show a seasonal behaviour. Rainfall, including during the Usagi typhoon that hit the megalopolis in November 2018, has no clear and direct impact on water level and water discharge due to the delta flat morphology and complex response between main channel and side channel network and ground water in this estuarine system under tidal influence. However, we found some evidences of interactions between precipitation, groundwater, the river network and possibly coastal waters. This paper can be seen as a proof of concept to (1) present a low-cost discharge method that can be applied to other tidal rivers, and (2) demonstrate how the high-frequency discharge data obtained with this method can be used to evaluate discharge dynamics in tidal river systems
Earthworm inoculation improves upland rice crop yield and other agrosystem services in Madagascar
No full textThe effects of earthworm inoculation and cropping systems on upland rice systems were examined over a four-year period in the Highlands of Madagascar. Each year, endogeic earthworms Pontoscolex corethrurus (Rhinodrilidae) were inoculated (EW+) at a density of 75 ind m(-2) or were not inoculated (EW0). Inoculation was tested in three cropping systems: conservation agriculture (CA) and traditional tillage with or without residues restitution. Soil and plant properties were measured during the first three years while soil biological properties were assessed at the fourth year. At the end of the experiment, earthworm density was three-fold higher in EW+ than in EW0, demonstrating the success of the inoculation. Earthworm density was more important in CA than in tillage systems. Earthworm inoculation had higher significant effects on soil and plant properties than cropping systems. Earthworm inoculation had positive effects on soil macroaggregation (+43%), aboveground biomass (+27%), rice grain yield (+45%), and N grain amount (+43%). Intensifying earthworm activity in field conditions to meet the challenge of ecological transition is supported by our study